Wall clock time and date at job start Tue Mar 31 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00003 * 2 1 3 5 5 C 1.52994 * 109.47319 * 175.00105 * 4 2 1 6 6 C 1.50699 * 109.47316 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00146 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99829 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99823 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47442 * 59.99838 * 10 8 6 12 12 H 1.48503 * 109.46875 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47454 * 299.99402 * 10 8 6 14 14 N 1.46901 * 109.47020 * 120.00093 * 2 1 3 15 15 C 1.46905 * 110.99891 * 267.32217 * 14 2 1 16 16 C 1.53002 * 109.54256 * 295.60729 * 15 14 2 17 17 C 1.53005 * 109.46944 * 304.99692 * 16 15 14 18 18 C 1.52998 * 117.50000 * 243.62386 * 17 16 15 19 19 C 1.52998 * 117.49716 * 174.99850 * 17 16 15 20 20 C 1.53174 * 109.54354 * 175.43099 * 15 14 2 21 21 C 1.53287 * 109.06315 * 297.02860 * 20 15 14 22 22 O 1.42903 * 109.45840 * 302.44520 * 21 20 15 23 23 C 1.42899 * 114.09721 * 61.16078 * 22 21 20 24 24 C 1.53090 * 109.41356 * 298.83817 * 23 22 21 25 25 H 1.09006 * 109.46830 * 68.04413 * 1 2 3 26 26 H 1.09003 * 109.47396 * 308.04324 * 1 2 3 27 27 H 1.09001 * 109.47063 * 188.04243 * 1 2 3 28 28 H 1.09002 * 109.46879 * 295.00206 * 4 2 1 29 29 H 1.08997 * 109.47031 * 55.00131 * 4 2 1 30 30 H 1.09002 * 109.47227 * 299.99888 * 5 4 2 31 31 H 1.09005 * 109.47445 * 59.99543 * 5 4 2 32 32 H 0.96996 * 119.99635 * 180.02562 * 9 8 6 33 33 H 1.00900 * 111.00174 * 31.27170 * 14 2 1 34 34 H 1.08998 * 109.47194 * 64.99816 * 16 15 14 35 35 H 1.08997 * 109.47258 * 185.00295 * 16 15 14 36 36 H 1.08996 * 115.54783 * 29.33536 * 17 16 15 37 37 H 1.09000 * 117.49704 * 359.97438 * 18 17 16 38 38 H 1.08993 * 117.49940 * 145.02324 * 18 17 16 39 39 H 1.09001 * 117.50158 * 214.98102 * 19 17 16 40 40 H 1.09008 * 117.49937 * 0.02562 * 19 17 16 41 41 H 1.09000 * 109.52805 * 57.01907 * 20 15 14 42 42 H 1.09004 * 109.52363 * 177.21097 * 20 15 14 43 43 H 1.08998 * 109.46160 * 182.45015 * 21 20 15 44 44 H 1.09002 * 109.46725 * 62.44811 * 21 20 15 45 45 H 1.09003 * 109.48335 * 178.86056 * 23 22 21 46 46 H 1.09004 * 109.49622 * 58.82680 * 23 22 21 47 47 H 1.09006 * 109.52532 * 297.70164 * 24 23 22 48 48 H 1.09005 * 109.57447 * 177.54596 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0672 -1.3231 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4185 -1.3601 -2.8157 9 7 6.2690 -0.7754 -2.0006 10 14 6.0410 -2.2394 -4.3417 11 1 5.4495 -1.6119 -5.5506 12 1 7.5211 -2.1358 -4.4034 13 1 5.6476 -3.6701 -4.2837 14 7 2.0196 -0.6925 1.1994 15 6 2.2555 0.2564 2.2958 16 6 3.3782 1.2201 1.9059 17 6 4.6227 0.4212 1.5135 18 6 5.8730 0.5909 2.3787 19 6 5.8237 1.2027 0.9772 20 6 2.6545 -0.5104 3.5603 21 6 1.4917 -1.4141 3.9856 22 8 0.3235 -0.6187 4.1974 23 6 -0.1220 0.0844 3.0358 24 6 0.9738 1.0481 2.5729 25 1 -0.3633 0.3843 -0.9532 26 1 -0.3634 0.6333 0.8093 27 1 -0.3633 -1.0176 0.1438 28 1 1.7517 -1.7715 -1.2056 29 1 1.6055 -0.2617 -2.1369 30 1 3.8532 0.4370 -1.3573 31 1 3.9995 -1.0728 -0.4259 32 1 7.2196 -0.8011 -2.1917 33 1 1.3811 -1.4206 1.4826 34 1 3.0567 1.8299 1.0617 35 1 3.6129 1.8658 2.7521 36 1 4.4338 -0.5649 1.0893 37 1 5.8092 1.2721 3.2273 38 1 6.5070 -0.2837 2.5241 39 1 6.4253 0.7305 0.2005 40 1 5.7274 2.2860 0.9043 41 1 3.5352 -1.1190 3.3547 42 1 2.8775 0.1962 4.3597 43 1 1.7522 -1.9304 4.9096 44 1 1.2957 -2.1467 3.2027 45 1 -1.0239 0.6477 3.2754 46 1 -0.3391 -0.6283 2.2401 47 1 1.1629 1.7862 3.3524 48 1 0.6541 1.5542 1.6619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:52 Heat of formation + Delta-G solvation = -29.559050 kcal Electronic energy + Delta-G solvation = -24579.958152 eV Core-core repulsion = 21442.268172 eV Total energy + Delta-G solvation = -3137.689981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47418 -37.29392 -36.09908 -33.98039 -32.55063 -31.23596 -29.58755 -28.72895 -27.75768 -24.94565 -23.73376 -23.09896 -21.64712 -21.37793 -19.97528 -19.54289 -18.62726 -16.56577 -16.07454 -16.06601 -15.47850 -15.06796 -14.72634 -14.41979 -14.32831 -14.09421 -13.35245 -12.98907 -12.72022 -12.56759 -12.47414 -12.31716 -11.89245 -11.71419 -11.60371 -11.38944 -11.21848 -11.02698 -10.96579 -10.79083 -10.66117 -10.48752 -10.34805 -10.18967 -10.01902 -9.68233 -9.45856 -9.25157 -9.08017 -8.96424 -8.78271 -8.15835 -7.85392 -5.85805 -3.85164 3.39068 3.43534 3.46398 3.86598 4.42249 4.55878 4.58434 4.84277 4.91452 4.94810 5.04597 5.18583 5.28131 5.44563 5.49281 5.50515 5.53405 5.61010 5.63861 5.71590 5.73724 5.75627 5.87640 5.98977 5.99644 6.05140 6.11790 6.24120 6.27926 6.29425 6.30788 6.44831 6.51216 6.57370 6.73319 6.74641 6.93729 7.18642 7.19130 7.33070 7.38785 7.58085 7.83382 7.90567 8.15192 8.31664 8.62535 9.22614 9.76397 11.23889 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.005604 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.997245 B = 4995.568668 C = 5820.711680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.099 4.099 5 C 0.032 3.968 6 C -0.519 4.519 7 H 0.046 0.954 8 C 0.060 3.940 9 N -0.888 5.888 10 Si 0.883 3.117 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.280 1.280 14 N -0.657 5.657 15 C 0.122 3.878 16 C -0.070 4.070 17 C -0.127 4.127 18 C -0.202 4.202 19 C -0.171 4.171 20 C -0.139 4.139 21 C 0.056 3.944 22 O -0.387 6.387 23 C 0.055 3.945 24 C -0.191 4.191 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.009 0.991 31 H 0.040 0.960 32 H 0.256 0.744 33 H 0.330 0.670 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.138 0.862 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.336 3.234 11.712 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.028 4.028 3 H 0.093 0.907 4 C -0.137 4.137 5 C -0.005 4.005 6 C -0.558 4.558 7 H 0.065 0.935 8 C -0.140 4.140 9 N -0.527 5.527 10 Si 0.711 3.289 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.206 1.206 14 N -0.289 5.289 15 C 0.031 3.969 16 C -0.108 4.108 17 C -0.145 4.145 18 C -0.239 4.239 19 C -0.208 4.208 20 C -0.177 4.177 21 C -0.021 4.021 22 O -0.306 6.306 23 C -0.021 4.021 24 C -0.230 4.230 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.155 0.845 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.570 3.271 11.701 14.868 hybrid contribution -0.352 -0.173 -0.978 1.053 sum -8.922 3.098 10.724 14.290 Atomic orbital electron populations 1.22978 0.98840 1.01340 1.02014 1.21760 0.90724 0.98672 0.91606 0.90690 1.21647 1.00934 0.98247 0.92899 1.19121 0.88011 0.96505 0.96880 1.21330 0.91767 1.34054 1.08612 0.93545 1.24914 0.97119 0.95767 0.96232 1.69902 1.01956 1.44228 1.36659 0.86823 0.77520 0.80295 0.84218 1.20642 1.21521 1.20597 1.60693 1.51795 1.12548 1.03819 1.20887 0.93103 0.92116 0.90826 1.21195 0.93780 0.96015 0.99763 1.22417 0.87187 1.02934 1.01972 1.22968 1.03544 1.02967 0.94418 1.22987 1.03227 0.98198 0.96408 1.22240 0.99192 0.99682 0.96596 1.22694 0.85119 0.92825 1.01445 1.87892 1.44808 1.63187 1.34701 1.22748 0.96569 0.94492 0.88334 1.23129 0.97674 0.99764 1.02455 0.92403 0.92387 0.92933 0.93730 0.93952 0.97300 0.94152 0.93427 0.85003 0.91836 0.92772 0.84496 0.90684 0.89894 0.86396 0.90952 0.89306 0.91225 0.89094 0.92856 0.89509 0.92642 0.91228 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 7.49 37.16 0.28 -2.20 16 2 C 0.08 1.29 1.89 -67.71 -0.13 1.16 16 3 H 0.08 1.25 5.38 -51.93 -0.28 0.98 16 4 C -0.10 -1.98 4.82 -26.73 -0.13 -2.11 16 5 C 0.03 0.78 4.27 -27.89 -0.12 0.66 16 6 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 7 H 0.05 1.29 7.74 -52.49 -0.41 0.88 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -25.33 12.95 55.43 0.72 -24.61 16 10 Si 0.88 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.66 -9.73 4.26 -92.86 -0.40 -10.13 16 15 C 0.12 1.62 0.35 -131.42 -0.05 1.57 16 16 C -0.07 -1.04 4.26 -26.73 -0.11 -1.16 16 17 C -0.13 -2.24 3.98 -90.62 -0.36 -2.60 16 18 C -0.20 -3.30 10.18 -26.73 -0.27 -3.57 16 19 C -0.17 -3.23 10.25 -26.73 -0.27 -3.51 16 20 C -0.14 -1.73 4.90 -26.49 -0.13 -1.86 16 21 C 0.06 0.64 6.58 37.31 0.25 0.89 16 22 O -0.39 -4.91 10.77 -35.23 -0.38 -5.29 16 23 C 0.06 0.62 5.60 37.20 0.21 0.83 16 24 C -0.19 -2.24 4.31 -26.59 -0.11 -2.36 16 25 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 26 H 0.06 0.65 4.05 -51.93 -0.21 0.44 16 27 H 0.05 0.65 7.64 -51.93 -0.40 0.25 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 1.04 5.05 -51.93 -0.26 0.78 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.33 4.59 5.07 -39.29 -0.20 4.39 16 34 H 0.06 1.02 6.36 -51.93 -0.33 0.69 16 35 H 0.05 0.75 7.87 -51.93 -0.41 0.34 16 36 H 0.14 2.85 4.66 -51.93 -0.24 2.60 16 37 H 0.07 1.09 8.03 -51.93 -0.42 0.67 16 38 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.12 2.65 7.81 -51.93 -0.41 2.24 16 40 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 41 H 0.09 1.19 7.50 -51.93 -0.39 0.80 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.61 6.62 -51.93 -0.34 0.27 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.62 4.85 -51.93 -0.25 0.37 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 0.97 5.07 -51.93 -0.26 0.71 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -28.04 345.71 -9.40 -37.44 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.17 Total: 8.16 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -1.37 Total: -27.45 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.32 Total: -34.74 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.38 Total: -5.29 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.04 -9.40 -37.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.886 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds