Wall clock time and date at job start Tue Mar 31 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47092 * 2 1 4 4 C 1.52999 * 109.46936 * 119.99654 * 2 1 3 5 5 N 1.46506 * 109.47068 * 63.35368 * 4 2 1 6 6 C 1.46494 * 119.99654 * 264.62466 * 5 4 2 7 7 C 1.50699 * 109.47085 * 269.99462 * 6 5 4 8 8 H 1.08008 * 119.99891 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00411 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00014 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 120.00332 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47306 * 180.02562 * 11 9 7 13 13 H 1.48500 * 109.46766 * 300.00303 * 11 9 7 14 14 H 1.48501 * 109.47009 * 59.99866 * 11 9 7 15 15 C 1.34775 * 120.00024 * 84.61756 * 5 4 2 16 16 O 1.21284 * 120.00072 * 175.25381 * 15 5 4 17 17 C 1.50698 * 120.00328 * 355.25976 * 15 5 4 18 18 C 1.53002 * 109.47408 * 185.56348 * 17 15 5 19 19 H 1.08998 * 110.01234 * 305.69585 * 18 17 15 20 20 C 1.54265 * 110.03075 * 67.09055 * 18 17 15 21 21 C 1.54888 * 104.19419 * 142.89770 * 20 18 17 22 22 C 1.54889 * 102.74895 * 322.05816 * 21 20 18 23 23 H 1.09006 * 110.48036 * 279.26511 * 22 21 20 24 24 C 1.52997 * 110.48984 * 156.75612 * 22 21 20 25 25 C 1.53874 * 110.03294 * 184.31017 * 18 17 15 26 26 H 1.09007 * 109.47095 * 300.81072 * 1 2 3 27 27 H 1.08994 * 109.47150 * 60.80683 * 1 2 3 28 28 H 1.08993 * 109.47299 * 180.81170 * 1 2 3 29 29 H 1.08997 * 109.46601 * 240.00189 * 2 1 3 30 30 H 1.09000 * 109.47283 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46997 * 300.00266 * 3 2 1 32 32 H 1.09000 * 109.47558 * 59.99686 * 3 2 1 33 33 H 1.09001 * 109.47486 * 303.35111 * 4 2 1 34 34 H 1.09001 * 109.46795 * 183.34900 * 4 2 1 35 35 H 1.09000 * 109.47318 * 150.00415 * 6 5 4 36 36 H 1.08995 * 109.47701 * 29.99562 * 6 5 4 37 37 H 0.96997 * 119.99936 * 359.97438 * 10 9 7 38 38 H 1.09001 * 109.47148 * 305.56335 * 17 15 5 39 39 H 1.09003 * 109.47011 * 65.55849 * 17 15 5 40 40 H 1.09001 * 110.48152 * 261.57106 * 20 18 17 41 41 H 1.09000 * 110.48900 * 24.08549 * 20 18 17 42 42 H 1.08998 * 110.75640 * 80.37139 * 21 20 18 43 43 H 1.08993 * 110.75694 * 203.73696 * 21 20 18 44 44 H 1.08999 * 109.47301 * 61.45097 * 24 22 21 45 45 H 1.08994 * 109.47370 * 181.45291 * 24 22 21 46 46 H 1.09005 * 109.46719 * 301.44805 * 24 22 21 47 47 H 1.08998 * 110.03056 * 359.97438 * 25 18 17 48 48 H 1.09002 * 110.03386 * 121.42870 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6187 -2.1238 1.2096 6 6 0.3978 -2.5417 1.9030 7 6 0.7352 -2.9454 3.3151 8 1 1.7570 -2.8952 3.6616 9 6 -0.2605 -3.3777 4.1652 10 7 -1.5047 -3.4383 3.7435 11 14 0.1577 -3.8775 5.9159 12 1 -1.0799 -4.3012 6.6188 13 1 1.1234 -5.0054 5.8914 14 1 0.7623 -2.7237 6.6290 15 6 2.3543 -3.0296 0.5352 16 8 2.0542 -4.2040 0.5732 17 6 3.5499 -2.5831 -0.2662 18 6 4.1201 -3.7745 -1.0385 19 1 4.3322 -4.5957 -0.3539 20 6 3.1185 -4.2322 -2.1188 21 6 4.0118 -4.6403 -3.3165 22 6 5.1377 -3.5772 -3.2811 23 1 4.8026 -2.6511 -3.7481 24 6 6.3934 -4.1035 -3.9790 25 6 5.4046 -3.3583 -1.7764 26 1 -0.3634 0.5264 0.8827 27 1 -0.3633 0.5012 -0.8971 28 1 -0.3633 -1.0275 0.0146 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6285 -0.2432 2.1383 34 1 3.1284 -0.6695 1.2798 35 1 -0.0458 -3.3885 1.3793 36 1 -0.3111 -1.7140 1.9213 37 1 -1.7220 -3.1785 2.8346 38 1 3.2472 -1.8063 -0.9684 39 1 4.3113 -2.1881 0.4065 40 1 2.5404 -5.0861 -1.7657 41 1 2.4558 -3.4125 -2.3965 42 1 4.4202 -5.6404 -3.1707 43 1 3.4547 -4.5821 -4.2514 44 1 6.1670 -4.3139 -5.0242 45 1 7.1822 -3.3535 -3.9219 46 1 6.7256 -5.0182 -3.4879 47 1 5.6215 -2.3075 -1.5847 48 1 6.2399 -3.9783 -1.4507 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759171082.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:38 Heat of formation + Delta-G solvation = -81.635282 kcal Electronic energy + Delta-G solvation = -23489.032980 eV Core-core repulsion = 20349.084805 eV Total energy + Delta-G solvation = -3139.948176 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.66203 -38.12491 -36.32438 -33.82531 -32.50767 -32.23232 -29.64234 -27.92740 -26.92400 -26.53290 -25.26973 -24.08977 -22.51547 -20.51992 -20.14712 -19.34468 -18.46871 -16.91401 -16.33461 -15.75289 -15.19268 -15.07292 -14.67614 -14.20515 -13.74690 -13.64421 -13.55489 -13.16180 -13.01129 -12.90493 -12.59990 -12.31022 -12.12859 -12.02520 -11.70476 -11.62271 -11.43207 -10.95799 -10.94784 -10.84026 -10.78520 -10.71356 -10.66409 -10.57874 -10.52327 -10.44308 -10.31753 -10.15320 -10.07809 -9.06202 -8.83255 -8.34343 -7.54199 -6.34309 -4.05584 3.43365 3.46999 3.49482 3.66203 3.91859 4.56164 4.57755 4.67206 4.73831 4.96952 5.08138 5.11471 5.17888 5.30935 5.35284 5.40475 5.43718 5.52909 5.56610 5.64794 5.66871 5.71774 5.76375 5.80172 5.82319 5.88436 5.90963 5.98941 6.03311 6.08645 6.09895 6.11160 6.18607 6.20619 6.23343 6.41136 6.47905 6.51159 6.57454 6.66676 6.90310 7.17115 7.49880 8.10071 8.38311 8.49124 8.82515 9.12508 9.63692 11.02743 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.004808 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.428038 B = 5822.598597 C = 6865.642923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.119 3.881 5 N -0.594 5.594 6 C 0.237 3.763 7 C -0.603 4.603 8 H 0.049 0.951 9 C 0.019 3.981 10 N -0.911 5.911 11 Si 1.070 2.930 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.289 1.289 15 C 0.504 3.496 16 O -0.538 6.538 17 C -0.134 4.134 18 C -0.076 4.076 19 H 0.079 0.921 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.098 4.098 23 H 0.071 0.929 24 C -0.143 4.143 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.028 0.972 36 H 0.025 0.975 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.475 6.650 -13.420 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.201 4.201 4 C -0.006 4.006 5 N -0.325 5.325 6 C 0.117 3.883 7 C -0.642 4.642 8 H 0.068 0.932 9 C -0.185 4.185 10 N -0.547 5.547 11 Si 0.898 3.102 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.215 1.215 15 C 0.291 3.709 16 O -0.416 6.416 17 C -0.174 4.174 18 C -0.095 4.095 19 H 0.098 0.902 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.116 4.116 23 H 0.089 0.911 24 C -0.201 4.201 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.630 5.457 -11.954 17.548 hybrid contribution 0.701 0.763 -1.324 1.682 sum 12.330 6.220 -13.278 19.158 Atomic orbital electron populations 1.21856 0.94832 1.02606 1.00999 1.21636 0.96921 0.95967 0.99050 1.21774 1.00628 0.95902 1.01792 1.21496 0.98716 0.82549 0.97821 1.48014 1.26815 1.06908 1.50751 1.19340 0.81473 0.95156 0.92321 1.22269 0.96405 1.48446 0.97067 0.93230 1.25775 0.93128 0.94382 1.05211 1.70806 1.18865 1.45324 1.19738 0.83529 0.75570 0.76434 0.74646 1.20706 1.21466 1.21518 1.20410 0.84334 0.86140 0.80026 1.90652 1.70341 1.17082 1.63504 1.21936 0.96999 0.99311 0.99200 1.21505 0.94117 0.97148 0.96700 0.90240 1.22348 0.97105 1.01477 0.94061 1.22590 0.96430 0.98525 0.98332 1.21985 0.95346 0.98683 0.95606 0.91101 1.21804 0.97285 1.00873 1.00119 1.22331 0.97536 1.01108 0.94414 0.92599 0.93483 0.91881 0.91428 0.92831 0.92824 0.92480 0.90028 0.91852 0.95356 0.95758 0.92319 0.89709 0.89840 0.90818 0.92275 0.91617 0.92060 0.92942 0.92962 0.92677 0.91916 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.29 37.16 0.31 -1.86 16 2 C -0.12 -1.57 3.00 -90.62 -0.27 -1.84 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C 0.12 1.94 4.61 -4.04 -0.02 1.92 16 5 N -0.59 -12.50 2.15 -175.06 -0.38 -12.88 16 6 C 0.24 6.14 3.46 -5.20 -0.02 6.12 16 7 C -0.60 -17.47 9.39 -34.44 -0.32 -17.79 16 8 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 10 N -0.91 -28.03 13.65 55.43 0.76 -27.27 16 11 Si 1.07 25.99 29.90 -169.99 -5.08 20.91 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.50 10.46 7.34 -10.99 -0.08 10.37 16 16 O -0.54 -13.52 14.60 5.55 0.08 -13.44 16 17 C -0.13 -2.01 3.43 -27.88 -0.10 -2.11 16 18 C -0.08 -1.07 2.55 -89.50 -0.23 -1.30 16 19 H 0.08 1.30 7.87 -51.93 -0.41 0.89 16 20 C -0.11 -1.60 5.47 -25.07 -0.14 -1.74 16 21 C -0.12 -1.37 6.33 -24.74 -0.16 -1.53 16 22 C -0.10 -0.98 3.45 -88.91 -0.31 -1.29 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 C -0.14 -1.23 9.13 37.16 0.34 -0.89 16 25 C -0.12 -1.28 6.04 -25.56 -0.15 -1.43 16 26 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.11 6.26 -51.93 -0.32 0.79 16 29 H 0.07 0.90 6.26 -51.93 -0.33 0.57 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 34 H 0.06 0.90 6.86 -51.93 -0.36 0.54 16 35 H 0.03 0.83 7.36 -51.93 -0.38 0.45 16 36 H 0.02 0.63 6.48 -51.93 -0.34 0.29 16 37 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 38 H 0.08 1.11 6.01 -51.93 -0.31 0.80 16 39 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 40 H 0.07 1.23 7.75 -51.93 -0.40 0.83 16 41 H 0.06 0.85 7.77 -51.93 -0.40 0.45 16 42 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.47 8.11 -51.93 -0.42 0.05 16 47 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 48 H 0.06 0.67 7.82 -51.93 -0.41 0.27 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -32.75 366.97 -9.00 -41.75 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -9.01 Total: -0.52 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.90 Total: -14.09 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.38 Total: -40.15 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.75 -9.00 -41.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759171082.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.880 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds