Wall clock time and date at job start Tue Mar 31 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47208 * 2 1 4 4 C 1.52997 * 109.47015 * 120.00248 * 2 1 3 5 5 N 1.46500 * 109.46905 * 174.11756 * 4 2 1 6 6 C 1.46500 * 119.99955 * 276.68632 * 5 4 2 7 7 C 1.50696 * 109.47424 * 269.99776 * 6 5 4 8 8 H 1.08010 * 119.99801 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00610 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99596 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00588 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47243 * 89.99632 * 11 9 7 13 13 H 1.48496 * 109.47391 * 209.99913 * 11 9 7 14 14 H 1.48502 * 109.46878 * 330.00050 * 11 9 7 15 15 C 1.34777 * 119.99898 * 96.69108 * 5 4 2 16 16 O 1.21283 * 120.00105 * 185.39571 * 15 5 4 17 17 C 1.50701 * 119.99945 * 5.38592 * 15 5 4 18 18 C 1.53009 * 109.46879 * 174.58615 * 17 15 5 19 19 H 1.08991 * 110.43722 * 52.46129 * 18 17 15 20 20 C 1.54888 * 110.59588 * 289.84405 * 18 17 15 21 21 C 1.54892 * 102.74693 * 203.32795 * 20 18 17 22 22 C 1.54269 * 104.19676 * 37.94052 * 21 20 18 23 23 C 1.53878 * 106.59743 * 336.39096 * 22 21 20 24 24 H 1.09004 * 110.02752 * 119.28695 * 23 22 21 25 25 C 1.53000 * 110.07236 * 240.69149 * 23 22 21 26 26 H 1.09001 * 109.46582 * 300.00056 * 1 2 3 27 27 H 1.08992 * 109.47255 * 59.99868 * 1 2 3 28 28 H 1.09004 * 109.46999 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46582 * 239.99944 * 2 1 3 30 30 H 1.08999 * 109.46958 * 64.70792 * 3 2 1 31 31 H 1.08993 * 109.46933 * 184.70959 * 3 2 1 32 32 H 1.09006 * 109.47037 * 304.70817 * 3 2 1 33 33 H 1.08997 * 109.47613 * 54.11910 * 4 2 1 34 34 H 1.08997 * 109.47081 * 294.11948 * 4 2 1 35 35 H 1.08995 * 109.47215 * 30.00392 * 6 5 4 36 36 H 1.09006 * 109.46716 * 150.00045 * 6 5 4 37 37 H 0.96995 * 120.00232 * 180.02562 * 10 9 7 38 38 H 1.08997 * 109.46916 * 54.58993 * 17 15 5 39 39 H 1.08996 * 109.47318 * 294.58322 * 17 15 5 40 40 H 1.09003 * 110.75773 * 321.63484 * 20 18 17 41 41 H 1.08999 * 110.76308 * 85.01045 * 20 18 17 42 42 H 1.08996 * 110.48958 * 156.62412 * 21 20 18 43 43 H 1.09001 * 110.48353 * 279.13412 * 21 20 18 44 44 H 1.09003 * 110.02875 * 217.11212 * 22 21 20 45 45 H 1.08991 * 110.03105 * 95.67833 * 22 21 20 46 46 H 1.09004 * 109.46680 * 177.88343 * 25 23 22 47 47 H 1.08995 * 109.47472 * 297.88262 * 25 23 22 48 48 H 1.09002 * 109.46694 * 57.88686 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4982 -0.8451 1.1805 6 6 4.1052 -1.9446 0.4262 7 6 4.2998 -3.1303 1.3356 8 1 4.0015 -3.0708 2.3720 9 6 4.8596 -4.2909 0.8451 10 7 5.2242 -4.3629 -0.4165 11 14 5.1002 -5.7610 1.9721 12 1 3.8900 -6.6207 1.9295 13 1 6.2791 -6.5431 1.5208 14 1 5.3225 -5.2879 3.3621 15 6 4.2811 0.0525 1.8112 16 8 5.4854 0.0085 1.6747 17 6 3.6601 1.1109 2.6860 18 6 4.7641 1.9078 3.3841 19 1 5.4850 2.2783 2.6553 20 6 5.4717 1.0378 4.4525 21 6 6.0656 2.0954 5.4158 22 6 4.9872 3.1966 5.4800 23 6 4.1596 3.0773 4.1882 24 1 3.1182 2.8652 4.4302 25 6 4.2563 4.3735 3.3811 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.7473 1.9313 0.9292 31 1 3.1268 1.4436 -0.0844 32 1 1.6095 1.9801 -0.8449 33 1 1.5933 -1.7140 1.3034 34 1 1.7652 -0.1503 2.1360 35 1 3.4509 -2.2235 -0.3996 36 1 5.0707 -1.6259 0.0331 37 1 5.6177 -5.1795 -0.7618 38 1 3.0253 0.6369 3.4346 39 1 3.0595 1.7826 2.0728 40 1 4.7535 0.4029 4.9713 41 1 6.2628 0.4390 4.0011 42 1 6.2289 1.6632 6.4030 43 1 6.9979 2.4945 5.0162 44 1 5.4584 4.1781 5.5322 45 1 4.3474 3.0424 6.3489 46 1 3.6979 4.2650 2.4513 47 1 3.8381 5.1954 3.9622 48 1 5.3017 4.5835 3.1548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769372264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:56 Heat of formation + Delta-G solvation = -77.099424 kcal Electronic energy + Delta-G solvation = -23671.495517 eV Core-core repulsion = 20531.744031 eV Total energy + Delta-G solvation = -3139.751486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.62550 -38.05566 -36.18110 -33.64397 -32.24367 -31.31716 -31.07757 -27.75840 -27.05410 -26.11349 -25.33902 -24.30874 -22.38219 -20.40530 -20.13538 -19.35074 -18.09575 -16.41899 -16.34389 -15.67357 -15.04122 -14.98132 -14.63894 -14.36235 -14.01068 -13.71700 -13.43974 -13.22195 -12.95305 -12.70926 -12.45724 -12.23522 -12.13218 -11.84293 -11.67078 -11.46433 -11.33645 -10.99678 -10.88975 -10.82267 -10.71555 -10.67561 -10.62296 -10.50108 -10.42488 -10.30761 -10.25798 -10.12339 -10.07700 -9.56527 -8.72722 -8.40520 -7.54221 -6.01204 -4.05778 3.31098 3.37785 3.41590 3.55553 4.02564 4.46845 4.67889 4.74646 4.80807 5.09087 5.16197 5.18774 5.32698 5.36862 5.39086 5.44289 5.49811 5.54879 5.62288 5.66492 5.72289 5.74980 5.80425 5.88005 5.90704 5.93856 5.98941 6.01819 6.09983 6.10856 6.17365 6.22566 6.27098 6.28130 6.32077 6.47077 6.49738 6.59248 6.62634 6.74694 7.15164 7.51822 7.63503 7.96372 8.28434 8.53896 8.94969 9.21445 9.59556 11.06701 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.005726 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.759932 B = 4889.163423 C = 6418.654793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.116 3.884 5 N -0.599 5.599 6 C 0.246 3.754 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.509 3.491 16 O -0.543 6.543 17 C -0.143 4.143 18 C -0.069 4.069 19 H 0.082 0.918 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.095 4.095 24 H 0.069 0.931 25 C -0.143 4.143 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.747 15.026 6.922 18.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.204 4.204 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.127 3.873 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.296 3.704 16 O -0.421 6.421 17 C -0.183 4.183 18 C -0.088 4.088 19 H 0.101 0.899 20 C -0.155 4.155 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.113 4.113 24 H 0.088 0.912 25 C -0.201 4.201 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.013 14.859 6.704 17.746 hybrid contribution -0.007 -1.010 0.519 1.136 sum -7.021 13.849 7.223 17.125 Atomic orbital electron populations 1.21760 0.95122 1.01797 1.01304 1.21561 0.95321 0.96516 1.00237 1.21960 1.01510 0.96022 1.00936 1.21511 0.81969 1.00876 0.96477 1.48185 1.05146 1.28165 1.51478 1.19211 0.94419 0.82671 0.90982 1.21448 1.40882 0.97307 0.96680 0.92584 1.24925 0.95307 0.98702 0.95142 1.69936 1.42169 1.27788 1.13510 0.86530 0.77661 0.82422 0.81010 1.20680 1.21120 1.19934 1.20321 0.87243 0.82231 0.80614 1.90637 1.14614 1.73553 1.63305 1.22012 0.99287 0.97613 0.99386 1.21796 0.96285 0.93996 0.96736 0.89921 1.22540 1.00323 0.97040 0.95623 1.22346 0.98163 0.96328 0.99392 1.22202 0.97375 0.98857 0.97189 1.21825 0.99454 0.95058 0.95003 0.91239 1.21876 1.01769 0.96648 0.99758 0.92922 0.92892 0.92482 0.90506 0.92777 0.92472 0.93073 0.90453 0.91513 0.95288 0.93914 0.92794 0.89960 0.89096 0.92084 0.90345 0.92186 0.91883 0.92122 0.92267 0.92761 0.93126 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 2 C -0.12 -1.64 3.11 -90.62 -0.28 -1.92 16 3 C -0.15 -1.89 7.59 37.16 0.28 -1.61 16 4 C 0.12 1.89 4.89 -4.04 -0.02 1.87 16 5 N -0.60 -12.59 2.26 -175.07 -0.40 -12.98 16 6 C 0.25 6.48 5.22 -5.20 -0.03 6.45 16 7 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 11 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.51 10.47 6.23 -10.98 -0.07 10.40 16 16 O -0.54 -13.49 14.47 5.56 0.08 -13.41 16 17 C -0.14 -2.15 3.41 -27.88 -0.10 -2.25 16 18 C -0.07 -0.99 1.97 -88.96 -0.18 -1.17 16 19 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 20 C -0.12 -1.78 5.80 -24.74 -0.14 -1.93 16 21 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 22 C -0.12 -1.26 6.46 -25.61 -0.17 -1.42 16 23 C -0.09 -1.06 3.07 -89.50 -0.27 -1.33 16 24 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 25 C -0.14 -1.43 8.84 37.16 0.33 -1.10 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 30 H 0.05 0.60 6.49 -51.93 -0.34 0.27 16 31 H 0.06 0.87 6.87 -51.93 -0.36 0.51 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 34 H 0.07 0.92 6.09 -51.93 -0.32 0.60 16 35 H 0.03 0.78 7.94 -51.93 -0.41 0.36 16 36 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.08 1.15 7.24 -51.93 -0.38 0.77 16 39 H 0.09 1.19 4.80 -51.93 -0.25 0.94 16 40 H 0.06 0.92 7.97 -51.93 -0.41 0.50 16 41 H 0.08 1.42 7.46 -51.93 -0.39 1.04 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -31.71 367.26 -8.99 -40.70 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -9.04 Total: -0.24 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.89 Total: -10.53 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.34 Total: -39.06 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.71 -8.99 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769372264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.397 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds