Wall clock time and date at job start Tue Mar 31 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47493 * 2 1 4 4 C 1.53003 * 109.47218 * 120.00500 * 2 1 3 5 5 N 1.46500 * 109.47203 * 59.74720 * 4 2 1 6 6 C 1.46495 * 120.00259 * 84.02467 * 5 4 2 7 7 C 1.50703 * 109.47130 * 86.29020 * 6 5 4 8 8 H 1.08001 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99902 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99885 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00283 * 0.02562 * 9 7 6 12 12 H 1.48499 * 109.47434 * 89.99615 * 11 9 7 13 13 H 1.48507 * 109.47352 * 210.00073 * 11 9 7 14 14 H 1.48502 * 109.47142 * 329.99516 * 11 9 7 15 15 C 1.34775 * 119.99786 * 264.02317 * 5 4 2 16 16 O 1.21285 * 119.99845 * 354.39511 * 15 5 4 17 17 C 1.50698 * 119.99897 * 174.38876 * 15 5 4 18 18 H 1.08989 * 109.47259 * 50.99632 * 17 15 5 19 19 C 1.53004 * 109.47275 * 290.99270 * 17 15 5 20 20 C 1.53010 * 109.46954 * 170.99918 * 17 15 5 21 21 C 1.54264 * 110.02711 * 297.16372 * 20 17 15 22 22 C 1.54888 * 104.19577 * 217.10877 * 21 20 17 23 23 C 1.54890 * 102.75097 * 37.94356 * 22 21 20 24 24 C 1.53879 * 110.02960 * 180.02562 * 20 17 15 25 25 H 1.09004 * 109.46584 * 302.83243 * 1 2 3 26 26 H 1.08997 * 109.46918 * 62.83167 * 1 2 3 27 27 H 1.08999 * 109.47210 * 182.83736 * 1 2 3 28 28 H 1.08997 * 109.47269 * 239.99958 * 2 1 3 29 29 H 1.09001 * 109.47252 * 180.02562 * 3 2 1 30 30 H 1.08994 * 109.47296 * 300.00005 * 3 2 1 31 31 H 1.09002 * 109.46982 * 60.00213 * 3 2 1 32 32 H 1.09001 * 109.46973 * 299.74209 * 4 2 1 33 33 H 1.09000 * 109.47027 * 179.74743 * 4 2 1 34 34 H 1.09000 * 109.47425 * 206.29477 * 6 5 4 35 35 H 1.08997 * 109.47202 * 326.29399 * 6 5 4 36 36 H 0.97005 * 120.00196 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.46457 * 49.03549 * 19 17 15 38 38 H 1.08994 * 109.47280 * 169.03699 * 19 17 15 39 39 H 1.08998 * 109.47076 * 289.04144 * 19 17 15 40 40 H 1.08994 * 110.01748 * 58.60870 * 20 17 15 41 41 H 1.09002 * 110.49133 * 335.78315 * 21 20 17 42 42 H 1.09003 * 110.48768 * 98.43259 * 21 20 17 43 43 H 1.08998 * 110.75622 * 279.63312 * 22 21 20 44 44 H 1.09003 * 110.92000 * 156.33158 * 22 21 20 45 45 H 1.08998 * 110.49066 * 203.38351 * 23 22 21 46 46 H 1.09001 * 110.59597 * 80.78943 * 23 22 21 47 47 H 1.09000 * 110.02762 * 238.56818 * 24 20 17 48 48 H 1.08997 * 110.03303 * 359.94077 * 24 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.5467 -2.1008 1.2522 6 6 2.2652 -3.1373 0.5068 7 6 3.3601 -3.7092 1.3702 8 1 3.5058 -3.3380 2.3739 9 6 4.1750 -4.7070 0.8791 10 7 5.1301 -5.2064 1.6328 11 14 3.9226 -5.3496 -0.8566 12 1 4.7447 -4.5541 -1.8034 13 1 4.3333 -6.7753 -0.9213 14 1 2.4889 -5.2304 -1.2249 15 6 0.4319 -2.4163 1.9406 16 8 -0.1056 -1.5831 2.6392 17 6 -0.1469 -3.8042 1.8424 18 1 0.6357 -4.5385 2.0324 19 6 -0.7192 -4.0201 0.4399 20 6 -1.2612 -3.9666 2.8783 21 6 -0.6845 -3.8218 4.3017 22 6 -1.4781 -4.8544 5.1400 23 6 -1.6291 -6.0455 4.1616 24 6 -1.8614 -5.3808 2.7895 25 1 -0.3633 0.5572 0.8636 26 1 -0.3633 0.4692 -0.9143 27 1 -0.3633 -1.0264 0.0509 28 1 1.8933 -0.5138 -0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6804 -0.2049 2.1392 33 1 3.1300 -0.7253 1.2469 34 1 1.5717 -3.9302 0.2267 35 1 2.7015 -2.7020 -0.3921 36 1 5.7033 -5.9087 1.2874 37 1 0.0176 -3.7165 -0.3038 38 1 -0.9596 -5.0744 0.3038 39 1 -1.6232 -3.4229 0.3205 40 1 -2.0376 -3.2200 2.7114 41 1 0.3789 -4.0612 4.3087 42 1 -0.8519 -2.8134 4.6804 43 1 -2.4543 -4.4574 5.4186 44 1 -0.9163 -5.1509 6.0258 45 1 -2.4858 -6.6601 4.4378 46 1 -0.7195 -6.6459 4.1452 47 1 -2.9294 -5.3206 2.5801 48 1 -1.3595 -5.9510 2.0078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749363577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:47 Heat of formation + Delta-G solvation = -70.654159 kcal Electronic energy + Delta-G solvation = -24214.478003 eV Core-core repulsion = 21075.006005 eV Total energy + Delta-G solvation = -3139.471998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.88808 -37.76979 -35.84259 -34.30616 -32.72563 -32.20304 -28.46556 -28.11250 -27.39487 -26.82490 -25.86518 -23.37676 -22.24801 -20.34018 -20.06577 -19.13547 -18.11280 -17.00395 -16.55541 -15.84004 -14.98053 -14.86960 -14.71945 -14.24933 -14.14009 -13.59153 -13.21156 -13.05512 -12.87451 -12.61197 -12.43695 -12.20167 -11.97131 -11.93578 -11.64894 -11.48169 -11.11285 -10.99023 -10.88941 -10.84744 -10.71987 -10.69196 -10.64422 -10.53902 -10.34896 -10.26041 -10.17970 -10.07005 -9.96650 -9.57029 -8.87744 -8.68594 -7.64295 -6.20726 -4.21496 3.16712 3.23903 3.25867 3.43854 3.89958 4.26474 4.84550 4.93075 4.99115 5.09639 5.20171 5.24633 5.31544 5.40969 5.46878 5.57403 5.72067 5.80211 5.85113 5.91804 5.94566 5.94896 5.97588 5.99405 6.03830 6.11336 6.15672 6.16611 6.23467 6.27111 6.28992 6.32119 6.38732 6.44492 6.48073 6.53066 6.60397 6.61506 6.67935 6.74520 6.77083 6.87869 7.42374 7.48038 8.19226 8.46675 8.84973 9.02864 9.39188 10.92103 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.008055 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.792348 B = 3475.080123 C = 5154.634345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.141 4.141 4 C 0.121 3.879 5 N -0.589 5.589 6 C 0.201 3.799 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.892 5.892 11 Si 0.869 3.131 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.263 1.263 15 C 0.527 3.473 16 O -0.565 6.565 17 C -0.106 4.106 18 H 0.106 0.894 19 C -0.147 4.147 20 C -0.066 4.066 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.495 3.170 -1.840 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.199 4.199 4 C -0.002 4.002 5 N -0.319 5.319 6 C 0.080 3.920 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.529 5.529 11 Si 0.696 3.304 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.188 1.188 15 C 0.316 3.684 16 O -0.446 6.446 17 C -0.127 4.127 18 H 0.124 0.876 19 C -0.204 4.204 20 C -0.085 4.085 21 C -0.151 4.151 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.159 4.159 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.598 3.458 -1.490 12.194 hybrid contribution 0.310 -0.551 -1.022 1.201 sum -11.288 2.907 -2.511 11.924 Atomic orbital electron populations 1.21748 0.95216 1.01838 1.00632 1.21494 0.96296 0.95971 0.99456 1.21741 1.00946 0.95835 1.01384 1.21362 0.99106 0.82342 0.97408 1.47825 1.25345 1.09093 1.49630 1.19960 0.92978 0.86821 0.92276 1.21396 1.14080 1.20147 1.02025 0.90477 1.24872 0.94662 0.95954 0.97269 1.69896 1.19002 1.27351 1.36677 0.86956 0.79304 0.78797 0.85368 1.19978 1.20894 1.18778 1.20354 0.80091 0.89445 0.78532 1.90568 1.61875 1.51452 1.40685 1.21422 0.98771 0.96168 0.96360 0.87567 1.21926 1.00935 1.01970 0.95556 1.21528 0.96407 0.96283 0.94321 1.22373 0.99650 0.99048 0.94058 1.22502 0.99907 0.96082 0.97814 1.22348 1.01182 0.97511 0.95181 1.22255 1.00149 0.95964 0.97565 0.92594 0.93867 0.92835 0.91361 0.92624 0.93014 0.92740 0.90498 0.90621 0.93744 0.95766 0.92426 0.91511 0.91845 0.92766 0.90891 0.91548 0.91176 0.92096 0.92039 0.92368 0.91559 0.92294 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.38 37.16 0.31 -1.77 16 2 C -0.11 -1.73 3.16 -90.62 -0.29 -2.02 16 3 C -0.14 -1.80 9.19 37.16 0.34 -1.46 16 4 C 0.12 2.22 5.06 -4.04 -0.02 2.20 16 5 N -0.59 -11.90 2.12 -175.06 -0.37 -12.28 16 6 C 0.20 4.40 3.56 -5.19 -0.02 4.38 16 7 C -0.54 -14.18 9.94 -34.44 -0.34 -14.52 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 9 C 0.08 2.04 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 11 Si 0.87 19.76 27.47 -169.99 -4.67 15.09 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 15 C 0.53 10.45 4.93 -10.99 -0.05 10.39 16 16 O -0.57 -11.98 13.88 5.55 0.08 -11.90 16 17 C -0.11 -1.86 1.17 -91.77 -0.11 -1.97 16 18 H 0.11 2.08 7.52 -51.94 -0.39 1.69 16 19 C -0.15 -2.23 8.23 37.16 0.31 -1.93 16 20 C -0.07 -1.04 2.07 -89.50 -0.19 -1.23 16 21 C -0.11 -1.85 5.31 -25.07 -0.13 -1.98 16 22 C -0.13 -1.67 6.91 -24.74 -0.17 -1.84 16 23 C -0.12 -1.58 6.83 -25.10 -0.17 -1.75 16 24 C -0.12 -1.61 6.00 -25.64 -0.15 -1.76 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.89 6.39 -51.93 -0.33 0.56 16 28 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 1.45 7.19 -51.93 -0.37 1.08 16 33 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 34 H 0.04 0.95 3.45 -51.93 -0.18 0.77 16 35 H 0.02 0.53 7.47 -51.93 -0.39 0.14 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.07 1.08 5.84 -51.93 -0.30 0.78 16 38 H 0.06 0.86 6.85 -51.93 -0.36 0.50 16 39 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.07 1.18 7.97 -51.93 -0.41 0.76 16 41 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 42 H 0.07 1.21 7.64 -51.93 -0.40 0.82 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 LS Contribution 361.02 15.07 5.44 5.44 Total: -1.00 -28.54 361.02 -8.48 -37.02 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -8.95 Total: 5.10 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -0.78 Total: -13.31 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.40 Total: -37.44 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.54 -8.48 -37.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749363577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.637 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds