Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46962 * 2 1 4 4 C 1.53002 * 109.47323 * 239.99442 * 2 1 3 5 5 C 1.50695 * 109.47146 * 64.99967 * 4 2 1 6 6 O 1.21278 * 120.00058 * 355.36602 * 5 4 2 7 7 N 1.34776 * 120.00048 * 175.36108 * 5 4 2 8 8 C 1.46495 * 120.00027 * 185.45814 * 7 5 4 9 9 C 1.50701 * 109.47260 * 90.00089 * 8 7 5 10 10 H 1.07995 * 119.99848 * 359.97438 * 9 8 7 11 11 C 1.37886 * 120.00059 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99728 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99953 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47217 * 90.00113 * 13 11 9 15 15 H 1.48495 * 109.47262 * 210.00332 * 13 11 9 16 16 H 1.48503 * 109.47158 * 330.00141 * 13 11 9 17 17 C 1.46500 * 119.99986 * 5.45361 * 7 5 4 18 18 C 1.52996 * 109.46618 * 95.85672 * 17 7 5 19 19 C 1.53000 * 109.47481 * 54.24072 * 18 17 7 20 20 C 1.53004 * 109.47243 * 174.24044 * 18 17 7 21 21 C 1.53001 * 109.47479 * 294.23736 * 18 17 7 22 22 C 1.53000 * 109.46645 * 119.99339 * 2 1 3 23 23 C 1.53001 * 117.50236 * 299.99826 * 22 2 1 24 24 C 1.53000 * 60.03166 * 252.50322 * 23 22 2 25 25 H 1.08999 * 109.46916 * 60.00732 * 1 2 3 26 26 H 1.09002 * 109.46962 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47654 * 300.00323 * 1 2 3 28 28 H 1.08999 * 109.46715 * 185.00390 * 4 2 1 29 29 H 1.09004 * 109.46991 * 304.99975 * 4 2 1 30 30 H 1.08996 * 109.47207 * 209.99933 * 8 7 5 31 31 H 1.08996 * 109.47488 * 330.00030 * 8 7 5 32 32 H 0.96998 * 119.99462 * 179.97438 * 12 11 9 33 33 H 1.08996 * 109.47227 * 215.85741 * 17 7 5 34 34 H 1.09003 * 109.47169 * 335.85810 * 17 7 5 35 35 H 1.08995 * 109.46949 * 59.99695 * 19 18 17 36 36 H 1.09000 * 109.47328 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.46924 * 299.99849 * 19 18 17 38 38 H 1.09000 * 109.46903 * 59.99999 * 20 18 17 39 39 H 1.09000 * 109.47394 * 179.97438 * 20 18 17 40 40 H 1.09004 * 109.46813 * 300.00075 * 20 18 17 41 41 H 1.08998 * 109.47033 * 64.09655 * 21 18 17 42 42 H 1.09004 * 109.47371 * 184.10017 * 21 18 17 43 43 H 1.08996 * 109.47261 * 304.10230 * 21 18 17 44 44 H 1.09004 * 115.56248 * 85.69840 * 22 2 1 45 45 H 1.08996 * 117.49645 * 0.02562 * 23 22 2 46 46 H 1.09002 * 117.49965 * 144.99919 * 23 22 2 47 47 H 1.08996 * 117.50103 * 107.50422 * 24 23 22 48 48 H 1.09002 * 117.49394 * 252.51782 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0568 -2.4766 6 8 0.9404 1.0406 -2.3697 7 7 2.0639 -0.3406 -3.6931 8 6 1.7776 0.4803 -4.8722 9 6 2.8986 1.4652 -5.0829 10 1 3.7399 1.4786 -4.4059 11 6 2.8496 2.3500 -6.1393 12 7 3.8281 3.2091 -6.3234 13 14 1.3940 2.3272 -7.3098 14 1 0.3432 3.2504 -6.8110 15 1 1.8365 2.7634 -8.6585 16 1 0.8451 0.9497 -7.3904 17 6 2.8097 -1.5934 -3.8364 18 6 1.8480 -2.7174 -4.2269 19 6 1.0668 -2.3089 -5.4774 20 6 2.6436 -3.9919 -4.5164 21 6 0.8718 -2.9759 -3.0775 22 6 2.0399 -0.7211 1.2494 23 6 1.6356 -0.1493 2.6097 24 6 3.0743 0.0056 2.1125 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1263 -0.7996 -1.2054 29 1 1.6054 -1.7200 -1.2950 30 1 1.6883 -0.1614 -5.7487 31 1 0.8431 1.0204 -4.7207 32 1 3.7937 3.8312 -7.0668 33 1 3.5679 -1.4785 -4.6109 34 1 3.2914 -1.8398 -2.8901 35 1 1.7622 -2.1248 -6.2962 36 1 0.3820 -3.1099 -5.7558 37 1 0.4999 -1.4010 -5.2711 38 1 3.2001 -4.2830 -3.6255 39 1 1.9584 -4.7928 -4.7942 40 1 3.3391 -3.8078 -5.3353 41 1 0.2546 -2.0915 -2.9193 42 1 0.2341 -3.8243 -3.3261 43 1 1.4311 -3.1959 -2.1682 44 1 2.1271 -1.8044 1.1645 45 1 1.0060 0.7405 2.6145 46 1 1.4563 -0.8563 3.4197 47 1 3.3915 0.9973 1.7904 48 1 3.8414 -0.5999 2.5954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729448452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -29.495217 kcal Electronic energy + Delta-G solvation = -23904.753928 eV Core-core repulsion = 20767.066715 eV Total energy + Delta-G solvation = -3137.687213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.82269 -37.97679 -36.94965 -34.02341 -32.85243 -32.30604 -29.16839 -27.39928 -27.00062 -26.81925 -25.47119 -23.66955 -22.25591 -21.86834 -19.68008 -19.29590 -17.83124 -16.98773 -16.44188 -15.78125 -15.31362 -15.12924 -14.48033 -14.20879 -14.01530 -13.80914 -13.58515 -13.05997 -12.87224 -12.81992 -12.51954 -12.30535 -12.00701 -11.70495 -11.67145 -11.53050 -11.44676 -11.44640 -11.13883 -10.94582 -10.86742 -10.75022 -10.57791 -10.52973 -10.44832 -10.29364 -10.11123 -9.99917 -9.81402 -9.46307 -8.80714 -8.55522 -7.58913 -6.06544 -4.04206 3.29946 3.35909 3.37978 3.42901 3.78815 3.92176 4.41360 4.67420 4.91274 4.95499 4.96377 4.97959 5.01775 5.17212 5.26185 5.38796 5.46589 5.56922 5.60775 5.61919 5.66403 5.68619 5.75841 5.81792 5.88964 5.92077 5.95371 6.04690 6.06743 6.10426 6.12529 6.14077 6.15809 6.25793 6.34509 6.35736 6.50621 6.60652 6.62030 6.72656 6.81289 7.01780 7.44084 7.66241 8.34895 8.51112 8.96613 9.08271 9.54670 11.07057 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.005858 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.002786 B = 4778.294045 C = 5937.837687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 H 0.076 0.924 4 C -0.143 4.143 5 C 0.512 3.488 6 O -0.542 6.542 7 N -0.589 5.589 8 C 0.208 3.792 9 C -0.527 4.527 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.874 3.126 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.120 3.880 18 C -0.087 4.087 19 C -0.145 4.145 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.180 4.180 24 C -0.183 4.183 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.040 0.960 31 H 0.034 0.966 32 H 0.264 0.736 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 -14.748 10.772 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.063 4.063 3 H 0.095 0.905 4 C -0.183 4.183 5 C 0.299 3.701 6 O -0.420 6.420 7 N -0.320 5.320 8 C 0.088 3.912 9 C -0.565 4.565 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.538 5.538 13 Si 0.701 3.299 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.004 4.004 18 C -0.088 4.088 19 C -0.202 4.202 20 C -0.195 4.195 21 C -0.200 4.200 22 C -0.163 4.163 23 C -0.217 4.217 24 C -0.220 4.220 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.030 -14.060 10.680 18.110 hybrid contribution -0.455 0.068 -0.697 0.836 sum -4.485 -13.992 9.982 17.763 Atomic orbital electron populations 1.21941 0.94609 1.01063 1.03025 1.20447 0.96297 0.99006 0.90536 0.90532 1.21978 1.02429 1.00598 0.93322 1.20338 0.80301 0.85023 0.84422 1.90600 1.37940 1.27531 1.85933 1.47825 1.54403 1.21720 1.08024 1.19836 0.97587 0.90775 0.83019 1.21376 1.06003 1.16515 1.12636 0.90903 1.24846 0.95852 0.94894 0.97407 1.69899 1.32169 1.20847 1.30863 0.86886 0.83420 0.79086 0.80538 1.19983 1.21151 1.18982 1.21558 0.93643 0.83195 1.02054 1.21001 0.96269 0.95372 0.96192 1.22063 0.99984 1.01414 0.96767 1.21804 0.99786 0.96418 1.01488 1.22028 0.99029 1.01474 0.97484 1.22388 1.03333 0.98888 0.91698 1.22900 0.98198 1.03339 0.97266 1.23036 0.92315 1.02291 1.04324 0.89964 0.93763 0.93432 0.89633 0.88807 0.94268 0.94795 0.92648 0.90081 0.91108 0.92292 0.93562 0.91403 0.92777 0.92796 0.92374 0.92358 0.92975 0.92603 0.88107 0.88822 0.89237 0.88712 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.77 37.16 0.33 -1.80 16 2 C -0.04 -0.62 2.20 -90.62 -0.20 -0.82 16 3 H 0.08 1.27 7.78 -51.93 -0.40 0.86 16 4 C -0.14 -2.10 3.50 -27.88 -0.10 -2.20 16 5 C 0.51 10.11 6.19 -10.99 -0.07 10.05 16 6 O -0.54 -12.84 13.37 5.56 0.07 -12.77 16 7 N -0.59 -11.75 2.00 -175.07 -0.35 -12.10 16 8 C 0.21 5.00 3.00 -5.20 -0.02 4.99 16 9 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 10 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 13 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 14 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 17 C 0.12 1.87 4.58 -4.04 -0.02 1.85 16 18 C -0.09 -1.14 0.85 -154.51 -0.13 -1.27 16 19 C -0.15 -2.14 6.98 37.16 0.26 -1.88 16 20 C -0.14 -1.45 8.47 37.16 0.31 -1.13 16 21 C -0.14 -1.71 6.84 37.16 0.25 -1.46 16 22 C -0.14 -1.64 5.15 -90.58 -0.47 -2.11 16 23 C -0.18 -1.86 9.73 -26.73 -0.26 -2.12 16 24 C -0.18 -1.96 10.18 -26.69 -0.27 -2.23 16 25 H 0.08 1.42 5.79 -51.93 -0.30 1.12 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.61 7.29 -51.93 -0.38 0.24 16 28 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 29 H 0.09 1.17 4.65 -51.93 -0.24 0.93 16 30 H 0.04 0.90 4.37 -51.93 -0.23 0.67 16 31 H 0.03 0.89 6.78 -51.93 -0.35 0.53 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 34 H 0.07 0.95 6.14 -51.93 -0.32 0.63 16 35 H 0.06 0.90 7.71 -51.93 -0.40 0.50 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 1.17 5.76 -51.93 -0.30 0.87 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.82 6.75 -51.93 -0.35 0.47 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.58 6.48 -51.93 -0.34 0.25 16 44 H 0.10 1.03 8.11 -51.93 -0.42 0.61 16 45 H 0.09 1.00 7.61 -51.93 -0.39 0.60 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -32.20 359.67 -8.18 -40.38 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -8.62 Total: 2.65 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.81 Total: -13.53 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.42 Total: -39.14 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.07 Total: -12.77 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.20 -8.18 -40.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729448452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.888 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds