Wall clock time and date at job start Tue Mar 31 2020 06:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 113.99862 * 2 1 4 4 C 1.53005 * 109.47370 * 150.00115 * 3 2 1 5 5 C 1.52996 * 109.47245 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46975 * 299.99595 * 5 4 3 7 7 C 1.53006 * 109.47164 * 180.02562 * 6 5 4 8 8 N 1.46895 * 109.47374 * 175.00207 * 7 6 5 9 9 C 1.46847 * 110.99868 * 294.20796 * 8 7 6 10 10 C 1.53041 * 109.52316 * 174.15919 * 9 8 7 11 11 C 1.53115 * 109.27954 * 59.18194 * 10 9 8 12 12 C 1.53125 * 109.15866 * 302.34502 * 11 10 9 13 13 H 1.08997 * 109.49893 * 297.71614 * 12 11 10 14 14 C 1.50700 * 109.53399 * 177.61332 * 12 11 10 15 15 H 1.07994 * 119.99719 * 240.17341 * 14 12 11 16 16 C 1.37875 * 120.00060 * 60.18157 * 14 12 11 17 17 N 1.31517 * 120.00118 * 359.97438 * 16 14 12 18 18 Si 1.86799 * 120.00072 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47409 * 59.99723 * 18 16 14 20 20 H 1.48499 * 109.47131 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46810 * 299.99195 * 18 16 14 22 22 C 1.46839 * 111.00352 * 169.99757 * 8 7 6 23 23 C 1.52997 * 109.47232 * 60.00237 * 6 5 4 24 24 C 1.52996 * 109.47131 * 300.00126 * 23 6 5 25 25 H 1.09001 * 109.46839 * 300.00567 * 1 2 3 26 26 H 1.09000 * 109.46820 * 60.00542 * 1 2 3 27 27 H 1.08998 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47681 * 29.99362 * 3 2 1 29 29 H 1.09001 * 109.46962 * 59.99479 * 4 3 2 30 30 H 1.08996 * 109.46524 * 299.99642 * 4 3 2 31 31 H 1.09000 * 109.46870 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.47372 * 59.99967 * 5 4 3 33 33 H 1.09001 * 109.47375 * 300.00370 * 6 5 4 34 34 H 1.09007 * 109.46744 * 294.99886 * 7 6 5 35 35 H 1.08995 * 109.46794 * 55.00131 * 7 6 5 36 36 H 1.08994 * 109.46437 * 294.17382 * 9 8 7 37 37 H 1.09003 * 109.46181 * 54.14955 * 9 8 7 38 38 H 1.09003 * 109.50382 * 299.23500 * 10 9 8 39 39 H 1.09002 * 109.50435 * 179.12165 * 10 9 8 40 40 H 1.08995 * 109.52362 * 182.44049 * 11 10 9 41 41 H 1.09004 * 109.57386 * 62.27832 * 11 10 9 42 42 H 0.96993 * 120.00089 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.46395 * 305.85706 * 22 8 7 44 44 H 1.09007 * 109.46169 * 65.82222 * 22 8 7 45 45 H 1.09001 * 109.47289 * 60.00075 * 23 6 5 46 46 H 1.09004 * 109.47261 * 179.97438 * 23 6 5 47 47 H 1.09001 * 109.46997 * 299.99574 * 24 23 6 48 48 H 1.08996 * 109.47134 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3590 1.2633 0.7212 5 6 3.9815 2.6609 0.7207 6 6 4.1890 3.1261 -0.7220 7 6 4.8122 4.5235 -0.7226 8 7 5.1217 4.9211 -2.1025 9 6 6.1692 4.0655 -2.6743 10 6 6.3623 4.4119 -4.1524 11 6 6.7560 5.8862 -4.2788 12 6 5.6717 6.7531 -3.6328 13 1 4.7302 6.6141 -4.1642 14 6 6.0786 8.2025 -3.7005 15 1 6.2015 8.7719 -2.7911 16 6 6.2938 8.8018 -4.9234 17 7 6.1444 8.1084 -6.0309 18 14 6.7974 10.5987 -5.0073 19 1 8.0809 10.7873 -4.2846 20 1 6.9659 10.9997 -6.4271 21 1 5.7464 11.4373 -4.3769 22 6 5.4985 6.3387 -2.1698 23 6 2.8404 3.1683 -1.4433 24 6 2.2178 1.7707 -1.4427 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.3450 1.9994 0.5137 29 1 4.0242 0.5694 0.2074 30 1 3.2111 0.9315 1.7489 31 1 4.9421 2.6309 1.2349 32 1 3.3164 3.3552 1.2342 33 1 4.8541 2.4318 -1.2356 34 1 4.1095 5.2349 -0.2885 35 1 5.7290 4.5127 -0.1333 36 1 7.1040 4.2283 -2.1380 37 1 5.8749 3.0200 -2.5818 38 1 5.4317 4.2361 -4.6920 39 1 7.1508 3.7874 -4.5726 40 1 6.8524 6.1484 -5.3324 41 1 7.7067 6.0550 -3.7730 42 1 6.2961 8.5299 -6.8912 43 1 4.7171 6.9445 -1.7108 44 1 6.4366 6.4909 -1.6358 45 1 2.1753 3.8626 -0.9298 46 1 2.9882 3.5002 -2.4710 47 1 2.8829 1.0765 -1.9562 48 1 1.2573 1.8007 -1.9569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895312917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:13 Heat of formation + Delta-G solvation = -76.517104 kcal Electronic energy + Delta-G solvation = -23162.898042 eV Core-core repulsion = 20023.171807 eV Total energy + Delta-G solvation = -3139.726235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.56838 -38.19983 -36.52322 -33.70223 -31.94430 -30.80447 -30.18976 -29.55210 -26.85352 -24.95738 -24.85538 -22.75907 -22.12045 -21.62248 -20.54457 -19.55845 -18.53841 -16.72980 -16.35452 -15.90763 -15.28383 -15.08912 -14.63176 -14.42420 -14.26506 -13.76615 -13.54704 -13.26675 -13.15759 -12.70456 -12.50914 -12.44101 -12.16571 -11.94197 -11.79178 -11.66920 -11.32987 -11.11999 -10.91939 -10.81709 -10.73127 -10.67074 -10.44527 -10.39690 -10.24795 -9.96209 -9.79399 -9.49775 -9.42225 -8.95696 -8.67720 -8.27365 -7.58398 -5.95044 -4.01197 3.33267 3.38013 3.40342 3.58415 4.38034 4.52934 4.63667 4.78454 4.90828 5.01304 5.12347 5.19303 5.26670 5.28494 5.34811 5.44411 5.45660 5.48767 5.54267 5.66324 5.75124 5.83072 5.87937 5.95323 5.99688 6.06428 6.08716 6.13573 6.15416 6.28182 6.34357 6.45747 6.55160 6.56608 6.60725 6.76513 6.79620 7.01324 7.07444 7.26133 7.44586 7.72718 7.78378 7.88792 8.12149 8.20834 8.51408 9.02864 9.62884 11.10884 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033620 B = 0.003232 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.645909 B = 8660.990502 C = 8693.041510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.089 3.911 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.085 4.085 7 C 0.059 3.941 8 N -0.535 5.535 9 C 0.061 3.939 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.515 4.515 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.068 3.932 23 C -0.102 4.102 24 C -0.140 4.140 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.260 0.740 43 H 0.057 0.943 44 H 0.017 0.983 45 H 0.056 0.944 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -13.950 11.683 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C 0.031 3.969 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.104 4.104 7 C -0.069 4.069 8 N -0.259 5.259 9 C -0.067 4.067 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.037 3.963 13 H 0.052 0.948 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.059 4.059 23 C -0.140 4.140 24 C -0.178 4.178 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.108 0.892 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.087 0.913 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.583 -14.145 11.200 19.571 hybrid contribution 0.830 1.340 0.410 1.629 sum -6.753 -12.804 11.610 18.556 Atomic orbital electron populations 1.22750 0.81458 1.02399 0.99897 1.87890 1.19352 1.28495 1.95138 1.22227 0.94729 0.83821 0.96100 1.21550 0.95359 0.97828 1.00252 1.21542 1.00687 0.95551 0.97174 1.21224 0.97425 0.96794 0.94928 1.22099 0.98487 0.95899 0.90420 1.61968 1.42261 1.04648 1.17067 1.22066 0.92022 0.96059 0.96522 1.21669 1.00341 0.99347 0.94117 1.21647 0.98096 0.90855 1.04260 1.18644 0.95484 0.93529 0.88618 0.94825 1.21124 1.46547 0.95500 0.92224 0.92975 1.24930 0.95427 0.97667 0.95796 1.69882 1.49549 1.35911 0.97394 0.86701 0.79051 0.85604 0.76861 1.20420 1.21328 1.20324 1.22292 0.97164 0.85365 1.01047 1.21422 0.95193 0.94789 1.02579 1.22053 1.01237 0.98158 0.96305 0.94276 0.94044 0.89937 0.92391 0.91209 0.91718 0.91600 0.91891 0.90964 0.91333 0.95750 0.96168 0.92210 0.92162 0.93713 0.89221 0.95276 0.93033 0.92444 0.96515 0.92475 0.89787 0.91335 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.39 -4.43 10.35 -35.23 -0.36 -4.79 16 3 C 0.09 0.94 2.61 -26.73 -0.07 0.87 16 4 C -0.11 -1.13 5.57 -26.73 -0.15 -1.28 16 5 C -0.11 -1.14 5.20 -26.73 -0.14 -1.28 16 6 C -0.08 -1.04 2.11 -90.62 -0.19 -1.23 16 7 C 0.06 0.87 4.35 -3.82 -0.02 0.85 16 8 N -0.54 -9.64 4.11 -234.67 -0.96 -10.61 16 9 C 0.06 1.07 5.30 -3.83 -0.02 1.05 16 10 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 11 C -0.11 -2.63 5.03 -26.61 -0.13 -2.77 16 12 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 13 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 15 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 17 N -0.89 -25.45 11.36 55.43 0.63 -24.82 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.07 1.45 4.68 -3.84 -0.02 1.43 16 23 C -0.10 -1.27 5.09 -26.73 -0.14 -1.41 16 24 C -0.14 -1.58 5.54 -26.73 -0.15 -1.72 16 25 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 26 H 0.04 0.33 7.87 -51.93 -0.41 -0.08 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.94 6.22 -51.93 -0.32 0.61 16 34 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 35 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.93 6.12 -51.93 -0.32 0.61 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 41 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.06 1.21 8.02 -51.93 -0.42 0.79 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -28.29 359.10 -10.29 -38.58 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -9.30 Total: -1.88 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -0.69 Total: -18.21 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.33 Total: -35.43 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.36 Total: -4.79 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.29 -10.29 -38.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895312917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.934 kcal (2) G-P(sol) polarization free energy of solvation -28.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds