Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47219 * 2 1 4 4 C 1.52999 * 109.47137 * 119.99930 * 2 1 3 5 5 N 1.46496 * 109.47238 * 182.55480 * 4 2 1 6 6 C 1.46501 * 119.99757 * 303.06633 * 5 4 2 7 7 C 1.50703 * 109.47310 * 274.95109 * 6 5 4 8 8 H 1.08001 * 119.99901 * 355.01017 * 7 6 5 9 9 C 1.37879 * 120.00201 * 175.00937 * 7 6 5 10 10 N 1.31510 * 119.99616 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00009 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46664 * 270.00004 * 11 9 7 13 13 H 1.48496 * 109.46937 * 29.99512 * 11 9 7 14 14 H 1.48496 * 109.46961 * 150.00057 * 11 9 7 15 15 C 1.34773 * 120.00320 * 123.06764 * 5 4 2 16 16 O 1.21279 * 120.00234 * 186.12389 * 15 5 4 17 17 C 1.50702 * 119.99704 * 6.11565 * 15 5 4 18 18 H 1.08996 * 109.47132 * 53.64303 * 17 15 5 19 19 C 1.52996 * 109.47350 * 293.63895 * 17 15 5 20 20 C 1.53004 * 109.47190 * 179.97438 * 19 17 15 21 21 C 1.53001 * 109.46755 * 60.00506 * 20 19 17 22 22 C 1.53002 * 109.47150 * 299.99709 * 21 20 19 23 23 C 1.53001 * 109.46859 * 173.64241 * 17 15 5 24 24 H 1.08996 * 109.47197 * 60.00102 * 23 17 15 25 25 C 1.53002 * 109.47150 * 299.99968 * 23 17 15 26 26 H 1.09005 * 109.47460 * 299.99783 * 1 2 3 27 27 H 1.09003 * 109.47581 * 60.00092 * 1 2 3 28 28 H 1.08996 * 109.47283 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47138 * 239.99827 * 2 1 3 30 30 H 1.08995 * 109.46941 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46935 * 299.93514 * 3 2 1 32 32 H 1.08998 * 109.47022 * 59.92800 * 3 2 1 33 33 H 1.09008 * 109.47300 * 62.55650 * 4 2 1 34 34 H 1.09001 * 109.47314 * 302.56020 * 4 2 1 35 35 H 1.09002 * 109.47071 * 154.95432 * 6 5 4 36 36 H 1.09000 * 109.47524 * 34.95553 * 6 5 4 37 37 H 0.97001 * 119.99855 * 180.02562 * 10 9 7 38 38 H 1.08996 * 109.47336 * 300.00283 * 19 17 15 39 39 H 1.08999 * 109.47070 * 60.00323 * 19 17 15 40 40 H 1.09001 * 109.47090 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.47396 * 300.00471 * 20 19 17 42 42 H 1.08996 * 109.47197 * 59.99843 * 21 20 19 43 43 H 1.08997 * 109.46922 * 179.97438 * 21 20 19 44 44 H 1.08999 * 109.47362 * 180.02562 * 22 21 20 45 45 H 1.08998 * 109.46798 * 300.00513 * 22 21 20 46 46 H 1.08997 * 109.47112 * 60.00233 * 25 23 17 47 47 H 1.09002 * 109.46963 * 180.02562 * 25 23 17 48 48 H 1.09006 * 109.47261 * 300.00086 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5036 -0.6682 1.2804 6 6 4.2799 -1.1986 0.1570 7 6 4.4750 -2.6821 0.3371 8 1 4.1327 -3.1661 1.2399 9 6 5.0904 -3.4215 -0.6506 10 7 5.5067 -2.8323 -1.7502 11 14 5.3315 -5.2604 -0.4276 12 1 6.6391 -5.5119 0.2299 13 1 4.2391 -5.8037 0.4189 14 1 5.3081 -5.9271 -1.7543 15 6 4.1360 -0.1314 2.3426 16 8 5.3399 0.0143 2.3217 17 6 3.3472 0.2881 3.5563 18 1 2.7398 -0.5484 3.9017 19 6 2.4374 1.4630 3.1922 20 6 1.6361 1.8884 4.4243 21 6 2.5975 2.3134 5.5361 22 6 3.5074 1.1384 5.9002 23 6 4.3090 0.7132 4.6677 24 1 4.9164 1.5497 4.3222 25 6 5.2189 -0.4617 5.0318 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4424 0.0005 31 1 1.6776 1.9560 -0.8906 32 1 1.6756 1.9567 0.8893 33 1 1.7145 -1.7613 1.2267 34 1 1.6396 -0.2346 2.1387 35 1 5.2517 -0.7061 0.1220 36 1 3.7448 -1.0130 -0.7743 37 1 5.9393 -3.3525 -2.4452 38 1 3.0448 2.2995 2.8468 39 1 1.7522 1.1602 2.4005 40 1 0.9882 2.7258 4.1650 41 1 1.0286 1.0518 4.7693 42 1 3.2049 3.1500 5.1910 43 1 2.0267 2.6168 6.4136 44 1 4.1920 1.4410 6.6926 45 1 2.8999 0.3018 6.2452 46 1 5.7894 -0.7650 4.1540 47 1 5.9038 -0.1589 5.8239 48 1 4.6115 -1.2983 5.3773 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714396639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -65.387511 kcal Electronic energy + Delta-G solvation = -24359.474318 eV Core-core repulsion = 21220.230698 eV Total energy + Delta-G solvation = -3139.243619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17916 -37.51168 -36.41579 -33.49556 -32.45200 -32.16115 -31.00022 -27.56677 -26.89536 -26.32056 -25.43277 -23.53285 -22.48796 -21.12593 -19.95358 -19.60782 -18.25635 -16.45960 -16.40316 -15.51668 -14.95005 -14.79252 -14.47600 -14.21142 -14.05420 -13.84026 -13.64732 -13.42282 -12.71643 -12.57205 -12.36262 -12.11622 -11.93438 -11.86159 -11.69617 -11.55131 -11.28641 -11.11161 -11.08665 -10.89255 -10.79947 -10.75001 -10.65754 -10.48278 -10.35905 -10.26823 -10.14133 -10.11523 -9.61519 -9.55562 -8.58617 -8.40824 -7.51935 -6.02293 -4.06757 3.31248 3.37159 3.38984 3.50915 4.00943 4.45913 4.73528 4.77529 4.84861 5.13389 5.19926 5.24625 5.27353 5.31730 5.35235 5.48036 5.51269 5.53597 5.59948 5.68866 5.73093 5.82467 5.89069 5.93009 5.94484 6.02708 6.05038 6.10643 6.13481 6.15543 6.19596 6.25908 6.32644 6.35990 6.41106 6.45613 6.64369 6.68015 6.73175 6.87096 7.21279 7.51724 7.62347 7.95113 8.28040 8.54239 8.93574 9.18831 9.58392 11.05375 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015944 B = 0.006142 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.686397 B = 4557.997602 C = 5709.149235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.103 3.897 5 N -0.593 5.593 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.280 1.280 13 H -0.275 1.275 14 H -0.286 1.286 15 C 0.512 3.488 16 O -0.544 6.544 17 C -0.103 4.103 18 H 0.086 0.914 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.067 4.067 24 H 0.074 0.926 25 C -0.156 4.156 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.084 0.916 47 H 0.046 0.954 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.948 9.247 10.626 17.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.206 4.206 4 C -0.021 4.021 5 N -0.323 5.323 6 C 0.124 3.876 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.206 1.206 13 H -0.200 1.200 14 H -0.212 1.212 15 C 0.299 3.701 16 O -0.423 6.423 17 C -0.124 4.124 18 H 0.104 0.896 19 C -0.168 4.168 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.086 4.086 24 H 0.093 0.907 25 C -0.213 4.213 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.065 0.935 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.212 9.269 10.408 17.279 hybrid contribution 0.111 -1.218 -0.034 1.224 sum -10.102 8.051 10.374 16.568 Atomic orbital electron populations 1.21762 0.95282 1.01640 1.01278 1.21444 0.95020 0.96735 1.00150 1.21934 1.02088 0.95718 1.00817 1.21814 0.81722 1.00561 0.97994 1.48122 1.05811 1.58103 1.20272 1.19255 0.91818 0.93467 0.83062 1.21453 1.38595 0.93160 1.03207 0.92601 1.24920 0.95447 0.98623 0.95062 1.69933 1.40067 1.35985 1.07380 0.86542 0.78644 0.85176 0.77323 1.20600 1.19974 1.21176 1.20291 0.88010 0.77828 0.83980 1.90595 1.14783 1.55617 1.81274 1.21380 0.97390 0.98875 0.94777 0.89578 1.22115 0.98510 0.97701 0.98462 1.21535 0.97649 1.00824 0.95416 1.21550 0.97773 0.98290 0.98136 1.21635 0.98108 0.97900 0.97505 1.20856 0.95448 0.99030 0.93247 0.90745 1.21999 0.99484 0.97171 1.02683 0.93087 0.92786 0.92611 0.89858 0.92065 0.93325 0.92773 0.91789 0.89862 0.94007 0.94636 0.92790 0.91539 0.89250 0.92043 0.91983 0.92068 0.92392 0.92100 0.92166 0.89740 0.93516 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.16 0.34 -1.31 16 2 C -0.11 -1.72 2.65 -90.62 -0.24 -1.96 16 3 C -0.15 -2.13 8.57 37.16 0.32 -1.81 16 4 C 0.10 1.69 4.78 -4.04 -0.02 1.67 16 5 N -0.59 -12.36 1.75 -175.06 -0.31 -12.66 16 6 C 0.24 6.32 5.10 -5.19 -0.03 6.29 16 7 C -0.53 -14.84 9.38 -34.44 -0.32 -15.16 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 11 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.51 10.48 6.62 -10.99 -0.07 10.41 16 16 O -0.54 -13.31 13.41 5.56 0.07 -13.23 16 17 C -0.10 -1.57 1.23 -91.77 -0.11 -1.68 16 18 H 0.09 1.26 7.80 -51.93 -0.41 0.86 16 19 C -0.13 -1.63 4.02 -26.73 -0.11 -1.74 16 20 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 21 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 22 C -0.11 -1.28 5.21 -26.70 -0.14 -1.42 16 23 C -0.07 -0.97 1.87 -90.59 -0.17 -1.14 16 24 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 25 C -0.16 -2.47 8.87 37.16 0.33 -2.14 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.49 6.74 -51.93 -0.35 1.14 16 30 H 0.06 1.06 7.49 -51.93 -0.39 0.67 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.67 5.68 -51.93 -0.29 0.38 16 33 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.08 1.14 3.77 -51.93 -0.20 0.95 16 35 H 0.04 1.24 7.21 -51.93 -0.37 0.86 16 36 H 0.04 0.94 6.36 -51.93 -0.33 0.61 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.09 2.70 -51.93 -0.14 0.95 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.67 5.75 -51.93 -0.30 1.37 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -31.10 355.75 -8.45 -39.55 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.66 Total: 0.95 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.64 Total: -11.01 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.43 Total: -38.48 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.10 -8.45 -39.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714396639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.838 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds