Wall clock time and date at job start Tue Mar 31 2020 05:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46961 * 2 1 4 4 C 1.52999 * 109.46979 * 119.99882 * 2 1 3 5 5 N 1.46502 * 109.46811 * 173.49789 * 4 2 1 6 6 C 1.46503 * 120.00157 * 95.48503 * 5 4 2 7 7 C 1.50702 * 109.46805 * 84.89927 * 6 5 4 8 8 H 1.07998 * 120.00499 * 359.97438 * 7 6 5 9 9 C 1.37885 * 119.99559 * 180.02562 * 7 6 5 10 10 N 1.31504 * 120.00216 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99547 * 179.71986 * 9 7 6 12 12 H 1.48501 * 109.47262 * 270.27532 * 11 9 7 13 13 H 1.48493 * 109.47071 * 30.28023 * 11 9 7 14 14 H 1.48500 * 109.46576 * 150.27857 * 11 9 7 15 15 C 1.34781 * 120.00067 * 275.48601 * 5 4 2 16 16 O 1.21281 * 119.99779 * 4.96238 * 15 5 4 17 17 C 1.50700 * 120.00258 * 184.97057 * 15 5 4 18 18 H 1.08999 * 109.46665 * 317.09702 * 17 15 5 19 19 C 1.53005 * 109.47313 * 77.09284 * 17 15 5 20 20 C 1.53002 * 109.46727 * 59.99939 * 19 17 15 21 21 C 1.53002 * 109.46934 * 60.00086 * 20 19 17 22 22 C 1.52996 * 109.47268 * 299.99664 * 21 20 19 23 23 C 1.52989 * 109.47183 * 197.09487 * 17 15 5 24 24 H 1.08999 * 109.47175 * 179.97438 * 23 17 15 25 25 C 1.53009 * 109.47002 * 60.00031 * 23 17 15 26 26 H 1.08999 * 109.47206 * 299.99953 * 1 2 3 27 27 H 1.09004 * 109.47364 * 60.00231 * 1 2 3 28 28 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47206 * 240.00047 * 2 1 3 30 30 H 1.08995 * 109.47112 * 300.00083 * 3 2 1 31 31 H 1.08999 * 109.47122 * 59.99995 * 3 2 1 32 32 H 1.09003 * 109.46863 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47178 * 53.49937 * 4 2 1 34 34 H 1.09004 * 109.47453 * 293.49264 * 4 2 1 35 35 H 1.08997 * 109.47093 * 324.90100 * 6 5 4 36 36 H 1.09005 * 109.47229 * 204.89459 * 6 5 4 37 37 H 0.97001 * 120.00061 * 359.71791 * 10 9 7 38 38 H 1.08999 * 109.47077 * 180.02562 * 19 17 15 39 39 H 1.08999 * 109.47087 * 300.00915 * 19 17 15 40 40 H 1.09003 * 109.47184 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.47517 * 299.99945 * 20 19 17 42 42 H 1.09004 * 109.46767 * 59.99925 * 21 20 19 43 43 H 1.08999 * 109.47356 * 179.97438 * 21 20 19 44 44 H 1.09004 * 109.47435 * 179.97438 * 22 21 20 45 45 H 1.08996 * 109.47285 * 300.00471 * 22 21 20 46 46 H 1.08999 * 109.46727 * 60.00080 * 25 23 17 47 47 H 1.09002 * 109.46665 * 179.97438 * 25 23 17 48 48 H 1.08999 * 109.46891 * 299.99850 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4966 -0.8581 1.1736 6 6 4.3600 0.1273 1.8291 7 6 4.5424 -0.2489 3.2769 8 1 4.0629 -1.1333 3.6697 9 6 5.3208 0.5366 4.1005 10 7 5.9036 1.6143 3.6227 11 14 5.5406 0.0746 5.8971 12 1 4.4703 0.7109 6.7063 13 1 5.4599 -1.4010 6.0421 14 1 6.8664 0.5468 6.3709 15 6 4.0424 -1.8907 0.5009 16 8 3.3319 -2.6553 -0.1168 17 6 5.5353 -2.0953 0.5164 18 1 6.0349 -1.1349 0.3898 19 6 5.9515 -2.7143 1.8523 20 6 5.2500 -4.0624 2.0301 21 6 5.6484 -4.9991 0.8878 22 6 5.2323 -4.3801 -0.4480 23 6 5.9336 -3.0320 -0.6258 24 1 7.0135 -3.1796 -0.6148 25 6 5.5175 -2.4128 -1.9617 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.5847 -1.7097 1.3094 34 1 1.7748 -0.1446 2.1355 35 1 3.8998 1.1133 1.7651 36 1 5.3308 0.1465 1.3336 37 1 5.7892 1.8544 2.6898 38 1 7.0314 -2.8619 1.8637 39 1 5.6676 -2.0471 2.6661 40 1 5.5468 -4.5037 2.9816 41 1 4.1702 -3.9145 2.0189 42 1 6.7283 -5.1471 0.8991 43 1 5.1491 -5.9597 1.0147 44 1 5.5164 -5.0472 -1.2619 45 1 4.1525 -4.2321 -0.4592 46 1 6.0172 -1.4524 -2.0883 47 1 5.8017 -3.0800 -2.7755 48 1 4.4377 -2.2649 -1.9729 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714396637.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:10 Heat of formation + Delta-G solvation = -75.609653 kcal Electronic energy + Delta-G solvation = -24789.865331 eV Core-core repulsion = 21650.178446 eV Total energy + Delta-G solvation = -3139.686885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25013 -37.41309 -35.63184 -34.32628 -32.44004 -32.09997 -30.42098 -27.33792 -26.78697 -26.33838 -25.32962 -23.02430 -22.39503 -20.88461 -20.37298 -19.71043 -18.04813 -16.76856 -16.16746 -15.53499 -15.03404 -14.53247 -14.37405 -13.90051 -13.77078 -13.65454 -13.32274 -12.90955 -12.72547 -12.64711 -12.51667 -12.09626 -12.00149 -11.90283 -11.52750 -11.52256 -11.31227 -11.06186 -11.00014 -10.86662 -10.72546 -10.64210 -10.59478 -10.33149 -10.28102 -10.23078 -10.13275 -9.59647 -9.44645 -9.20140 -8.56000 -8.40500 -7.61430 -6.52161 -4.26407 3.34764 3.37182 3.43574 3.53114 3.92734 4.40306 5.09653 5.12911 5.18257 5.24844 5.25594 5.28572 5.41982 5.53494 5.60597 5.67971 5.84567 5.84811 5.94120 5.98075 5.99482 6.00931 6.05120 6.11561 6.14738 6.21502 6.24531 6.26891 6.31052 6.34746 6.38572 6.49460 6.57421 6.58337 6.65040 6.69870 6.73498 6.78222 6.79911 6.90694 7.07431 7.20210 7.49666 7.86600 8.17003 8.44779 8.65257 9.05953 9.42346 10.83138 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.011362 B = 0.008686 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.757711 B = 3222.665759 C = 4812.811836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.129 3.871 5 N -0.589 5.589 6 C 0.223 3.777 7 C -0.610 4.610 8 H 0.057 0.943 9 C 0.025 3.975 10 N -0.904 5.904 11 Si 1.065 2.935 12 H -0.287 1.287 13 H -0.286 1.286 14 H -0.283 1.283 15 C 0.528 3.472 16 O -0.564 6.564 17 C -0.094 4.094 18 H 0.086 0.914 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.135 4.135 23 C -0.069 4.069 24 H 0.063 0.937 25 C -0.151 4.151 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.269 0.731 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.043 0.957 45 H 0.111 0.889 46 H 0.044 0.956 47 H 0.047 0.953 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -5.655 -6.317 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 C -0.201 4.201 4 C 0.005 3.995 5 N -0.318 5.318 6 C 0.103 3.897 7 C -0.648 4.648 8 H 0.076 0.924 9 C -0.180 4.180 10 N -0.539 5.539 11 Si 0.893 3.107 12 H -0.214 1.214 13 H -0.212 1.212 14 H -0.209 1.209 15 C 0.317 3.683 16 O -0.446 6.446 17 C -0.115 4.115 18 H 0.104 0.896 19 C -0.164 4.164 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.172 4.172 23 C -0.088 4.088 24 H 0.081 0.919 25 C -0.208 4.208 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.128 0.872 46 H 0.064 0.936 47 H 0.066 0.934 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.700 -5.544 -5.201 8.067 hybrid contribution -0.568 -0.309 -1.314 1.464 sum -3.268 -5.853 -6.515 9.348 Atomic orbital electron populations 1.21743 0.95381 1.01423 1.01316 1.21479 0.95225 0.96630 0.99672 1.21870 1.01759 0.95692 1.00827 1.21302 0.81066 1.00120 0.96977 1.48042 1.06217 1.26348 1.51187 1.19609 0.89368 0.87509 0.93215 1.22273 1.34493 1.13222 0.94815 0.92430 1.25746 0.93106 0.93573 1.05624 1.70791 1.41720 1.24178 1.17209 0.83576 0.76889 0.75597 0.74589 1.21385 1.21232 1.20877 1.20414 0.90394 0.79788 0.77695 1.90392 1.63696 1.45626 1.44841 1.21236 0.93230 0.99974 0.97024 0.89617 1.21814 0.99434 0.97336 0.97785 1.21491 1.00749 0.95738 0.97360 1.21499 0.99901 0.97931 0.95828 1.22056 1.05080 0.94548 0.95544 1.20910 0.98918 0.95300 0.93697 0.91878 1.21915 1.02869 0.99560 0.96449 0.92801 0.93054 0.92832 0.91139 0.93642 0.92790 0.92195 0.91607 0.90569 0.95431 0.95402 0.92079 0.92393 0.86761 0.92726 0.92196 0.93120 0.93088 0.93815 0.87164 0.93650 0.93426 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 2 C -0.11 -1.76 3.08 -90.62 -0.28 -2.04 16 3 C -0.14 -2.26 8.41 37.16 0.31 -1.95 16 4 C 0.13 2.36 4.75 -4.04 -0.02 2.34 16 5 N -0.59 -11.91 2.23 -175.05 -0.39 -12.30 16 6 C 0.22 5.02 3.42 -5.19 -0.02 5.00 16 7 C -0.61 -15.09 6.80 -34.44 -0.23 -15.33 16 8 H 0.06 1.48 7.61 -52.49 -0.40 1.08 16 9 C 0.03 0.65 5.46 -17.82 -0.10 0.55 16 10 N -0.90 -24.84 13.65 55.43 0.76 -24.09 16 11 Si 1.07 23.49 29.90 -169.99 -5.08 18.41 16 12 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.53 10.47 4.92 -10.98 -0.05 10.42 16 16 O -0.56 -11.62 11.18 5.56 0.06 -11.56 16 17 C -0.09 -1.73 1.80 -91.77 -0.16 -1.89 16 18 H 0.09 1.65 6.31 -51.93 -0.33 1.32 16 19 C -0.13 -2.36 5.37 -26.73 -0.14 -2.50 16 20 C -0.12 -2.01 5.70 -26.73 -0.15 -2.16 16 21 C -0.11 -1.75 5.92 -26.73 -0.16 -1.91 16 22 C -0.14 -2.18 4.92 -26.73 -0.13 -2.31 16 23 C -0.07 -1.13 2.46 -90.62 -0.22 -1.35 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.15 -2.33 8.90 37.16 0.33 -2.00 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.04 6.21 -51.93 -0.32 0.72 16 33 H 0.07 1.23 7.67 -51.93 -0.40 0.83 16 34 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 35 H 0.03 0.65 6.25 -51.93 -0.32 0.32 16 36 H 0.03 0.65 5.73 -51.93 -0.30 0.36 16 37 H 0.27 7.30 7.22 -40.82 -0.29 7.00 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.11 2.48 4.75 -51.93 -0.25 2.23 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.16 7.10 -51.93 -0.37 0.79 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.11 2.04 4.98 -51.94 -0.26 1.79 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.07 1.19 6.16 -51.93 -0.32 0.87 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -26.18 351.27 -8.73 -34.91 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.68 Total: 5.98 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.69 Total: -16.66 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.37 Total: -36.39 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.06 Total: -11.56 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.41 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.18 -8.73 -34.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714396637.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.695 kcal (2) G-P(sol) polarization free energy of solvation -26.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds