Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46821 * 2 1 4 4 C 1.53002 * 109.47399 * 240.00003 * 2 1 3 5 5 C 1.52994 * 109.47319 * 175.00105 * 4 2 1 6 6 C 1.50699 * 109.47316 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00146 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99829 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99823 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47442 * 59.99838 * 10 8 6 12 12 H 1.48503 * 109.46875 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47454 * 299.99402 * 10 8 6 14 14 N 1.46901 * 109.47020 * 120.00093 * 2 1 3 15 15 C 1.46905 * 110.99891 * 267.32217 * 14 2 1 16 16 C 1.53002 * 109.54256 * 295.60729 * 15 14 2 17 17 C 1.53005 * 109.46944 * 304.99692 * 16 15 14 18 18 C 1.52998 * 117.50000 * 243.62386 * 17 16 15 19 19 C 1.52998 * 117.49716 * 174.99850 * 17 16 15 20 20 C 1.53174 * 109.54354 * 175.43099 * 15 14 2 21 21 C 1.53287 * 109.06315 * 297.02860 * 20 15 14 22 22 O 1.42903 * 109.45840 * 302.44520 * 21 20 15 23 23 C 1.42899 * 114.09721 * 61.16078 * 22 21 20 24 24 C 1.53090 * 109.41356 * 298.83817 * 23 22 21 25 25 H 1.09006 * 109.46830 * 68.04413 * 1 2 3 26 26 H 1.09003 * 109.47396 * 308.04324 * 1 2 3 27 27 H 1.09001 * 109.47063 * 188.04243 * 1 2 3 28 28 H 1.09002 * 109.46879 * 295.00206 * 4 2 1 29 29 H 1.08997 * 109.47031 * 55.00131 * 4 2 1 30 30 H 1.09002 * 109.47227 * 299.99888 * 5 4 2 31 31 H 1.09005 * 109.47445 * 59.99543 * 5 4 2 32 32 H 0.96996 * 119.99635 * 180.02562 * 9 8 6 33 33 H 1.00900 * 111.00174 * 31.27170 * 14 2 1 34 34 H 1.08998 * 109.47194 * 64.99816 * 16 15 14 35 35 H 1.08997 * 109.47258 * 185.00295 * 16 15 14 36 36 H 1.08996 * 115.54783 * 29.33536 * 17 16 15 37 37 H 1.09000 * 117.49704 * 359.97438 * 18 17 16 38 38 H 1.08993 * 117.49940 * 145.02324 * 18 17 16 39 39 H 1.09001 * 117.50158 * 214.98102 * 19 17 16 40 40 H 1.09008 * 117.49937 * 0.02562 * 19 17 16 41 41 H 1.09000 * 109.52805 * 57.01907 * 20 15 14 42 42 H 1.09004 * 109.52363 * 177.21097 * 20 15 14 43 43 H 1.08998 * 109.46160 * 182.45015 * 21 20 15 44 44 H 1.09002 * 109.46725 * 62.44811 * 21 20 15 45 45 H 1.09003 * 109.48335 * 178.86056 * 23 22 21 46 46 H 1.09004 * 109.49622 * 58.82680 * 23 22 21 47 47 H 1.09006 * 109.52532 * 297.70164 * 24 23 22 48 48 H 1.09005 * 109.57447 * 177.54596 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0672 -1.3231 -2.5444 7 1 3.3687 -1.8036 -3.2135 8 6 5.4185 -1.3601 -2.8157 9 7 6.2690 -0.7754 -2.0006 10 14 6.0410 -2.2394 -4.3417 11 1 5.4495 -1.6119 -5.5506 12 1 7.5211 -2.1358 -4.4034 13 1 5.6476 -3.6701 -4.2837 14 7 2.0196 -0.6925 1.1994 15 6 2.2555 0.2564 2.2958 16 6 3.3782 1.2201 1.9059 17 6 4.6227 0.4212 1.5135 18 6 5.8730 0.5909 2.3787 19 6 5.8237 1.2027 0.9772 20 6 2.6545 -0.5104 3.5603 21 6 1.4917 -1.4141 3.9856 22 8 0.3235 -0.6187 4.1974 23 6 -0.1220 0.0844 3.0358 24 6 0.9738 1.0481 2.5729 25 1 -0.3633 0.3843 -0.9532 26 1 -0.3634 0.6333 0.8093 27 1 -0.3633 -1.0176 0.1438 28 1 1.7517 -1.7715 -1.2056 29 1 1.6055 -0.2617 -2.1369 30 1 3.8532 0.4370 -1.3573 31 1 3.9995 -1.0728 -0.4259 32 1 7.2196 -0.8011 -2.1917 33 1 1.3811 -1.4206 1.4826 34 1 3.0567 1.8299 1.0617 35 1 3.6129 1.8658 2.7521 36 1 4.4338 -0.5649 1.0893 37 1 5.8092 1.2721 3.2273 38 1 6.5070 -0.2837 2.5241 39 1 6.4253 0.7305 0.2005 40 1 5.7274 2.2860 0.9043 41 1 3.5352 -1.1190 3.3547 42 1 2.8775 0.1962 4.3597 43 1 1.7522 -1.9304 4.9096 44 1 1.2957 -2.1467 3.2027 45 1 -1.0239 0.6477 3.2754 46 1 -0.3391 -0.6283 2.2401 47 1 1.1629 1.7862 3.3524 48 1 0.6541 1.5542 1.6619 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172486927.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = -44.910686 kcal Electronic energy + Delta-G solvation = -24580.623849 eV Core-core repulsion = 21442.268172 eV Total energy + Delta-G solvation = -3138.355678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53679 -38.46209 -37.46165 -35.57847 -34.26418 -32.31880 -31.21149 -29.79635 -29.01313 -26.81114 -24.69171 -24.14505 -23.28392 -22.88214 -21.37346 -20.96609 -19.76788 -18.22375 -17.59547 -16.98664 -16.72248 -16.45451 -16.09140 -15.75779 -15.73951 -15.32977 -14.63107 -14.35318 -14.21029 -13.94866 -13.76233 -13.48403 -13.28666 -13.14083 -12.83567 -12.79990 -12.68856 -12.45786 -12.35961 -12.25741 -12.16130 -12.02995 -11.68412 -11.55118 -11.36691 -11.17780 -10.89586 -10.85807 -10.71655 -10.50044 -10.28318 -10.21173 -9.02661 -8.02315 -6.10107 1.41146 1.42073 1.49355 2.47881 2.99625 3.18327 3.28069 3.29219 3.77270 3.88369 3.93116 4.10982 4.13890 4.19913 4.29265 4.36648 4.40536 4.44093 4.51125 4.54442 4.69361 4.73048 4.81387 4.83794 4.85320 4.91314 4.94971 4.96788 5.05515 5.13603 5.15076 5.20394 5.23940 5.28290 5.38024 5.39545 5.40698 5.55928 5.61206 5.68442 5.85057 6.07024 6.27419 6.30162 6.42474 6.48544 6.71456 7.08272 7.54826 9.04829 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.005604 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.997245 B = 4995.568668 C = 5820.711680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.093 3.907 3 H 0.064 0.936 4 C -0.092 4.092 5 C 0.047 3.953 6 C -0.547 4.547 7 H 0.042 0.958 8 C 0.011 3.989 9 N -0.908 5.908 10 Si 0.945 3.055 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.274 1.274 14 N -0.671 5.671 15 C 0.125 3.875 16 C -0.064 4.064 17 C -0.123 4.123 18 C -0.175 4.175 19 C -0.194 4.194 20 C -0.134 4.134 21 C 0.058 3.942 22 O -0.396 6.396 23 C 0.054 3.946 24 C -0.184 4.184 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.037 0.963 30 H -0.022 1.022 31 H 0.027 0.973 32 H 0.256 0.744 33 H 0.337 0.663 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.052 0.948 45 H 0.105 0.895 46 H 0.057 0.943 47 H 0.076 0.924 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.861 3.336 12.988 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.017 4.017 3 H 0.083 0.917 4 C -0.130 4.130 5 C 0.011 3.989 6 C -0.585 4.585 7 H 0.061 0.939 8 C -0.187 4.187 9 N -0.547 5.547 10 Si 0.771 3.229 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.200 1.200 14 N -0.303 5.303 15 C 0.034 3.966 16 C -0.102 4.102 17 C -0.141 4.141 18 C -0.212 4.212 19 C -0.231 4.231 20 C -0.172 4.172 21 C -0.019 4.019 22 O -0.316 6.316 23 C -0.022 4.022 24 C -0.223 4.223 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.056 0.944 30 H -0.004 1.004 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.158 0.842 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.124 0.876 44 H 0.070 0.930 45 H 0.123 0.877 46 H 0.075 0.925 47 H 0.095 0.905 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.108 3.368 12.980 16.792 hybrid contribution 0.194 -0.215 -1.395 1.424 sum -9.914 3.153 11.585 15.570 Atomic orbital electron populations 1.22863 0.95947 1.02395 1.03005 1.21467 0.92850 0.97230 0.90129 0.91745 1.21507 0.97668 0.98575 0.95298 1.18882 0.91143 0.93806 0.95109 1.21771 0.92240 1.34673 1.09864 0.93929 1.25688 0.97440 0.96511 0.99106 1.70054 1.01985 1.44761 1.37917 0.85831 0.76975 0.79293 0.80784 1.20045 1.21104 1.19979 1.60545 1.52328 1.13322 1.04147 1.20850 0.93414 0.91778 0.90553 1.21167 0.93050 0.96095 0.99845 1.22245 0.88496 1.01374 1.01982 1.22994 1.01921 1.02627 0.93675 1.22820 1.04440 0.98579 0.97268 1.22182 0.99118 0.99735 0.96182 1.22724 0.84469 0.92484 1.02211 1.87889 1.44959 1.63354 1.35358 1.22846 0.96826 0.94412 0.88120 1.23047 0.96776 0.99741 1.02755 0.92304 0.90200 0.92160 0.94171 0.94426 1.00363 0.95522 0.93542 0.84233 0.93202 0.90922 0.87839 0.87718 0.90348 0.90592 0.89985 0.90694 0.90385 0.87561 0.92992 0.87693 0.92494 0.90550 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.32 7.49 71.98 0.54 -3.78 16 2 C 0.09 2.88 1.89 44.91 0.08 2.97 16 3 H 0.06 2.15 5.38 -2.39 -0.01 2.14 16 4 C -0.09 -3.76 4.82 30.59 0.15 -3.61 16 5 C 0.05 2.43 4.27 29.85 0.13 2.56 16 6 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 7 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 8 C 0.01 0.65 5.46 84.66 0.46 1.12 16 9 N -0.91 -53.66 12.95 21.45 0.28 -53.38 16 10 Si 0.94 45.16 29.54 68.60 2.03 47.19 16 11 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 14 N -0.67 -19.47 4.26 -447.70 -1.91 -21.38 16 15 C 0.13 3.14 0.35 3.64 0.00 3.14 16 16 C -0.06 -1.86 4.26 30.60 0.13 -1.73 16 17 C -0.12 -4.41 3.98 -10.79 -0.04 -4.45 16 18 C -0.18 -5.65 10.18 30.60 0.31 -5.34 16 19 C -0.19 -7.62 10.25 30.60 0.31 -7.30 16 20 C -0.13 -3.08 4.90 30.75 0.15 -2.93 16 21 C 0.06 1.19 6.58 72.08 0.47 1.67 16 22 O -0.40 -8.85 10.77 -148.98 -1.60 -10.46 16 23 C 0.05 1.05 5.60 72.01 0.40 1.45 16 24 C -0.18 -3.82 4.31 30.68 0.13 -3.69 16 25 H 0.06 1.39 8.12 -2.38 -0.02 1.37 16 26 H 0.08 1.55 4.05 -2.39 -0.01 1.54 16 27 H 0.06 1.34 7.64 -2.39 -0.02 1.32 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.04 1.53 8.13 -2.39 -0.02 1.51 16 30 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 31 H 0.03 1.44 5.05 -2.38 -0.01 1.43 16 32 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.34 8.93 5.07 -89.69 -0.46 8.47 16 34 H 0.05 1.59 6.36 -2.39 -0.02 1.58 16 35 H 0.07 1.84 7.87 -2.39 -0.02 1.82 16 36 H 0.10 4.50 4.66 -2.39 -0.01 4.49 16 37 H 0.10 2.77 8.03 -2.39 -0.02 2.75 16 38 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.08 3.65 7.81 -2.39 -0.02 3.63 16 40 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 41 H 0.07 1.94 7.50 -2.39 -0.02 1.92 16 42 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.05 1.09 6.62 -2.39 -0.02 1.08 16 45 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.09 4.85 -2.39 -0.01 1.08 16 47 H 0.08 1.52 8.14 -2.38 -0.02 1.51 16 48 H 0.08 1.74 5.07 -2.38 -0.01 1.72 16 Total: -1.00 -62.24 345.71 2.75 -59.50 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.49 Total: 29.68 kcal Atomic # 6 Polarization: -54.61 SS G_CDS: 3.47 Total: -51.14 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.63 Total: -74.76 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.60 Total: -10.46 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -62.24 2.75 -59.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486927.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.586 kcal (2) G-P(sol) polarization free energy of solvation -62.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds