Wall clock time and date at job start Tue Mar 31 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47003 * 2 1 4 4 C 1.52997 * 109.46745 * 119.99502 * 2 1 3 5 5 N 1.46507 * 109.46878 * 174.10020 * 4 2 1 6 6 C 1.46500 * 119.99981 * 276.68378 * 5 4 2 7 7 C 1.50693 * 109.47510 * 270.00083 * 6 5 4 8 8 H 1.08003 * 120.00142 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99838 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00214 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99806 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47330 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47189 * 120.00085 * 11 9 7 14 14 H 1.48497 * 109.47212 * 240.00164 * 11 9 7 15 15 C 1.34776 * 119.99617 * 96.69130 * 5 4 2 16 16 O 1.21288 * 119.99422 * 185.41674 * 15 5 4 17 17 C 1.50700 * 120.00562 * 5.41204 * 15 5 4 18 18 C 1.53001 * 109.47047 * 174.85111 * 17 15 5 19 19 H 1.08994 * 110.43822 * 303.91267 * 18 17 15 20 20 C 1.54267 * 110.48397 * 66.45729 * 18 17 15 21 21 C 1.53882 * 106.63837 * 142.39468 * 20 18 17 22 22 C 1.54370 * 106.54159 * 0.03562 * 21 20 18 23 23 H 1.08997 * 110.50889 * 95.04768 * 22 21 20 24 24 C 1.53009 * 110.57141 * 217.62826 * 22 21 20 25 25 C 1.54880 * 104.20326 * 336.35069 * 22 21 20 26 26 H 1.08999 * 109.47850 * 300.00180 * 1 2 3 27 27 H 1.08999 * 109.47133 * 60.00789 * 1 2 3 28 28 H 1.09002 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47235 * 239.99561 * 2 1 3 30 30 H 1.09004 * 109.47072 * 304.70745 * 3 2 1 31 31 H 1.08997 * 109.47534 * 64.70695 * 3 2 1 32 32 H 1.09000 * 109.47321 * 184.71237 * 3 2 1 33 33 H 1.09004 * 109.47216 * 54.10212 * 4 2 1 34 34 H 1.08999 * 109.47771 * 294.10121 * 4 2 1 35 35 H 1.09005 * 109.46826 * 30.00625 * 6 5 4 36 36 H 1.09005 * 109.46629 * 149.99624 * 6 5 4 37 37 H 0.97000 * 120.00269 * 180.02562 * 10 9 7 38 38 H 1.08998 * 109.46619 * 54.85458 * 17 15 5 39 39 H 1.09004 * 109.46839 * 294.85430 * 17 15 5 40 40 H 1.08994 * 110.03175 * 261.69806 * 20 18 17 41 41 H 1.09001 * 110.03542 * 23.08395 * 20 18 17 42 42 H 1.08996 * 110.02731 * 119.30654 * 21 20 18 43 43 H 1.09005 * 110.02911 * 240.73772 * 21 20 18 44 44 H 1.09001 * 109.46984 * 174.83127 * 24 22 21 45 45 H 1.08998 * 109.47132 * 294.83097 * 24 22 21 46 46 H 1.09000 * 109.47147 * 54.83488 * 24 22 21 47 47 H 1.09004 * 110.76060 * 279.65755 * 25 22 21 48 48 H 1.09001 * 110.76174 * 156.28195 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.4981 -0.8453 1.1805 6 6 4.1048 -1.9452 0.4265 7 6 4.2991 -3.1308 1.3361 8 1 4.0002 -3.0713 2.3722 9 6 4.8575 -4.2920 0.8453 10 7 5.2211 -4.3647 -0.4164 11 14 5.0978 -5.7619 1.9727 12 1 4.6112 -5.4258 3.3349 13 1 4.3331 -6.9205 1.4453 14 1 6.5406 -6.1078 2.0345 15 6 4.2813 0.0522 1.8110 16 8 5.4856 0.0080 1.6739 17 6 3.6608 1.1106 2.6860 18 6 4.7652 1.9117 3.3785 19 1 5.4217 1.2476 3.9406 20 6 5.5737 2.7220 2.3444 21 6 5.9106 4.0696 3.0065 22 6 5.2949 4.0302 4.4215 23 1 6.0371 3.7082 5.1520 24 6 4.7315 5.4012 4.8011 25 6 4.1551 2.9874 4.3111 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.6094 1.9801 -0.8448 31 1 1.7472 1.9314 0.9291 32 1 3.1267 1.4437 -0.0844 33 1 1.5929 -1.7138 1.3038 34 1 1.7654 -0.1500 2.1361 35 1 3.4501 -2.2241 -0.3993 36 1 5.0702 -1.6268 0.0331 37 1 5.6136 -5.1817 -0.7618 38 1 3.0300 0.6364 3.4379 39 1 3.0560 1.7796 2.0737 40 1 6.4912 2.1917 2.0892 41 1 4.9757 2.8856 1.4479 42 1 6.9915 4.1932 3.0725 43 1 5.4753 4.8871 2.4317 44 1 4.2213 5.3310 5.7618 45 1 5.5465 6.1213 4.8743 46 1 4.0254 5.7278 4.0378 47 1 3.2676 3.4314 3.8599 48 1 3.9224 2.5644 5.2883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759171084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:42 Heat of formation + Delta-G solvation = -77.256643 kcal Electronic energy + Delta-G solvation = -23481.040307 eV Core-core repulsion = 20341.282004 eV Total energy + Delta-G solvation = -3139.758304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.59261 -38.02623 -36.19147 -33.68748 -32.40528 -32.17582 -29.59328 -28.01408 -27.07665 -26.60369 -25.40865 -24.10467 -22.42597 -20.21473 -19.98019 -19.61672 -17.95753 -16.44749 -16.36315 -16.02327 -15.27265 -14.86834 -14.47882 -14.32171 -13.92393 -13.72243 -13.39015 -13.15928 -13.06886 -12.85983 -12.43362 -12.26455 -12.15968 -11.91104 -11.66656 -11.46874 -11.24716 -10.98356 -10.88253 -10.85261 -10.74670 -10.70499 -10.62796 -10.53398 -10.49280 -10.30791 -10.29132 -10.10985 -10.08592 -9.54660 -8.71052 -8.41085 -7.53927 -6.01562 -4.06128 3.30657 3.38132 3.41739 3.55592 4.02343 4.46714 4.64198 4.71048 4.78594 5.09097 5.16475 5.17691 5.25920 5.32411 5.37938 5.45477 5.51816 5.54775 5.63155 5.66066 5.67809 5.74508 5.78743 5.81747 5.86061 5.91678 5.95578 5.98548 6.06475 6.09645 6.14956 6.21552 6.26276 6.28925 6.30435 6.43467 6.48385 6.59807 6.65512 6.73022 7.15049 7.51778 7.63595 7.96117 8.28233 8.53869 8.94990 9.21485 9.59326 11.06322 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.004895 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.326315 B = 5718.667069 C = 6877.108037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.246 3.754 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.508 3.492 16 O -0.542 6.542 17 C -0.143 4.143 18 C -0.074 4.074 19 H 0.078 0.922 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.098 4.098 23 H 0.071 0.929 24 C -0.143 4.143 25 C -0.116 4.116 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.685 16.337 6.086 19.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.204 4.204 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.127 3.873 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.295 3.705 16 O -0.420 6.420 17 C -0.183 4.183 18 C -0.092 4.092 19 H 0.097 0.903 20 C -0.148 4.148 21 C -0.159 4.159 22 C -0.117 4.117 23 H 0.090 0.910 24 C -0.200 4.200 25 C -0.153 4.153 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.951 16.167 5.862 18.549 hybrid contribution 0.049 -1.033 0.495 1.147 sum -6.902 15.134 6.357 17.807 Atomic orbital electron populations 1.21759 0.95120 1.01799 1.01305 1.21559 0.95322 0.96510 1.00240 1.21962 1.01507 0.96020 1.00930 1.21516 0.81967 1.00878 0.96475 1.48188 1.05147 1.28139 1.51512 1.19214 0.94428 0.82667 0.90986 1.21494 1.40834 0.97289 0.96724 0.92517 1.24929 0.95320 0.98717 0.95139 1.69943 1.42243 1.27718 1.13472 0.86473 0.77919 0.82366 0.80847 1.19836 1.20995 1.20915 1.20337 0.87267 0.82187 0.80738 1.90640 1.14585 1.73456 1.63299 1.22020 0.99288 0.97687 0.99343 1.21700 0.95888 0.95669 0.95981 0.90350 1.22109 1.01040 0.94209 0.97473 1.22276 1.00158 0.98042 0.95409 1.21968 0.97459 0.94986 0.97256 0.91019 1.21801 1.00577 0.96535 1.01079 1.22641 0.97646 0.95803 0.99253 0.92916 0.92898 0.92481 0.90511 0.93085 0.92785 0.92470 0.90451 0.91497 0.95287 0.93909 0.92844 0.89984 0.88980 0.90742 0.92494 0.92313 0.92238 0.92928 0.93011 0.92749 0.91537 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.12 -1.64 3.11 -90.62 -0.28 -1.92 16 3 C -0.15 -1.89 7.59 37.16 0.28 -1.61 16 4 C 0.12 1.89 4.89 -4.04 -0.02 1.87 16 5 N -0.60 -12.59 2.26 -175.05 -0.40 -12.98 16 6 C 0.25 6.48 5.22 -5.20 -0.03 6.45 16 7 C -0.52 -14.97 9.39 -34.44 -0.32 -15.30 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 11 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.51 10.44 6.28 -10.99 -0.07 10.37 16 16 O -0.54 -13.41 14.21 5.55 0.08 -13.33 16 17 C -0.14 -2.15 3.45 -27.88 -0.10 -2.25 16 18 C -0.07 -1.05 2.49 -88.96 -0.22 -1.27 16 19 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 20 C -0.11 -1.60 5.32 -25.61 -0.14 -1.74 16 21 C -0.12 -1.40 6.38 -25.55 -0.16 -1.57 16 22 C -0.10 -1.03 3.46 -88.91 -0.31 -1.34 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 C -0.14 -1.23 9.15 37.16 0.34 -0.89 16 25 C -0.12 -1.28 5.76 -24.74 -0.14 -1.43 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.60 6.49 -51.93 -0.34 0.27 16 32 H 0.06 0.87 6.88 -51.93 -0.36 0.51 16 33 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 34 H 0.07 0.92 6.10 -51.93 -0.32 0.60 16 35 H 0.03 0.78 7.94 -51.93 -0.41 0.36 16 36 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.13 7.37 -51.93 -0.38 0.74 16 39 H 0.09 1.20 4.70 -51.93 -0.24 0.96 16 40 H 0.07 1.27 7.51 -51.93 -0.39 0.88 16 41 H 0.06 0.83 7.77 -51.93 -0.40 0.43 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.63 7.80 -51.93 -0.41 0.23 16 44 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 47 H 0.07 0.68 7.98 -51.93 -0.41 0.26 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -31.76 367.32 -9.06 -40.82 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -9.07 Total: -0.78 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.92 Total: -10.20 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.34 Total: -39.06 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.76 -9.06 -40.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759171084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.436 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds