Wall clock time and date at job start Tue Mar 31 2020 05:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.52211 * 2 1 4 4 C 1.53131 * 109.52807 * 120.13654 * 2 1 3 5 5 C 1.53034 * 109.27763 * 177.51523 * 4 2 1 6 6 N 1.46848 * 109.55325 * 300.84281 * 5 4 2 7 7 C 1.46895 * 110.99725 * 185.82112 * 6 5 4 8 8 C 1.53000 * 109.47154 * 169.82118 * 7 6 5 9 9 H 1.09004 * 109.47102 * 59.65595 * 8 7 6 10 10 O 1.42894 * 109.47122 * 299.65462 * 8 7 6 11 11 C 1.50707 * 109.47311 * 179.65342 * 8 7 6 12 12 H 1.08002 * 119.99411 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00266 * 179.97438 * 11 8 7 14 14 N 1.31505 * 120.00225 * 180.02562 * 13 11 8 15 15 Si 1.86802 * 119.99684 * 0.02562 * 13 11 8 16 16 H 1.48503 * 109.47233 * 90.00144 * 15 13 11 17 17 H 1.48498 * 109.46965 * 209.99758 * 15 13 11 18 18 H 1.48497 * 109.47659 * 330.00048 * 15 13 11 19 19 C 1.46861 * 111.18601 * 61.73112 * 6 5 4 20 20 C 1.53017 * 109.49093 * 298.27479 * 19 6 5 21 21 C 1.52975 * 109.48576 * 299.30230 * 20 19 6 22 22 C 1.53008 * 109.45427 * 299.91150 * 21 20 19 23 23 C 1.52996 * 109.46289 * 300.02380 * 22 21 20 24 24 C 1.52995 * 109.49591 * 59.99249 * 23 22 21 25 25 C 1.52958 * 109.51589 * 179.20378 * 20 19 6 26 26 H 1.08993 * 109.47214 * 299.85957 * 1 2 3 27 27 H 1.09001 * 109.47446 * 59.86788 * 1 2 3 28 28 H 1.08999 * 109.47127 * 179.86429 * 1 2 3 29 29 H 1.08998 * 109.50439 * 57.57178 * 4 2 1 30 30 H 1.08996 * 109.50250 * 297.45683 * 4 2 1 31 31 H 1.08998 * 109.45344 * 180.81983 * 5 4 2 32 32 H 1.09000 * 109.45815 * 60.86875 * 5 4 2 33 33 H 1.09002 * 109.47152 * 289.82027 * 7 6 5 34 34 H 1.08998 * 109.47602 * 49.81681 * 7 6 5 35 35 H 0.96696 * 114.00061 * 300.00132 * 10 8 7 36 36 H 0.96997 * 120.00428 * 180.02562 * 14 13 11 37 37 H 1.09007 * 109.46375 * 58.27935 * 19 6 5 38 38 H 1.08999 * 109.46556 * 178.26160 * 19 6 5 39 39 H 1.08999 * 109.47621 * 59.90780 * 21 20 19 40 40 H 1.09000 * 109.47627 * 179.91833 * 21 20 19 41 41 H 1.09001 * 109.47401 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47684 * 60.02068 * 22 21 20 43 43 H 1.09007 * 109.46442 * 299.99206 * 23 22 21 44 44 H 1.08999 * 109.47190 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47367 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.46717 * 60.01874 * 24 23 22 47 47 H 1.08996 * 109.47270 * 180.08408 * 25 20 19 48 48 H 1.09006 * 109.47547 * 300.09505 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0419 -0.7246 1.2481 5 6 3.5709 -0.7756 1.2113 6 7 4.0101 -1.4798 -0.0001 7 6 5.4669 -1.6688 -0.0002 8 6 5.8581 -2.6169 -1.1355 9 1 5.5416 -2.1928 -2.0885 10 8 5.2206 -3.8810 -0.9414 11 6 7.3535 -2.8041 -1.1409 12 1 7.9638 -2.2970 -0.4081 13 6 7.9425 -3.6225 -2.0812 14 7 9.2473 -3.7862 -2.0856 15 14 6.8869 -4.4989 -3.3490 16 1 6.7412 -3.6394 -4.5512 17 1 7.5338 -5.7796 -3.7316 18 1 5.5466 -4.7743 -2.7721 19 6 3.5706 -0.7761 -1.2119 20 6 2.0416 -0.7258 -1.2468 21 6 1.4846 -2.1503 -1.2720 22 6 1.9978 -2.8762 -2.5173 23 6 1.5395 -2.1264 -3.7697 24 6 2.0963 -0.7016 -3.7442 25 6 1.5835 0.0243 -2.4987 26 1 -0.3633 0.5116 0.8912 27 1 -0.3634 0.5159 -0.8888 28 1 -0.3633 -1.0276 -0.0024 29 1 1.6443 -1.7393 1.2686 30 1 1.7170 -0.1878 2.1394 31 1 3.9378 -1.3037 2.0914 32 1 3.9681 0.2394 1.2054 33 1 5.9581 -0.7065 -0.1450 34 1 5.7780 -2.0956 0.9532 35 1 5.4565 -4.3171 -0.1113 36 1 9.6617 -4.3617 -2.7474 37 1 3.9675 0.2391 -1.2065 38 1 3.9370 -1.3046 -2.0920 39 1 1.8115 -2.6842 -0.3797 40 1 0.3955 -2.1143 -1.2954 41 1 1.6008 -3.8912 -2.5358 42 1 3.0870 -2.9126 -2.4939 43 1 0.4502 -2.0902 -3.7931 44 1 1.9046 -2.6436 -4.6569 45 1 1.7692 -0.1675 -4.6363 46 1 3.1855 -0.7376 -3.7211 47 1 0.4944 0.0610 -2.5221 48 1 1.9811 1.0391 -2.4801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119817665.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:22 Heat of formation + Delta-G solvation = -71.156061 kcal Electronic energy + Delta-G solvation = -24896.582015 eV Core-core repulsion = 21757.088253 eV Total energy + Delta-G solvation = -3139.493762 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51784 -36.96878 -35.71820 -33.90177 -32.18758 -30.89881 -30.33493 -29.33389 -27.34259 -25.97374 -24.18150 -22.83067 -22.34556 -21.23189 -20.06403 -19.87605 -17.74221 -17.29067 -15.70628 -15.05078 -14.90697 -14.79959 -14.60355 -14.12362 -14.02412 -13.91798 -13.61242 -13.52545 -13.01717 -12.61393 -12.57004 -12.28606 -11.96730 -11.93133 -11.85461 -11.63493 -11.45422 -11.17655 -10.94923 -10.88974 -10.75826 -10.68780 -10.45206 -10.35849 -10.17020 -9.90850 -9.67651 -9.54927 -9.47349 -8.94674 -8.58496 -8.17250 -7.65250 -6.10013 -4.20720 3.41110 3.51045 3.78740 4.35827 4.56790 4.70361 4.80550 4.86090 5.07133 5.18083 5.25923 5.28672 5.40622 5.49109 5.51536 5.60037 5.63603 5.68933 5.72554 5.78282 5.82631 5.88585 5.93081 5.95313 5.98445 6.00895 6.08510 6.13649 6.16575 6.20110 6.23245 6.24797 6.33912 6.40538 6.45242 6.49485 6.58388 6.65042 6.68854 6.82997 6.93290 7.35515 7.48760 7.69650 7.77798 8.33214 8.87406 9.16890 9.55607 11.00840 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.006499 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.670107 B = 4307.107056 C = 5137.058092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 H 0.061 0.939 4 C -0.110 4.110 5 C 0.054 3.946 6 N -0.523 5.523 7 C 0.040 3.960 8 C 0.205 3.795 9 H 0.050 0.950 10 O -0.568 6.568 11 C -0.565 4.565 12 H 0.069 0.931 13 C 0.084 3.916 14 N -0.895 5.895 15 Si 0.868 3.132 16 H -0.289 1.289 17 H -0.297 1.297 18 H -0.212 1.212 19 C 0.063 3.937 20 C -0.045 4.045 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.107 4.107 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.353 0.647 36 H 0.264 0.736 37 H 0.020 0.980 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 6.828 2.424 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.079 0.921 4 C -0.148 4.148 5 C -0.074 4.074 6 N -0.247 5.247 7 C -0.087 4.087 8 C 0.147 3.853 9 H 0.067 0.933 10 O -0.373 6.373 11 C -0.603 4.603 12 H 0.088 0.912 13 C -0.120 4.120 14 N -0.533 5.533 15 Si 0.694 3.306 16 H -0.216 1.216 17 H -0.224 1.224 18 H -0.134 1.134 19 C -0.065 4.065 20 C -0.045 4.045 21 C -0.131 4.131 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.145 4.145 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.199 0.801 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.544 6.433 1.781 19.709 hybrid contribution 0.586 0.449 -0.175 0.758 sum -17.959 6.882 1.607 19.299 Atomic orbital electron populations 1.21912 0.95612 1.01932 1.01004 1.21171 0.95222 0.98710 0.94988 0.92056 1.21664 0.95264 1.01176 0.96693 1.22061 0.95199 0.96159 0.93996 1.61917 1.13860 1.48162 1.00780 1.22812 0.84848 0.99368 1.01693 1.19658 0.91649 0.81356 0.92668 0.93254 1.86646 1.72648 1.35254 1.42738 1.21548 0.90923 1.30446 1.17371 0.91240 1.24970 0.94698 0.95259 0.97079 1.69957 1.09943 1.37796 1.35562 0.87072 0.84431 0.78625 0.80426 1.21605 1.22398 1.13430 1.22240 0.93925 0.95795 0.94491 1.20508 0.94838 0.95785 0.93416 1.21474 0.98177 0.94391 0.99066 1.21573 1.02909 0.97816 0.93696 1.21535 0.99823 0.95689 0.98497 1.21581 1.01252 0.95973 0.97220 1.21601 1.00425 0.98278 0.94226 0.93341 0.92758 0.92236 0.90856 0.92394 0.91292 0.95953 0.95389 0.91399 0.80124 0.92666 0.96155 0.89528 0.90370 0.93312 0.92817 0.90099 0.92806 0.92623 0.92650 0.91613 0.91885 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.49 37.16 0.32 -1.13 16 2 C -0.08 -0.95 2.07 -90.51 -0.19 -1.14 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.31 5.02 -26.65 -0.13 -1.45 16 5 C 0.05 0.77 5.46 -3.83 -0.02 0.74 16 6 N -0.52 -8.68 3.81 -234.67 -0.89 -9.57 16 7 C 0.04 0.79 4.56 -3.83 -0.02 0.77 16 8 C 0.20 4.69 2.20 -27.88 -0.06 4.62 16 9 H 0.05 1.19 5.85 -51.93 -0.30 0.88 16 10 O -0.57 -12.63 10.01 -35.23 -0.35 -12.98 16 11 C -0.57 -15.61 9.34 -34.44 -0.32 -15.93 16 12 H 0.07 2.08 7.99 -52.49 -0.42 1.66 16 13 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 14 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 15 Si 0.87 21.85 26.99 -169.99 -4.59 17.26 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 18 H -0.21 -5.17 5.31 56.52 0.30 -4.87 16 19 C 0.06 1.01 3.32 -3.84 -0.01 0.99 16 20 C -0.05 -0.58 0.29 -154.50 -0.04 -0.63 16 21 C -0.09 -1.26 3.87 -26.74 -0.10 -1.36 16 22 C -0.12 -1.81 5.65 -26.73 -0.15 -1.96 16 23 C -0.12 -1.52 5.92 -26.74 -0.16 -1.68 16 24 C -0.12 -1.55 5.65 -26.73 -0.15 -1.70 16 25 C -0.11 -1.27 4.44 -26.75 -0.12 -1.39 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.50 6.52 -51.93 -0.34 0.17 16 28 H 0.06 0.59 6.37 -51.93 -0.33 0.26 16 29 H 0.07 0.92 6.58 -51.93 -0.34 0.57 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.95 8.01 -51.93 -0.42 0.54 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.07 1.32 7.98 -51.93 -0.41 0.90 16 35 H 0.35 7.17 9.04 45.56 0.41 7.58 16 36 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.09 1.56 2.89 -51.93 -0.15 1.41 16 39 H 0.08 1.17 6.00 -51.93 -0.31 0.86 16 40 H 0.05 0.59 6.39 -51.93 -0.33 0.26 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.08 1.46 6.42 -51.93 -0.33 1.12 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.94 6.45 -51.93 -0.34 0.60 16 47 H 0.06 0.68 6.51 -51.93 -0.34 0.34 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 336.88 15.07 5.08 5.08 Total: -1.00 -29.48 336.88 -9.09 -38.56 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.84 Total: 7.23 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -1.26 Total: -18.90 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.12 Total: -36.25 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.35 Total: -12.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.59 Total: 17.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.48 -9.09 -38.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119817665.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.593 kcal (2) G-P(sol) polarization free energy of solvation -29.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds