Wall clock time and date at job start Tue Mar 31 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47238 * 2 1 4 4 C 1.52995 * 109.47002 * 119.99901 * 2 1 3 5 5 N 1.46504 * 109.47457 * 65.00189 * 4 2 1 6 6 C 1.46497 * 119.99761 * 270.00000 * 5 4 2 7 7 C 1.50700 * 109.47311 * 269.99791 * 6 5 4 8 8 H 1.08003 * 119.99578 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00309 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99760 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99969 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46688 * 90.00204 * 11 9 7 13 13 H 1.48498 * 109.46852 * 210.00116 * 11 9 7 14 14 H 1.48491 * 109.47210 * 330.00282 * 11 9 7 15 15 C 1.34769 * 120.00126 * 89.99595 * 5 4 2 16 16 O 1.21277 * 120.00209 * 180.02562 * 15 5 4 17 17 C 1.50707 * 120.00310 * 0.02562 * 15 5 4 18 18 C 1.52997 * 109.47458 * 180.02562 * 17 15 5 19 19 H 1.09001 * 110.66811 * 308.23292 * 18 17 15 20 20 C 1.54891 * 110.75763 * 71.66687 * 18 17 15 21 21 C 1.54267 * 104.19324 * 156.25900 * 20 18 17 22 22 C 1.53876 * 106.59870 * 336.39035 * 21 20 18 23 23 C 1.54261 * 106.59990 * 0.02562 * 22 21 20 24 24 H 1.09001 * 110.48691 * 264.79667 * 23 22 21 25 25 C 1.52994 * 110.48660 * 142.28682 * 23 22 21 26 26 H 1.08996 * 109.46967 * 60.00046 * 1 2 3 27 27 H 1.09004 * 109.47150 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46905 * 300.00251 * 1 2 3 29 29 H 1.08996 * 109.46817 * 239.99867 * 2 1 3 30 30 H 1.08996 * 109.47173 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46879 * 300.00052 * 3 2 1 32 32 H 1.08995 * 109.47002 * 59.99745 * 3 2 1 33 33 H 1.08995 * 109.47381 * 304.99723 * 4 2 1 34 34 H 1.09005 * 109.47089 * 185.00049 * 4 2 1 35 35 H 1.08995 * 109.47277 * 29.99544 * 6 5 4 36 36 H 1.09003 * 109.47218 * 149.99544 * 6 5 4 37 37 H 0.97003 * 119.99770 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.46966 * 59.99705 * 17 15 5 39 39 H 1.09005 * 109.46703 * 299.99952 * 17 15 5 40 40 H 1.09004 * 110.48613 * 37.58272 * 20 18 17 41 41 H 1.08994 * 110.48745 * 274.93690 * 20 18 17 42 42 H 1.08995 * 110.03032 * 217.10762 * 21 20 18 43 43 H 1.08998 * 110.03405 * 95.67701 * 21 20 18 44 44 H 1.08998 * 110.02768 * 119.28860 * 22 21 20 45 45 H 1.08994 * 110.03051 * 240.71540 * 22 21 20 46 46 H 1.08998 * 109.47490 * 61.45718 * 25 23 22 47 47 H 1.09004 * 109.47232 * 181.45445 * 25 23 22 48 48 H 1.09003 * 109.47416 * 301.45162 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 0.3746 -2.5659 1.7613 7 6 0.5716 -2.9407 3.2076 8 1 1.5509 -2.8644 3.6566 9 6 -0.4983 -3.3811 3.9576 10 7 -1.6906 -3.4744 3.4106 11 14 -0.2538 -3.8464 5.7502 12 1 -0.4655 -2.6508 6.6051 13 1 -1.2288 -4.9019 6.1249 14 1 1.1271 -4.3562 5.9454 15 6 2.4715 -3.0330 0.6117 16 8 2.1505 -4.2015 0.5627 17 6 3.7863 -2.5876 0.0250 18 6 4.5166 -3.7955 -0.5655 19 1 4.5807 -4.6014 0.1656 20 6 3.8195 -4.2788 -1.8615 21 6 4.9294 -5.0217 -2.6335 22 6 6.2691 -4.4590 -2.1272 23 6 5.9266 -3.3944 -1.0646 24 1 5.9060 -2.4010 -1.5128 25 6 6.9355 -3.4410 0.0846 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6054 -0.2617 2.1369 34 1 3.1263 -0.6443 1.2952 35 1 -0.3484 -1.7532 1.6919 36 1 0.0042 -3.4298 1.2093 37 1 -2.4433 -3.7846 3.9382 38 1 4.3992 -2.1383 0.8064 39 1 3.6037 -1.8542 -0.7605 40 1 3.4564 -3.4287 -2.4391 41 1 3.0004 -4.9574 -1.6237 42 1 4.8275 -4.8377 -3.7030 43 1 4.8732 -6.0912 -2.4312 44 1 6.8631 -5.2556 -1.6792 45 1 6.8174 -4.0021 -2.9509 46 1 7.9322 -3.2210 -0.2977 47 1 6.6635 -2.7008 0.8371 48 1 6.9295 -4.4343 0.5334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769372265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:58 Heat of formation + Delta-G solvation = -78.442047 kcal Electronic energy + Delta-G solvation = -23556.579861 eV Core-core repulsion = 20416.770155 eV Total energy + Delta-G solvation = -3139.809707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56277 -38.05675 -36.21920 -33.51420 -32.28853 -31.36008 -31.08863 -27.92451 -26.80555 -26.06919 -25.28377 -24.36445 -22.35939 -20.33359 -20.02768 -19.56136 -18.17441 -16.48951 -16.05642 -15.82284 -15.15195 -14.73629 -14.50413 -14.42600 -14.04209 -13.79906 -13.48883 -13.25545 -12.83185 -12.81370 -12.25243 -12.16848 -12.04126 -11.92174 -11.59983 -11.49870 -11.28184 -11.00959 -10.96502 -10.89009 -10.74701 -10.65104 -10.62631 -10.47659 -10.34852 -10.28101 -10.22905 -10.17586 -10.07155 -9.53033 -8.72549 -8.38544 -7.53926 -6.00355 -4.04338 3.31656 3.38388 3.42483 3.56497 4.01912 4.47841 4.63489 4.72968 4.79278 5.09532 5.18484 5.22426 5.33416 5.33489 5.37786 5.45868 5.49629 5.58350 5.63054 5.69020 5.70296 5.77899 5.85139 5.89054 5.91863 5.93717 5.98225 6.08852 6.12437 6.16290 6.19286 6.22220 6.24630 6.30426 6.33984 6.40985 6.59408 6.60881 6.71305 6.72757 7.17820 7.50935 7.64455 7.97072 8.30050 8.53889 8.96099 9.21932 9.60659 11.07449 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.005265 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.530994 B = 5317.072425 C = 6369.248069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.243 3.757 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.505 3.495 16 O -0.541 6.541 17 C -0.133 4.133 18 C -0.069 4.069 19 H 0.084 0.916 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.094 4.094 24 H 0.072 0.928 25 C -0.144 4.144 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.039 0.961 36 H 0.040 0.960 37 H 0.262 0.738 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.408 6.421 -10.362 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.329 5.329 6 C 0.123 3.877 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.291 3.709 16 O -0.418 6.418 17 C -0.173 4.173 18 C -0.088 4.088 19 H 0.102 0.898 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.113 4.113 24 H 0.090 0.910 25 C -0.202 4.202 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.022 5.733 -10.333 17.585 hybrid contribution 0.015 -0.111 1.092 1.098 sum 13.037 5.622 -9.240 16.940 Atomic orbital electron populations 1.21927 0.94680 1.03067 1.00882 1.21580 0.97048 0.95728 0.98959 1.21780 1.00505 0.96098 1.01722 1.21510 0.98968 0.82556 0.97773 1.48210 1.21849 1.06263 1.56536 1.19358 0.78908 0.96247 0.93146 1.21464 0.94951 1.44179 0.95645 0.92644 1.24917 0.95091 0.95507 0.98570 1.69932 0.99802 1.47239 1.36498 0.86538 0.78025 0.78176 0.84932 1.20705 1.21137 1.19964 1.20366 0.85629 0.86120 0.78744 1.90642 1.75208 1.17508 1.58486 1.21760 0.95446 0.99122 1.00982 1.21914 0.92691 0.96943 0.97249 0.89760 1.22383 0.97904 1.00019 0.95098 1.22124 0.94798 0.99990 0.99304 1.22186 0.97349 0.98147 0.97936 1.22027 0.94894 0.98823 0.95554 0.90995 1.21814 0.98252 1.02028 0.98062 0.93711 0.91259 0.92565 0.91637 0.92949 0.92912 0.92525 0.90171 0.91780 0.94339 0.94188 0.92821 0.89824 0.89884 0.92359 0.90457 0.92396 0.92079 0.91999 0.92359 0.93085 0.92636 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.18 37.16 0.30 -1.98 16 2 C -0.11 -1.57 3.12 -90.62 -0.28 -1.85 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 4 C 0.12 1.89 4.70 -4.04 -0.02 1.87 16 5 N -0.60 -12.48 2.28 -175.06 -0.40 -12.88 16 6 C 0.24 6.29 4.23 -5.19 -0.02 6.26 16 7 C -0.52 -14.91 9.39 -34.44 -0.32 -15.23 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 11 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.50 10.38 7.51 -10.99 -0.08 10.30 16 16 O -0.54 -13.44 14.42 5.56 0.08 -13.36 16 17 C -0.13 -1.98 3.75 -27.88 -0.10 -2.09 16 18 C -0.07 -0.98 1.88 -88.64 -0.17 -1.15 16 19 H 0.08 1.39 7.79 -51.93 -0.40 0.99 16 20 C -0.12 -1.65 5.76 -25.07 -0.14 -1.79 16 21 C -0.12 -1.44 6.80 -25.61 -0.17 -1.62 16 22 C -0.12 -1.24 6.37 -25.61 -0.16 -1.40 16 23 C -0.09 -1.05 2.90 -88.98 -0.26 -1.31 16 24 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 25 C -0.14 -1.48 9.11 37.15 0.34 -1.15 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.28 5.89 -51.93 -0.31 0.97 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 34 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 35 H 0.04 1.00 5.98 -51.93 -0.31 0.69 16 36 H 0.04 1.19 7.42 -51.93 -0.39 0.80 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.13 7.15 -51.93 -0.37 0.76 16 39 H 0.08 1.08 7.11 -51.93 -0.37 0.71 16 40 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 41 H 0.08 1.30 7.38 -51.93 -0.38 0.92 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.63 7.84 -51.93 -0.41 0.22 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.05 0.57 7.89 -51.93 -0.41 0.16 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -31.61 368.98 -8.98 -40.59 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -9.08 Total: -0.30 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.85 Total: -10.68 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.34 Total: -38.86 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.61 -8.98 -40.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769372265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.849 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds