Wall clock time and date at job start Tue Mar 31 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47139 * 2 1 4 4 C 1.53000 * 109.47220 * 120.00234 * 2 1 3 5 5 N 1.46506 * 109.47090 * 64.99630 * 4 2 1 6 6 C 1.46494 * 120.00265 * 270.00465 * 5 4 2 7 7 C 1.50706 * 109.46957 * 270.00078 * 6 5 4 8 8 H 1.08004 * 119.99852 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00167 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00266 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99927 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.47427 * 90.00301 * 11 9 7 13 13 H 1.48499 * 109.46983 * 210.00574 * 11 9 7 14 14 H 1.48504 * 109.47076 * 329.99867 * 11 9 7 15 15 C 1.34779 * 119.99732 * 90.00057 * 5 4 2 16 16 O 1.21276 * 119.99930 * 179.97438 * 15 5 4 17 17 C 1.50699 * 119.99830 * 0.02562 * 15 5 4 18 18 C 1.53007 * 109.47050 * 179.97438 * 17 15 5 19 19 H 1.09000 * 110.05387 * 53.58085 * 18 17 15 20 20 C 1.54381 * 110.04545 * 292.11169 * 18 17 15 21 21 C 1.54888 * 104.19278 * 217.09026 * 20 18 17 22 22 C 1.54887 * 102.75281 * 37.97113 * 21 20 18 23 23 C 1.53875 * 110.03147 * 175.00264 * 18 17 15 24 24 H 1.09001 * 110.02803 * 238.61607 * 23 18 17 25 25 C 1.52997 * 110.03401 * 359.97438 * 23 18 17 26 26 H 1.09004 * 109.47174 * 60.00257 * 1 2 3 27 27 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46988 * 299.99981 * 1 2 3 29 29 H 1.09002 * 109.46652 * 240.00075 * 2 1 3 30 30 H 1.09001 * 109.46946 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47261 * 300.00065 * 3 2 1 32 32 H 1.08999 * 109.46764 * 59.99919 * 3 2 1 33 33 H 1.09004 * 109.46767 * 305.00269 * 4 2 1 34 34 H 1.08992 * 109.47374 * 184.99991 * 4 2 1 35 35 H 1.08997 * 109.47366 * 29.99657 * 6 5 4 36 36 H 1.09002 * 109.47646 * 150.00293 * 6 5 4 37 37 H 0.97001 * 120.00178 * 180.02562 * 10 9 7 38 38 H 1.09006 * 109.47478 * 60.00355 * 17 15 5 39 39 H 1.08999 * 109.47662 * 299.99826 * 17 15 5 40 40 H 1.09002 * 110.45844 * 98.42213 * 20 18 17 41 41 H 1.08992 * 110.50962 * 335.77930 * 20 18 17 42 42 H 1.09005 * 110.75544 * 279.65064 * 21 20 18 43 43 H 1.08996 * 110.91041 * 156.36136 * 21 20 18 44 44 H 1.08997 * 110.48362 * 203.38169 * 22 21 20 45 45 H 1.08996 * 110.48481 * 80.73424 * 22 21 20 46 46 H 1.09002 * 109.47153 * 179.31108 * 25 23 18 47 47 H 1.09001 * 109.46832 * 59.31299 * 25 23 18 48 48 H 1.09004 * 109.47261 * 299.31280 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.3746 -2.5660 1.7611 7 6 0.5716 -2.9409 3.2074 8 1 1.5509 -2.8646 3.6565 9 6 -0.4981 -3.3823 3.9571 10 7 -0.3262 -3.7090 5.2194 11 14 -2.1917 -3.5149 3.1803 12 1 -2.3629 -4.8686 2.5943 13 1 -3.2308 -3.2891 4.2169 14 1 -2.3278 -2.4922 2.1121 15 6 2.4715 -3.0331 0.6114 16 8 2.1508 -4.2017 0.5632 17 6 3.7862 -2.5877 0.0249 18 6 4.5171 -3.7957 -0.5646 19 1 3.8678 -4.3198 -1.2658 20 6 4.9572 -4.7511 0.5655 21 6 6.3369 -5.2794 0.1004 22 6 6.9771 -4.0314 -0.5566 23 6 5.8021 -3.3383 -1.2769 24 1 5.7759 -3.6397 -2.3240 25 6 5.9462 -1.8186 -1.1732 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 1.6054 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2951 35 1 -0.3484 -1.7532 1.6918 36 1 0.0042 -3.4299 1.2091 37 1 -1.0787 -4.0199 5.7467 38 1 4.3992 -2.1384 0.8064 39 1 3.6039 -1.8542 -0.7605 40 1 4.2484 -5.5729 0.6672 41 1 5.0534 -4.2103 1.5069 42 1 6.2178 -6.0814 -0.6282 43 1 6.9309 -5.6164 0.9498 44 1 7.7424 -4.3282 -1.2738 45 1 7.3995 -3.3744 0.2036 46 1 6.8648 -1.5061 -1.6698 47 1 5.9837 -1.5280 -0.1233 48 1 5.0927 -1.3391 -1.6527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769372263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:53 Heat of formation + Delta-G solvation = -67.664566 kcal Electronic energy + Delta-G solvation = -23813.282016 eV Core-core repulsion = 20673.939656 eV Total energy + Delta-G solvation = -3139.342360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.79712 -38.16706 -36.32107 -33.56776 -32.32657 -31.70788 -30.70247 -28.46773 -26.94695 -25.93090 -25.22516 -24.78500 -22.12059 -20.63640 -20.28112 -18.83731 -17.96626 -16.94208 -16.68310 -15.77530 -15.30269 -14.88603 -14.59951 -14.40230 -13.94975 -13.72117 -13.58281 -13.26817 -12.96160 -12.67945 -12.42144 -12.23418 -12.16259 -12.00801 -11.78835 -11.68256 -11.48111 -11.12178 -10.95678 -10.81197 -10.69823 -10.63190 -10.59932 -10.54626 -10.45805 -10.31697 -10.27362 -10.09993 -10.02885 -9.48389 -8.82458 -8.55171 -7.60541 -6.05654 -4.03307 3.30337 3.36225 3.38242 3.46924 3.90782 4.41974 4.66308 4.68860 4.78905 5.00210 5.08583 5.14276 5.27111 5.32624 5.37675 5.39638 5.45940 5.53577 5.60217 5.63602 5.70526 5.75381 5.80887 5.81992 5.88215 5.95045 6.00639 6.03369 6.05393 6.10266 6.12620 6.14076 6.23298 6.26629 6.28892 6.47027 6.49934 6.55118 6.63663 6.70641 6.81123 7.00657 7.44356 7.66658 8.36161 8.51851 8.97711 9.10540 9.55520 11.07954 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.005784 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.853329 B = 4839.615971 C = 6172.196837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.593 5.593 6 C 0.213 3.787 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.505 3.495 16 O -0.540 6.540 17 C -0.134 4.134 18 C -0.070 4.070 19 H 0.076 0.924 20 C -0.112 4.112 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.094 4.094 24 H 0.068 0.932 25 C -0.148 4.148 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.063 7.500 -13.519 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.324 5.324 6 C 0.092 3.908 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.292 3.708 16 O -0.417 6.417 17 C -0.174 4.174 18 C -0.089 4.089 19 H 0.095 0.905 20 C -0.149 4.149 21 C -0.165 4.165 22 C -0.156 4.156 23 C -0.112 4.112 24 H 0.087 0.913 25 C -0.205 4.205 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.765 6.812 -13.363 18.463 hybrid contribution -0.977 -0.008 -0.137 0.987 sum 9.788 6.804 -13.500 18.010 Atomic orbital electron populations 1.21942 0.95011 1.02663 1.01104 1.21593 0.96800 0.95958 0.99030 1.21776 1.00675 0.95890 1.01785 1.21537 0.99357 0.82096 0.97800 1.47891 1.21182 1.06587 1.56704 1.19727 0.80927 0.95588 0.94545 1.21357 0.97313 1.44199 0.93451 0.90882 1.24849 0.98787 0.94693 0.94694 1.69900 1.31557 1.44995 1.07344 0.86885 0.84447 0.79290 0.79286 1.19982 1.21133 1.19054 1.20506 0.85704 0.85993 0.78608 1.90642 1.75178 1.17446 1.58462 1.22006 0.94946 0.99385 1.01050 1.21550 0.95056 0.94955 0.97366 0.90536 1.22382 0.95683 0.99359 0.97515 1.22515 0.96896 0.97211 0.99862 1.22438 0.96969 0.97082 0.99149 1.21803 0.94787 0.95347 0.99305 0.91343 1.22004 1.01069 0.95467 1.01945 0.93482 0.91720 0.92474 0.91513 0.92781 0.92868 0.92442 0.89936 0.91408 0.94790 0.94907 0.92658 0.89421 0.89501 0.90656 0.91955 0.91877 0.91942 0.92267 0.91687 0.93279 0.92224 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.18 37.16 0.30 -1.83 16 2 C -0.11 -1.48 3.12 -90.62 -0.28 -1.76 16 3 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 4 C 0.12 1.82 4.70 -4.04 -0.02 1.81 16 5 N -0.59 -12.00 2.28 -175.06 -0.40 -12.40 16 6 C 0.21 5.18 3.30 -5.19 -0.02 5.16 16 7 C -0.52 -15.13 9.94 -34.44 -0.34 -15.47 16 8 H 0.07 2.32 8.06 -52.48 -0.42 1.89 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 11 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 12 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 15 C 0.50 10.13 7.46 -10.99 -0.08 10.04 16 16 O -0.54 -13.07 14.41 5.56 0.08 -12.99 16 17 C -0.13 -1.94 2.43 -27.88 -0.07 -2.01 16 18 C -0.07 -0.98 2.55 -89.44 -0.23 -1.21 16 19 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 20 C -0.11 -1.69 5.43 -25.01 -0.14 -1.83 16 21 C -0.13 -1.52 6.91 -24.74 -0.17 -1.69 16 22 C -0.12 -1.24 6.36 -25.07 -0.16 -1.40 16 23 C -0.09 -1.02 3.50 -89.50 -0.31 -1.33 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 C -0.15 -1.39 7.88 37.16 0.29 -1.10 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.08 5.89 -51.93 -0.31 0.78 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.85 7.30 -51.93 -0.38 0.47 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 34 H 0.07 0.91 6.44 -51.93 -0.33 0.58 16 35 H 0.03 0.79 5.04 -51.93 -0.26 0.53 16 36 H 0.03 0.87 6.85 -51.93 -0.36 0.51 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.09 1.19 6.15 -51.93 -0.32 0.87 16 39 H 0.09 1.07 5.56 -51.93 -0.29 0.78 16 40 H 0.07 1.33 7.66 -51.93 -0.40 0.93 16 41 H 0.06 1.00 7.76 -51.93 -0.40 0.60 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.57 6.82 -51.93 -0.35 0.22 16 48 H 0.06 0.52 6.66 -51.93 -0.35 0.18 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -32.65 359.07 -8.58 -41.23 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -8.80 Total: 0.53 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -0.98 Total: -11.72 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.37 Total: -39.58 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.65 -8.58 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769372263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.432 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds