Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47487 * 2 1 4 4 C 1.52994 * 109.47412 * 120.00581 * 2 1 3 5 5 N 1.46501 * 109.47302 * 64.99657 * 4 2 1 6 6 C 1.46505 * 119.99869 * 264.92434 * 5 4 2 7 7 C 1.50706 * 109.46946 * 264.18668 * 6 5 4 8 8 H 1.07995 * 119.99899 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99601 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00516 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99803 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47351 * 59.99392 * 11 9 7 13 13 H 1.48503 * 109.47340 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47043 * 299.99634 * 11 9 7 15 15 C 1.34776 * 120.00238 * 84.92002 * 5 4 2 16 16 O 1.21281 * 119.99820 * 3.73494 * 15 5 4 17 17 C 1.50698 * 120.00218 * 183.72816 * 15 5 4 18 18 H 1.09002 * 109.47277 * 311.05194 * 17 15 5 19 19 C 1.53004 * 109.46789 * 71.04859 * 17 15 5 20 20 C 1.53001 * 109.47361 * 191.04683 * 17 15 5 21 21 C 1.54892 * 110.48343 * 63.24162 * 20 17 15 22 22 C 1.55237 * 102.58433 * 156.67836 * 21 20 17 23 23 C 1.54269 * 104.23300 * 322.08400 * 22 21 20 24 24 C 1.53874 * 106.59527 * 23.61145 * 23 22 21 25 25 H 1.08994 * 109.47314 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46666 * 299.99811 * 1 2 3 27 27 H 1.08996 * 109.47046 * 59.99230 * 1 2 3 28 28 H 1.09009 * 109.47099 * 240.00502 * 2 1 3 29 29 H 1.08996 * 109.47339 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47606 * 300.00426 * 3 2 1 31 31 H 1.08999 * 109.47014 * 60.00402 * 3 2 1 32 32 H 1.08998 * 109.47213 * 304.99976 * 4 2 1 33 33 H 1.09001 * 109.47387 * 184.99821 * 4 2 1 34 34 H 1.09006 * 109.47343 * 24.18711 * 6 5 4 35 35 H 1.09003 * 109.47207 * 144.18731 * 6 5 4 36 36 H 0.96996 * 120.00353 * 179.97438 * 10 9 7 37 37 H 1.08999 * 109.47062 * 52.03717 * 19 17 15 38 38 H 1.08998 * 109.47023 * 172.03783 * 19 17 15 39 39 H 1.08995 * 109.47228 * 292.03436 * 19 17 15 40 40 H 1.09004 * 110.43231 * 300.70826 * 20 17 15 41 41 H 1.08991 * 110.75789 * 275.06668 * 21 20 17 42 42 H 1.09003 * 110.75418 * 38.44143 * 21 20 17 43 43 H 1.09005 * 110.46604 * 203.39615 * 22 21 20 44 44 H 1.08999 * 110.47350 * 80.77443 * 22 21 20 45 45 H 1.08997 * 110.03307 * 264.32646 * 23 22 21 46 46 H 1.08995 * 110.07376 * 142.91686 * 23 22 21 47 47 H 1.08993 * 110.03242 * 240.70926 * 24 23 22 48 48 H 1.09005 * 110.03122 * 119.28754 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6524 -2.1329 1.1904 6 6 0.4290 -2.5850 1.8576 7 6 0.7714 -3.1257 3.2220 8 1 1.7976 -3.1317 3.5585 9 6 -0.2255 -3.6129 4.0405 10 7 -1.4752 -3.6052 3.6308 11 14 0.1988 -4.2825 5.7319 12 1 0.8376 -3.2140 6.5414 13 1 -1.0413 -4.7409 6.4082 14 1 1.1374 -5.4247 5.5909 15 6 2.4213 -3.0157 0.5225 16 8 3.4683 -2.6552 0.0277 17 6 1.9801 -4.4506 0.3906 18 1 1.6860 -4.8317 1.3685 19 6 0.7900 -4.5322 -0.5675 20 6 3.1350 -5.2909 -0.1581 21 6 4.3245 -5.2907 0.8340 22 6 5.0810 -6.5923 0.4552 23 6 3.9603 -7.6016 0.1305 24 6 2.7230 -6.7740 -0.2594 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6054 -0.2619 2.1369 33 1 3.1263 -0.6444 1.2950 34 1 -0.2594 -1.7462 1.9615 35 1 -0.0405 -3.3689 1.2634 36 1 -2.1764 -3.9483 4.2065 37 1 1.0382 -4.0240 -1.4993 38 1 0.5605 -5.5776 -0.7737 39 1 -0.0766 -4.0530 -0.1120 40 1 3.4501 -4.9150 -1.1316 41 1 4.9556 -4.4155 0.6802 42 1 3.9690 -5.3359 1.8634 43 1 5.6791 -6.9439 1.2959 44 1 5.7103 -6.4268 -0.4192 45 1 3.7409 -8.2107 1.0074 46 1 4.2603 -8.2390 -0.7011 47 1 1.9032 -6.9816 0.4281 48 1 2.4231 -7.0093 -1.2806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749363579.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = -77.094871 kcal Electronic energy + Delta-G solvation = -24092.661303 eV Core-core repulsion = 20952.910014 eV Total energy + Delta-G solvation = -3139.751289 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.67873 -37.65874 -35.86589 -34.16381 -32.63805 -32.14866 -28.40577 -27.69439 -27.18321 -26.76781 -25.64352 -23.51665 -22.28122 -20.34397 -20.01360 -19.21701 -17.98299 -16.74011 -16.12808 -15.70766 -15.12030 -14.63173 -14.49233 -14.43080 -14.15265 -13.47773 -13.13405 -12.92307 -12.70870 -12.56079 -12.33057 -12.13556 -11.94186 -11.73128 -11.45300 -11.24783 -11.08565 -11.00180 -10.87757 -10.80494 -10.66773 -10.63613 -10.52796 -10.41255 -10.26039 -10.22505 -10.09329 -9.98080 -9.91113 -9.64038 -8.77090 -8.49136 -7.58879 -6.16788 -4.23342 3.24247 3.29240 3.32005 3.56034 4.03168 4.35045 4.90151 4.97372 5.05400 5.15536 5.25104 5.33530 5.46276 5.50530 5.55721 5.71686 5.77372 5.89305 5.92743 5.93711 5.97792 5.98842 6.05565 6.08153 6.13635 6.18249 6.20026 6.27108 6.32989 6.34747 6.38002 6.40067 6.46855 6.57328 6.58124 6.65224 6.65452 6.75811 6.76840 6.90128 6.98100 7.31795 7.64418 7.79891 8.10655 8.44354 8.83331 9.15846 9.44269 10.89352 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.009878 B = 0.008128 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.868522 B = 3443.932294 C = 5353.794877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.594 5.594 6 C 0.228 3.772 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.525 3.475 16 O -0.575 6.575 17 C -0.102 4.102 18 H 0.110 0.890 19 C -0.145 4.145 20 C -0.067 4.067 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.121 4.121 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.265 0.735 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 -0.859 -7.191 8.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.001 3.999 5 N -0.324 5.324 6 C 0.108 3.892 7 C -0.575 4.575 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.720 3.280 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.313 3.687 16 O -0.457 6.457 17 C -0.123 4.123 18 H 0.128 0.872 19 C -0.202 4.202 20 C -0.086 4.086 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.158 4.158 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.329 -0.716 -7.365 9.119 hybrid contribution -0.036 -0.366 1.156 1.213 sum 5.292 -1.082 -6.209 8.230 Atomic orbital electron populations 1.21857 0.95095 1.02424 1.00752 1.21483 0.96231 0.95755 0.99542 1.21745 1.00768 0.96059 1.01313 1.21314 0.99820 0.81841 0.96877 1.48188 1.26330 1.06798 1.51068 1.19702 0.81052 0.96304 0.92106 1.21498 0.94102 1.41436 1.00485 0.92323 1.24907 0.94824 0.95601 0.98344 1.69903 0.99619 1.46069 1.37356 0.86634 0.77762 0.79524 0.84042 1.20204 1.21168 1.20074 1.20433 0.83248 0.87655 0.77326 1.90547 1.24278 1.80462 1.50398 1.21324 0.95976 0.92771 1.02252 0.87218 1.21880 0.97895 1.02061 0.98374 1.21727 0.94150 0.93418 0.99292 1.22603 0.96805 0.97097 0.99005 1.22409 0.97365 0.95952 1.00471 1.22116 0.95599 0.97791 1.00557 1.22229 0.97819 0.94784 1.00999 0.91867 0.92775 0.93747 0.91397 0.92882 0.93076 0.92771 0.90755 0.91489 0.94410 0.93452 0.92531 0.93371 0.92116 0.90710 0.90783 0.90781 0.91693 0.92310 0.92141 0.92162 0.92522 0.91386 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.34 37.16 0.31 -1.96 16 2 C -0.11 -1.78 3.09 -90.63 -0.28 -2.06 16 3 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 4 C 0.13 2.34 4.80 -4.04 -0.02 2.32 16 5 N -0.59 -12.36 2.21 -175.05 -0.39 -12.75 16 6 C 0.23 5.25 3.73 -5.19 -0.02 5.23 16 7 C -0.54 -13.76 8.61 -34.44 -0.30 -14.06 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -24.09 13.29 55.43 0.74 -23.36 16 11 Si 0.89 20.50 29.54 -169.99 -5.02 15.47 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C 0.52 10.87 6.48 -10.99 -0.07 10.80 16 16 O -0.58 -12.78 14.40 5.56 0.08 -12.70 16 17 C -0.10 -1.89 1.30 -91.77 -0.12 -2.01 16 18 H 0.11 2.27 7.00 -51.93 -0.36 1.91 16 19 C -0.14 -2.42 8.85 37.16 0.33 -2.09 16 20 C -0.07 -1.10 1.97 -88.96 -0.18 -1.28 16 21 C -0.12 -1.95 5.63 -24.55 -0.14 -2.09 16 22 C -0.12 -1.68 6.84 -24.88 -0.17 -1.85 16 23 C -0.12 -1.57 6.80 -25.61 -0.17 -1.74 16 24 C -0.12 -1.69 5.21 -25.62 -0.13 -1.82 16 25 H 0.06 1.11 6.39 -51.93 -0.33 0.78 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 33 H 0.07 1.28 7.53 -51.93 -0.39 0.89 16 34 H 0.04 0.92 6.82 -51.93 -0.35 0.56 16 35 H 0.05 1.11 4.33 -51.93 -0.22 0.89 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 37 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 38 H 0.06 0.89 6.99 -51.93 -0.36 0.53 16 39 H 0.07 1.36 5.50 -51.93 -0.29 1.07 16 40 H 0.07 1.26 7.98 -51.93 -0.41 0.85 16 41 H 0.07 1.34 7.19 -51.93 -0.37 0.96 16 42 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.99 7.71 -51.93 -0.40 0.59 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -27.15 364.41 -8.77 -35.92 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.96 Total: 4.42 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.71 Total: -12.51 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.35 Total: -36.10 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.15 -8.77 -35.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749363579.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.170 kcal (2) G-P(sol) polarization free energy of solvation -27.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds