Wall clock time and date at job start Tue Mar 31 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 C 1.52998 * 109.47168 * 120.00339 * 2 1 3 5 5 C 1.53001 * 109.46947 * 175.00079 * 4 2 1 6 6 N 1.46507 * 109.46744 * 179.97438 * 5 4 2 7 7 C 1.46493 * 120.00035 * 270.00113 * 6 5 4 8 8 C 1.50701 * 109.46984 * 270.00150 * 7 6 5 9 9 H 1.08004 * 120.00491 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00026 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00141 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99949 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47268 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47205 * 119.99556 * 12 10 8 15 15 H 1.48497 * 109.47129 * 239.99979 * 12 10 8 16 16 C 1.34775 * 119.99641 * 90.00127 * 6 5 4 17 17 O 1.21282 * 119.99969 * 179.97438 * 16 6 5 18 18 C 1.50701 * 120.00516 * 359.97438 * 16 6 5 19 19 C 1.52996 * 109.47438 * 180.02562 * 18 16 6 20 20 H 1.08998 * 109.46791 * 304.99578 * 19 18 16 21 21 C 1.52995 * 109.47341 * 64.99842 * 19 18 16 22 22 C 1.52996 * 109.47138 * 185.00053 * 19 18 16 23 23 C 1.53000 * 117.49997 * 179.97438 * 22 19 18 24 24 C 1.53002 * 60.02940 * 252.49592 * 23 22 19 25 25 H 1.08996 * 109.47347 * 299.99284 * 1 2 3 26 26 H 1.08995 * 109.47258 * 60.00060 * 1 2 3 27 27 H 1.09000 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46980 * 240.00373 * 2 1 3 29 29 H 1.08997 * 109.46887 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47088 * 300.00627 * 3 2 1 31 31 H 1.09008 * 109.46838 * 60.00031 * 3 2 1 32 32 H 1.09003 * 109.47391 * 54.99828 * 4 2 1 33 33 H 1.09000 * 109.46906 * 295.00320 * 4 2 1 34 34 H 1.09001 * 109.47010 * 60.00403 * 5 4 2 35 35 H 1.08997 * 109.46849 * 299.99572 * 5 4 2 36 36 H 1.08997 * 109.47626 * 29.99876 * 7 6 5 37 37 H 1.08994 * 109.47363 * 150.00600 * 7 6 5 38 38 H 0.96996 * 120.00396 * 180.02562 * 11 10 8 39 39 H 1.08998 * 109.47186 * 59.99338 * 18 16 6 40 40 H 1.09003 * 109.46554 * 300.00360 * 18 16 6 41 41 H 1.08995 * 109.47239 * 180.02562 * 21 19 18 42 42 H 1.09006 * 109.46923 * 300.00299 * 21 19 18 43 43 H 1.08998 * 109.47393 * 60.00105 * 21 19 18 44 44 H 1.09008 * 115.56055 * 325.68508 * 22 19 18 45 45 H 1.09002 * 117.49833 * 359.97438 * 23 22 19 46 46 H 1.09002 * 117.49953 * 144.99738 * 23 22 19 47 47 H 1.09000 * 117.49996 * 107.50493 * 24 23 22 48 48 H 1.08999 * 117.49664 * 252.51862 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 7 4.0532 -1.5212 2.3843 7 6 4.4016 -0.7531 3.5821 8 6 5.8555 -0.3612 3.5222 9 1 6.4598 -0.6552 2.6767 10 6 6.4147 0.3720 4.5474 11 7 5.6792 0.7296 5.5772 12 14 8.2167 0.8584 4.4728 13 1 8.8186 0.3376 3.2191 14 1 8.3314 2.3387 4.4998 15 1 8.9330 0.2850 5.6405 16 6 4.1820 -2.8628 2.3830 17 8 4.5867 -3.4342 3.3733 18 6 3.8230 -3.6531 1.1510 19 6 4.0584 -5.1419 1.4135 20 1 5.0859 -5.2945 1.7437 21 6 3.0963 -5.6266 2.4998 22 6 3.8138 -5.9316 0.1262 23 6 3.9996 -7.4493 0.1823 24 6 5.0261 -6.5800 -0.5469 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6054 -1.7199 1.2951 33 1 1.7516 -0.1584 2.1369 34 1 3.9994 0.1675 1.1421 35 1 3.8531 -1.3940 0.3001 36 1 3.7851 0.1445 3.6303 37 1 4.2259 -1.3626 4.4685 38 1 6.0724 1.2457 6.2982 39 1 4.4448 -3.3280 0.3169 40 1 2.7734 -3.4890 0.9072 41 1 3.2643 -6.6871 2.6871 42 1 3.2706 -5.0639 3.4170 43 1 2.0688 -5.4740 2.1697 44 1 3.0266 -5.5443 -0.5208 45 1 4.2966 -7.8850 1.1363 46 1 3.3342 -8.0607 -0.4273 47 1 5.9980 -6.4440 -0.0726 48 1 5.0358 -6.6193 -1.6361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728871177.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:53 Heat of formation + Delta-G solvation = -47.735904 kcal Electronic energy + Delta-G solvation = -23101.322409 eV Core-core repulsion = 19962.844221 eV Total energy + Delta-G solvation = -3138.478188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.42965 -37.75836 -36.70536 -34.48610 -32.94986 -32.46406 -29.08175 -28.14278 -27.07175 -26.33875 -23.79250 -23.22425 -22.27119 -22.13594 -19.85766 -19.64095 -18.19030 -16.47617 -16.29909 -15.77421 -15.36489 -14.92419 -14.72816 -14.29432 -14.11597 -13.87507 -13.58013 -13.13149 -12.77918 -12.64390 -12.49398 -12.28792 -12.12320 -11.76824 -11.66657 -11.53866 -11.27155 -11.20597 -11.09255 -10.84630 -10.82148 -10.81081 -10.55810 -10.54501 -10.45944 -10.29548 -10.18462 -10.08264 -9.81828 -9.54168 -8.71245 -8.40999 -7.56534 -6.01488 -4.05743 3.30893 3.38407 3.42021 3.53526 3.79699 3.99684 4.46790 4.68411 4.91756 4.93827 4.96243 4.99332 5.04774 5.16037 5.31694 5.37125 5.46913 5.49757 5.60509 5.61492 5.66288 5.71674 5.79126 5.79335 5.82809 5.88111 5.91786 5.95351 6.04044 6.07523 6.10960 6.13497 6.19561 6.21383 6.29982 6.36312 6.52910 6.58969 6.62125 6.74201 7.13352 7.49901 7.62435 7.95796 8.27938 8.51566 8.95008 9.19487 9.59516 11.06514 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009964 B = 0.005829 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2809.482645 B = 4802.553325 C = 6831.127933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.133 4.133 5 C 0.111 3.889 6 N -0.598 5.598 7 C 0.247 3.753 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.505 3.495 17 O -0.540 6.540 18 C -0.133 4.133 19 C -0.044 4.044 20 H 0.077 0.923 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.180 4.180 24 C -0.183 4.183 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.030 0.970 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.044 0.956 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 -7.070 -14.253 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.172 4.172 5 C -0.013 4.013 6 N -0.329 5.329 7 C 0.127 3.873 8 C -0.562 4.562 9 H 0.075 0.925 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.292 3.708 17 O -0.419 6.419 18 C -0.173 4.173 19 C -0.063 4.063 20 H 0.095 0.905 21 C -0.205 4.205 22 C -0.163 4.163 23 C -0.217 4.217 24 C -0.220 4.220 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.582 -7.249 -13.529 17.585 hybrid contribution 0.970 0.446 -0.098 1.072 sum -7.612 -6.803 -13.627 17.027 Atomic orbital electron populations 1.21830 0.95557 1.01415 1.01505 1.21057 0.95399 0.96561 0.98210 1.21909 1.01707 0.95766 1.01425 1.22114 0.96533 1.00432 0.98094 1.21515 0.93027 0.98854 0.87899 1.48243 1.63325 1.05938 1.15443 1.19231 0.95372 0.90534 0.82139 1.21481 0.95489 1.33493 1.05698 0.92522 1.24926 0.98056 0.95967 0.95148 1.69939 1.35959 1.38451 1.09090 0.86479 0.85111 0.77951 0.78096 1.19841 1.21003 1.20912 1.20360 0.78540 0.82637 0.89268 1.90622 1.46240 1.69342 1.35650 1.21748 1.02675 0.95252 0.97658 1.20445 1.01025 0.92125 0.92710 0.90455 1.21902 0.97840 1.00790 0.99966 1.22397 1.00194 0.94376 0.99303 1.22904 1.03009 0.93438 1.02356 1.23031 0.94726 1.05045 0.99226 0.92697 0.93044 0.92952 0.91409 0.92004 0.93231 0.92525 0.92243 0.91309 0.89952 0.91802 0.95213 0.94009 0.92850 0.89708 0.89798 0.93372 0.90217 0.93690 0.88076 0.88803 0.89225 0.88775 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.19 37.16 0.34 -1.09 16 2 C -0.09 -1.03 2.92 -90.62 -0.26 -1.29 16 3 C -0.15 -1.70 8.95 37.16 0.33 -1.37 16 4 C -0.13 -1.81 5.01 -26.73 -0.13 -1.95 16 5 C 0.11 1.79 4.97 -4.04 -0.02 1.77 16 6 N -0.60 -12.56 2.46 -175.06 -0.43 -12.99 16 7 C 0.25 6.45 5.16 -5.20 -0.03 6.43 16 8 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 9 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 12 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 13 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 16 C 0.50 10.38 7.39 -10.99 -0.08 10.30 16 17 O -0.54 -13.35 13.55 5.56 0.08 -13.27 16 18 C -0.13 -1.99 3.71 -27.88 -0.10 -2.09 16 19 C -0.04 -0.63 2.19 -90.63 -0.20 -0.83 16 20 H 0.08 1.27 7.71 -51.93 -0.40 0.87 16 21 C -0.15 -2.16 8.77 37.15 0.33 -1.83 16 22 C -0.14 -1.64 5.15 -90.59 -0.47 -2.11 16 23 C -0.18 -1.85 9.73 -26.73 -0.26 -2.11 16 24 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.78 7.22 -51.93 -0.37 0.41 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.40 6.49 -51.93 -0.34 1.07 16 35 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 36 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 37 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.08 1.16 7.40 -51.93 -0.38 0.78 16 40 H 0.08 1.09 7.18 -51.93 -0.37 0.72 16 41 H 0.05 0.63 7.29 -51.93 -0.38 0.25 16 42 H 0.08 1.43 5.95 -51.93 -0.31 1.12 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.04 8.11 -51.92 -0.42 0.62 16 45 H 0.09 1.00 7.61 -51.93 -0.40 0.60 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 377.38 15.07 5.69 5.69 Total: -1.00 -31.64 377.38 -9.24 -40.88 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -9.04 Total: 0.65 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.25 Total: -11.95 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.31 Total: -39.01 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.64 -9.24 -40.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728871177.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.857 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds