Wall clock time and date at job start Tue Mar 31 2020 05:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47227 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99856 * 2 1 3 5 5 N 1.46501 * 109.46986 * 64.99951 * 4 2 1 6 6 C 1.46504 * 119.99824 * 269.99781 * 5 4 2 7 7 C 1.50701 * 109.47339 * 270.00141 * 6 5 4 8 8 H 1.07998 * 119.99762 * 359.97438 * 7 6 5 9 9 C 1.37872 * 119.99989 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99982 * 180.02562 * 9 7 6 11 11 Si 1.86802 * 120.00109 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46686 * 90.00683 * 11 9 7 13 13 H 1.48502 * 109.46855 * 210.00000 * 11 9 7 14 14 H 1.48490 * 109.46906 * 330.00511 * 11 9 7 15 15 C 1.34775 * 120.00287 * 90.00174 * 5 4 2 16 16 O 1.21281 * 120.00299 * 180.02562 * 15 5 4 17 17 C 1.50700 * 119.99805 * 359.97438 * 15 5 4 18 18 C 1.53000 * 109.47118 * 180.02562 * 17 15 5 19 19 H 1.08999 * 110.67000 * 56.78142 * 18 17 15 20 20 C 1.54889 * 110.75569 * 293.54792 * 18 17 15 21 21 C 1.54266 * 104.19617 * 203.55793 * 20 18 17 22 22 C 1.53872 * 106.59933 * 23.61336 * 21 20 18 23 23 H 1.09001 * 110.03021 * 240.66868 * 22 21 20 24 24 C 1.52997 * 110.03598 * 119.28382 * 22 21 20 25 25 C 1.54265 * 106.63834 * 359.97173 * 22 21 20 26 26 H 1.09002 * 109.46835 * 300.00223 * 1 2 3 27 27 H 1.09001 * 109.46995 * 60.00192 * 1 2 3 28 28 H 1.08994 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46835 * 239.99776 * 2 1 3 30 30 H 1.08999 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46977 * 299.99819 * 3 2 1 32 32 H 1.08994 * 109.47410 * 59.99769 * 3 2 1 33 33 H 1.09001 * 109.47117 * 305.00193 * 4 2 1 34 34 H 1.08994 * 109.47259 * 184.99933 * 4 2 1 35 35 H 1.08999 * 109.47211 * 30.00453 * 6 5 4 36 36 H 1.09008 * 109.46993 * 150.00273 * 6 5 4 37 37 H 0.97002 * 120.00334 * 180.02562 * 10 9 7 38 38 H 1.08998 * 109.46751 * 60.00510 * 17 15 5 39 39 H 1.08999 * 109.47131 * 300.00549 * 17 15 5 40 40 H 1.09007 * 110.48667 * 84.88132 * 20 18 17 41 41 H 1.08997 * 110.48939 * 322.23845 * 20 18 17 42 42 H 1.09000 * 110.03514 * 264.32780 * 21 20 18 43 43 H 1.09003 * 110.02993 * 142.89745 * 21 20 18 44 44 H 1.09002 * 109.47153 * 62.09098 * 24 22 21 45 45 H 1.09001 * 109.46832 * 302.09289 * 24 22 21 46 46 H 1.09004 * 109.47261 * 182.09270 * 24 22 21 47 47 H 1.09008 * 110.48637 * 95.09593 * 25 22 21 48 48 H 1.09007 * 110.48937 * 217.73792 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.3745 -2.5658 1.7614 7 6 0.5715 -2.9407 3.2076 8 1 1.5508 -2.8645 3.6566 9 6 -0.4982 -3.3820 3.9573 10 7 -0.3263 -3.7087 5.2196 11 14 -2.1918 -3.5145 3.1804 12 1 -2.3630 -4.8683 2.5946 13 1 -3.2309 -3.2888 4.2171 14 1 -2.3277 -2.4921 2.1123 15 6 2.4714 -3.0331 0.6117 16 8 2.1503 -4.2016 0.5627 17 6 3.7857 -2.5876 0.0242 18 6 4.5161 -3.7955 -0.5660 19 1 3.8956 -4.2943 -1.3104 20 6 4.9346 -4.7835 0.5510 21 6 6.1176 -5.5641 -0.0581 22 6 6.7160 -4.6686 -1.1570 23 1 6.6537 -5.1704 -2.1226 24 6 8.1743 -4.3412 -0.8300 25 6 5.8760 -3.3749 -1.1786 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4425 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6444 1.2952 35 1 -0.3485 -1.7531 1.6919 36 1 0.0041 -3.4297 1.2093 37 1 -1.0788 -4.0195 5.7470 38 1 4.3989 -2.1377 0.8051 39 1 3.6026 -1.8545 -0.7615 40 1 4.1136 -5.4598 0.7894 41 1 5.2535 -4.2406 1.4407 42 1 5.7642 -6.5002 -0.4906 43 1 6.8662 -5.7655 0.7082 44 1 8.7567 -5.2623 -0.8050 45 1 8.2275 -3.8512 0.1422 46 1 8.5778 -3.6769 -1.5943 47 1 6.3469 -2.6040 -0.5686 48 1 5.7420 -3.0240 -2.2020 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759171085.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:44 Heat of formation + Delta-G solvation = -73.710088 kcal Electronic energy + Delta-G solvation = -23423.161882 eV Core-core repulsion = 20283.557369 eV Total energy + Delta-G solvation = -3139.604513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.61065 -38.12217 -36.34275 -33.60524 -32.49835 -32.15732 -29.62370 -28.54361 -26.94645 -26.83309 -25.46122 -24.12142 -22.11377 -20.29009 -19.88742 -19.61299 -18.11457 -16.93156 -16.35535 -15.92484 -15.55307 -14.83202 -14.45039 -14.22104 -13.97916 -13.77389 -13.53298 -13.20662 -12.88663 -12.79017 -12.52880 -12.21989 -12.17342 -12.09123 -11.81802 -11.66798 -11.48004 -11.09714 -10.95913 -10.88799 -10.72810 -10.68137 -10.60312 -10.50536 -10.45027 -10.30363 -10.26844 -10.19861 -10.05446 -9.48656 -8.83318 -8.55286 -7.61275 -6.05763 -4.03508 3.30322 3.36247 3.38222 3.45705 3.88848 4.41891 4.66051 4.69823 4.78003 5.00323 5.08613 5.14099 5.24604 5.27690 5.36061 5.39468 5.52767 5.54746 5.62905 5.64459 5.69659 5.74593 5.78314 5.81280 5.85071 5.90729 5.99649 6.02929 6.03698 6.10242 6.13065 6.15528 6.20950 6.23417 6.28443 6.47918 6.49357 6.55199 6.65483 6.73673 6.80699 7.00243 7.43660 7.66401 8.35206 8.51589 8.97557 9.09458 9.55337 11.07830 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.005178 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.349352 B = 5405.962920 C = 6736.704713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.593 5.593 6 C 0.213 3.787 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.507 3.493 16 O -0.539 6.539 17 C -0.132 4.132 18 C -0.074 4.074 19 H 0.079 0.921 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.097 4.097 23 H 0.067 0.933 24 C -0.143 4.143 25 C -0.116 4.116 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.066 0.934 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.438 6.632 -13.581 18.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.323 5.323 6 C 0.092 3.908 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.294 3.706 16 O -0.416 6.416 17 C -0.172 4.172 18 C -0.092 4.092 19 H 0.098 0.902 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.116 4.116 23 H 0.085 0.915 24 C -0.201 4.201 25 C -0.153 4.153 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.152 5.936 -13.422 18.432 hybrid contribution -0.939 -0.011 -0.133 0.949 sum 10.212 5.925 -13.555 17.976 Atomic orbital electron populations 1.21941 0.95003 1.02664 1.01106 1.21597 0.96806 0.95971 0.99039 1.21775 1.00675 0.95886 1.01783 1.21544 0.99390 0.82071 0.97818 1.47895 1.21175 1.06592 1.56680 1.19733 0.80890 0.95601 0.94547 1.21355 0.97327 1.44222 0.93448 0.90867 1.24848 0.98790 0.94684 0.94693 1.69901 1.31563 1.44982 1.07341 0.86883 0.84440 0.79295 0.79288 1.19977 1.21134 1.19044 1.20399 0.85571 0.85987 0.78609 1.90639 1.75085 1.17418 1.58501 1.21738 0.95308 0.99188 1.00983 1.21846 0.94776 0.94852 0.97770 0.90242 1.22401 0.97570 0.98261 0.97173 1.22242 0.97791 0.98369 0.97492 1.21726 0.94720 0.96207 0.98907 0.91484 1.21882 0.95810 1.01027 1.01345 1.22530 0.95350 0.97071 1.00374 0.92481 0.93473 0.91717 0.91480 0.92786 0.92867 0.92442 0.89911 0.91373 0.94773 0.94891 0.92654 0.89567 0.89830 0.90056 0.92207 0.92189 0.92110 0.93013 0.92605 0.93058 0.91551 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.18 37.16 0.30 -1.82 16 2 C -0.11 -1.48 3.12 -90.62 -0.28 -1.77 16 3 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 4 C 0.12 1.82 4.70 -4.04 -0.02 1.80 16 5 N -0.59 -11.97 2.28 -175.05 -0.40 -12.37 16 6 C 0.21 5.17 3.30 -5.19 -0.02 5.15 16 7 C -0.52 -15.11 9.94 -34.44 -0.34 -15.45 16 8 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 11 Si 0.87 21.74 27.47 -169.99 -4.67 17.07 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 15 C 0.51 10.14 7.46 -10.99 -0.08 10.06 16 16 O -0.54 -12.98 14.10 5.56 0.08 -12.90 16 17 C -0.13 -1.91 3.78 -27.88 -0.11 -2.02 16 18 C -0.07 -1.03 2.48 -88.59 -0.22 -1.25 16 19 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 20 C -0.12 -1.77 5.59 -25.07 -0.14 -1.91 16 21 C -0.12 -1.49 6.46 -25.61 -0.17 -1.66 16 22 C -0.10 -1.03 3.50 -89.50 -0.31 -1.34 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 C -0.14 -1.30 8.84 37.16 0.33 -0.97 16 25 C -0.12 -1.26 5.82 -25.03 -0.15 -1.40 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.08 5.89 -51.93 -0.31 0.77 16 29 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.07 0.92 6.44 -51.93 -0.33 0.58 16 35 H 0.03 0.79 5.04 -51.93 -0.26 0.53 16 36 H 0.03 0.87 6.85 -51.92 -0.36 0.51 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.09 1.16 7.36 -51.93 -0.38 0.78 16 39 H 0.08 1.02 7.26 -51.93 -0.38 0.65 16 40 H 0.08 1.49 7.05 -51.93 -0.37 1.13 16 41 H 0.06 0.92 8.02 -51.93 -0.42 0.51 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.70 7.67 -51.93 -0.40 0.30 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.68 7.77 -51.92 -0.40 0.28 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -32.51 365.08 -8.73 -41.24 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -9.06 Total: 0.29 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.96 Total: -11.68 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.37 Total: -39.51 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.51 -8.73 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759171085.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.472 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds