Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47202 * 2 1 4 4 C 1.53006 * 109.46915 * 119.99703 * 2 1 3 5 5 N 1.46501 * 109.47130 * 65.00061 * 4 2 1 6 6 C 1.46496 * 119.99852 * 270.00358 * 5 4 2 7 7 C 1.50702 * 109.46920 * 269.99626 * 6 5 4 8 8 H 1.08010 * 119.99768 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00133 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99962 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47350 * 89.99907 * 11 9 7 13 13 H 1.48499 * 109.47314 * 209.99807 * 11 9 7 14 14 H 1.48499 * 109.47264 * 329.99955 * 11 9 7 15 15 C 1.34777 * 119.99566 * 89.99753 * 5 4 2 16 16 O 1.21283 * 119.99659 * 180.02562 * 15 5 4 17 17 C 1.50701 * 120.00134 * 0.02562 * 15 5 4 18 18 C 1.53005 * 109.46602 * 179.97438 * 17 15 5 19 19 H 1.08997 * 110.43669 * 52.46139 * 18 17 15 20 20 C 1.54891 * 110.48565 * 289.77182 * 18 17 15 21 21 C 1.54899 * 102.74611 * 203.38121 * 20 18 17 22 22 C 1.54266 * 104.19319 * 37.94376 * 21 20 18 23 23 H 1.09009 * 110.02965 * 95.67370 * 22 21 20 24 24 C 1.52994 * 110.03283 * 217.10138 * 22 21 20 25 25 C 1.53869 * 106.60080 * 336.39001 * 22 21 20 26 26 H 1.08999 * 109.46934 * 300.00428 * 1 2 3 27 27 H 1.08997 * 109.46751 * 60.00230 * 1 2 3 28 28 H 1.09003 * 109.46988 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47614 * 239.99852 * 2 1 3 30 30 H 1.08995 * 109.47374 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46821 * 300.00036 * 3 2 1 32 32 H 1.09004 * 109.47126 * 59.99725 * 3 2 1 33 33 H 1.09005 * 109.46766 * 305.00095 * 4 2 1 34 34 H 1.08997 * 109.46839 * 185.00405 * 4 2 1 35 35 H 1.08990 * 109.47445 * 29.99375 * 6 5 4 36 36 H 1.09005 * 109.46959 * 150.00220 * 6 5 4 37 37 H 0.97002 * 119.99580 * 180.02562 * 10 9 7 38 38 H 1.08995 * 109.47177 * 59.99848 * 17 15 5 39 39 H 1.08993 * 109.47059 * 299.99273 * 17 15 5 40 40 H 1.08997 * 110.75776 * 321.69758 * 20 18 17 41 41 H 1.08994 * 110.75338 * 85.07045 * 20 18 17 42 42 H 1.08998 * 110.47995 * 156.61949 * 21 20 18 43 43 H 1.08993 * 110.48304 * 279.13227 * 21 20 18 44 44 H 1.08999 * 109.47387 * 177.17218 * 24 22 21 45 45 H 1.09008 * 109.46956 * 297.17226 * 24 22 21 46 46 H 1.08996 * 109.47117 * 57.16750 * 24 22 21 47 47 H 1.09000 * 110.03397 * 240.71393 * 25 22 21 48 48 H 1.09001 * 110.03290 * 119.28917 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.3745 -2.5658 1.7613 7 6 0.5715 -2.9407 3.2076 8 1 1.5507 -2.8636 3.6569 9 6 -0.4982 -3.3820 3.9573 10 7 -1.6904 -3.4763 3.4100 11 14 -0.2541 -3.8459 5.7502 12 1 -0.4678 -2.6502 6.6045 13 1 -1.2280 -4.9024 6.1251 14 1 1.1274 -4.3540 5.9464 15 6 2.4715 -3.0330 0.6117 16 8 2.1505 -4.2015 0.5628 17 6 3.7863 -2.5875 0.0252 18 6 4.5172 -3.7957 -0.5641 19 1 3.8664 -4.3360 -1.2516 20 6 5.0147 -4.7319 0.5650 21 6 6.1826 -5.4922 -0.1113 22 6 6.8667 -4.4274 -0.9933 23 1 7.7115 -3.9889 -0.4619 24 6 7.3416 -5.0586 -2.3036 25 6 5.8078 -3.3488 -1.2812 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2953 35 1 -0.3484 -1.7531 1.6919 36 1 0.0042 -3.4297 1.2093 37 1 -2.4430 -3.7864 3.9376 38 1 4.3991 -2.1382 0.8066 39 1 3.6039 -1.8542 -0.7603 40 1 5.3722 -4.1536 1.4170 41 1 4.2283 -5.4229 0.8684 42 1 6.8773 -5.8696 0.6391 43 1 5.8019 -6.3100 -0.7230 44 1 7.7781 -4.2891 -2.9404 45 1 8.0909 -5.8208 -2.0891 46 1 6.4944 -5.5157 -2.8147 47 1 5.6322 -3.2749 -2.3545 48 1 6.1387 -2.3868 -0.8897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759171087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = -78.394763 kcal Electronic energy + Delta-G solvation = -23363.005491 eV Core-core repulsion = 20223.197835 eV Total energy + Delta-G solvation = -3139.807656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.52486 -38.08004 -36.23788 -33.54312 -32.45992 -32.12852 -29.58787 -28.10291 -26.81956 -26.61089 -25.33402 -24.14066 -22.38766 -20.26952 -20.15755 -19.29446 -18.20030 -16.51295 -16.27463 -15.79491 -15.11158 -14.89714 -14.50548 -14.46789 -13.88765 -13.71149 -13.33825 -13.17302 -12.94508 -12.73330 -12.39110 -12.27126 -12.04281 -11.95406 -11.59551 -11.41235 -11.32940 -10.97733 -10.89226 -10.89001 -10.67685 -10.63797 -10.61158 -10.53644 -10.41510 -10.32475 -10.21097 -10.16907 -10.05985 -9.53451 -8.72220 -8.38512 -7.53998 -6.00332 -4.04271 3.31625 3.38401 3.42416 3.56219 4.02273 4.47718 4.67389 4.72763 4.79177 5.07319 5.16167 5.21693 5.29883 5.33789 5.34949 5.42716 5.53974 5.58974 5.62202 5.68850 5.74161 5.79191 5.84435 5.88792 5.90933 5.94407 6.00040 6.05296 6.12662 6.15604 6.18364 6.22142 6.23539 6.27148 6.33870 6.48604 6.60174 6.62552 6.72359 6.73282 7.17791 7.50888 7.64475 7.97092 8.30064 8.53787 8.96142 9.21817 9.60693 11.07481 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.005217 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.655188 B = 5366.097273 C = 6921.303056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.243 3.757 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.504 3.496 16 O -0.541 6.541 17 C -0.134 4.134 18 C -0.073 4.073 19 H 0.080 0.920 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.097 4.097 23 H 0.067 0.933 24 C -0.144 4.144 25 C -0.117 4.117 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.132 5.794 -9.669 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.123 3.877 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.291 3.709 16 O -0.418 6.418 17 C -0.174 4.174 18 C -0.092 4.092 19 H 0.098 0.902 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.115 4.115 23 H 0.085 0.915 24 C -0.201 4.201 25 C -0.155 4.155 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.747 5.113 -9.640 17.552 hybrid contribution 0.023 -0.086 1.102 1.106 sum 13.770 5.027 -8.538 16.964 Atomic orbital electron populations 1.21924 0.94673 1.03061 1.00883 1.21588 0.97057 0.95736 0.98967 1.21780 1.00503 0.96094 1.01723 1.21511 0.98967 0.82557 0.97769 1.48211 1.21835 1.06258 1.56539 1.19359 0.78905 0.96243 0.93156 1.21464 0.94973 1.44139 0.95638 0.92633 1.24916 0.95096 0.95512 0.98566 1.69932 0.99811 1.47236 1.36492 0.86541 0.78030 0.78169 0.84939 1.20716 1.21140 1.19955 1.20374 0.85574 0.86124 0.78822 1.90642 1.75181 1.17480 1.58525 1.21804 0.95561 0.99108 1.00915 1.21706 0.95121 0.95122 0.97273 0.90179 1.22536 0.97379 0.98512 0.96961 1.22455 0.97420 0.97625 0.98340 1.21732 0.97726 0.96021 0.96064 0.91475 1.21887 1.00930 1.00282 0.97019 1.22316 0.94831 0.98167 1.00146 0.92559 0.93714 0.91266 0.91626 0.92950 0.92904 0.92533 0.90172 0.91781 0.94342 0.94193 0.92823 0.89791 0.89942 0.92136 0.90186 0.92227 0.91708 0.93044 0.93054 0.92585 0.91955 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.57 3.12 -90.61 -0.28 -1.85 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 4 C 0.12 1.89 4.70 -4.04 -0.02 1.87 16 5 N -0.60 -12.47 2.28 -175.06 -0.40 -12.87 16 6 C 0.24 6.28 4.23 -5.19 -0.02 6.26 16 7 C -0.52 -14.87 9.39 -34.44 -0.32 -15.20 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 11 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.50 10.37 7.49 -10.98 -0.08 10.29 16 16 O -0.54 -13.42 14.31 5.56 0.08 -13.34 16 17 C -0.13 -1.99 3.60 -27.88 -0.10 -2.09 16 18 C -0.07 -1.04 2.45 -88.96 -0.22 -1.26 16 19 H 0.08 1.28 7.90 -51.93 -0.41 0.87 16 20 C -0.12 -1.74 5.75 -24.73 -0.14 -1.88 16 21 C -0.12 -1.46 6.36 -25.07 -0.16 -1.62 16 22 C -0.10 -1.02 3.50 -89.51 -0.31 -1.33 16 23 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 24 C -0.14 -1.32 8.85 37.15 0.33 -0.99 16 25 C -0.12 -1.30 6.03 -25.62 -0.15 -1.45 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.27 5.89 -51.93 -0.31 0.97 16 29 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 35 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 36 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.14 7.28 -51.93 -0.38 0.77 16 39 H 0.08 1.06 7.26 -51.93 -0.38 0.69 16 40 H 0.06 0.89 7.96 -51.93 -0.41 0.48 16 41 H 0.08 1.44 7.29 -51.93 -0.38 1.06 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.78 7.84 -51.93 -0.41 0.38 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16 48 H 0.06 0.63 7.84 -51.93 -0.41 0.22 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -31.55 368.70 -9.06 -40.62 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -9.08 Total: -0.25 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.94 Total: -10.79 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.34 Total: -38.83 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.55 -9.06 -40.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759171087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.778 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds