Wall clock time and date at job start Tue Mar 31 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47692 * 2 1 4 4 C 1.53004 * 109.47279 * 120.00385 * 2 1 3 5 5 C 1.52998 * 109.47422 * 184.99747 * 4 2 1 6 6 C 1.50695 * 109.47113 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00413 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99996 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99724 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99906 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47360 * 60.00236 * 10 8 6 12 12 H 1.48500 * 109.46825 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47111 * 299.99719 * 10 8 6 14 14 N 1.46899 * 109.47087 * 239.99816 * 2 1 3 15 15 C 1.46899 * 111.00302 * 92.28023 * 14 2 1 16 16 C 1.52999 * 109.54012 * 301.78474 * 15 14 2 17 17 C 1.52994 * 109.47545 * 304.70646 * 16 15 14 18 18 C 1.53001 * 117.49891 * 243.62421 * 17 16 15 19 19 C 1.53000 * 117.50346 * 174.99979 * 17 16 15 20 20 C 1.53172 * 109.54749 * 181.52101 * 15 14 2 21 21 C 1.53094 * 109.16193 * 297.11500 * 20 15 14 22 22 O 1.42907 * 109.41322 * 302.38718 * 21 20 15 23 23 C 1.42907 * 114.09185 * 61.16149 * 22 21 20 24 24 C 1.53094 * 109.41564 * 298.83578 * 23 22 21 25 25 H 1.09005 * 109.46894 * 51.97348 * 1 2 3 26 26 H 1.08997 * 109.47572 * 171.97897 * 1 2 3 27 27 H 1.09005 * 109.46747 * 291.97807 * 1 2 3 28 28 H 1.09006 * 109.46418 * 304.99446 * 4 2 1 29 29 H 1.09003 * 109.47348 * 64.98949 * 4 2 1 30 30 H 1.08995 * 109.46595 * 299.99826 * 5 4 2 31 31 H 1.09001 * 109.46848 * 59.99652 * 5 4 2 32 32 H 0.97002 * 119.99629 * 180.02562 * 9 8 6 33 33 H 1.00906 * 110.99639 * 328.32708 * 14 2 1 34 34 H 1.09007 * 109.47163 * 64.70670 * 16 15 14 35 35 H 1.09002 * 109.47216 * 184.70500 * 16 15 14 36 36 H 1.09005 * 115.55173 * 29.32783 * 17 16 15 37 37 H 1.08999 * 117.49911 * 359.97438 * 18 17 16 38 38 H 1.09002 * 117.50374 * 145.01900 * 18 17 16 39 39 H 1.08996 * 117.50309 * 214.98143 * 19 17 16 40 40 H 1.09004 * 117.49685 * 0.02562 * 19 17 16 41 41 H 1.08998 * 109.52588 * 57.01500 * 20 15 14 42 42 H 1.08995 * 109.52445 * 177.20663 * 20 15 14 43 43 H 1.09003 * 109.48098 * 182.40712 * 21 20 15 44 44 H 1.08997 * 109.49146 * 62.37544 * 21 20 15 45 45 H 1.09006 * 109.47660 * 178.85679 * 23 22 21 46 46 H 1.09002 * 109.49322 * 58.83226 * 23 22 21 47 47 H 1.08992 * 109.52443 * 297.71044 * 24 23 22 48 48 H 1.09002 * 109.57270 * 177.54484 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6135 1.3137 6 6 4.0670 -1.3234 2.5444 7 1 3.3685 -1.8032 3.2139 8 6 5.4184 -1.3604 2.8157 9 7 6.2690 -0.7766 2.0001 10 14 6.0408 -2.2399 4.3417 11 1 5.6473 -3.6706 4.2837 12 1 7.5208 -2.1352 4.4041 13 1 5.4493 -1.6123 5.5506 14 7 2.0196 -0.6925 -1.1994 15 6 2.2465 0.2550 -2.2987 16 6 0.9448 0.9949 -2.6136 17 6 -0.1600 -0.0208 -2.9109 18 6 -0.7630 -0.0174 -4.3171 19 6 -1.5740 0.5188 -3.1357 20 6 2.7192 -0.5054 -3.5415 21 6 4.0608 -1.1780 -3.2390 22 8 5.0088 -0.1873 -2.8363 23 6 4.6421 0.5236 -1.6521 24 6 3.3239 1.2646 -1.8908 25 1 -0.3633 0.6331 -0.8096 26 1 -0.3634 -1.0176 -0.1434 27 1 -0.3633 0.3846 0.9530 28 1 1.6054 -0.2617 2.1370 29 1 1.7515 -1.7716 1.2056 30 1 3.9993 -1.0730 0.4259 31 1 3.8532 0.4368 1.3573 32 1 7.2197 -0.8030 2.1908 33 1 1.3842 -1.4250 -1.4787 34 1 0.6570 1.6045 -1.7570 35 1 1.0924 1.6360 -3.4826 36 1 -0.0626 -0.9825 -2.4070 37 1 -0.3728 0.7086 -5.0302 38 1 -1.0623 -0.9770 -4.7387 39 1 -2.4067 -0.0879 -2.7801 40 1 -1.7170 1.5976 -3.0722 41 1 1.9829 -1.2643 -3.8062 42 1 2.8399 0.1913 -4.3709 43 1 4.4229 -1.6854 -4.1332 44 1 3.9309 -1.9041 -2.4365 45 1 5.4231 1.2422 -1.4031 46 1 4.5197 -0.1800 -0.8286 47 1 3.4568 1.9971 -2.6869 48 1 3.0195 1.7724 -0.9756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172486928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:54 Heat of formation + Delta-G solvation = -31.435515 kcal Electronic energy + Delta-G solvation = -24422.223116 eV Core-core repulsion = 21284.451766 eV Total energy + Delta-G solvation = -3137.771350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25954 -37.57819 -36.28215 -33.95108 -32.53926 -30.68071 -29.87545 -28.37873 -27.90493 -24.96294 -23.53121 -22.96771 -22.44690 -21.38067 -20.47558 -19.58686 -18.68845 -16.24843 -16.11142 -15.80221 -15.33333 -15.14664 -14.80248 -14.39751 -14.28961 -14.21059 -13.37318 -12.96892 -12.74536 -12.67493 -12.36816 -12.24787 -11.95345 -11.88114 -11.65870 -11.59515 -11.37401 -11.18742 -11.07425 -10.82043 -10.72138 -10.47067 -10.44118 -10.11808 -10.03846 -9.86860 -9.77587 -9.44513 -9.29685 -8.92628 -8.67890 -8.17448 -7.81608 -5.87485 -3.87920 3.39485 3.44235 3.46460 3.67204 4.38550 4.49159 4.55557 4.58888 4.79423 4.79971 4.95037 5.12214 5.25318 5.38939 5.47305 5.47980 5.49552 5.51614 5.61969 5.68902 5.70455 5.74325 5.78901 5.85129 5.96150 5.96266 5.99562 6.09532 6.15999 6.22024 6.29451 6.34962 6.36642 6.44535 6.50977 6.63544 6.69738 6.92411 6.98982 7.33752 7.57403 7.83948 7.85381 7.87654 8.08771 8.23173 8.59572 9.19429 9.74528 11.23131 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020672 B = 0.005232 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.162470 B = 5350.803832 C = 6269.236921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.080 3.920 3 H 0.074 0.926 4 C -0.099 4.099 5 C 0.029 3.971 6 C -0.520 4.520 7 H 0.049 0.951 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.885 3.115 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.280 1.280 14 N -0.658 5.658 15 C 0.121 3.879 16 C -0.118 4.118 17 C -0.143 4.143 18 C -0.181 4.181 19 C -0.183 4.183 20 C -0.135 4.135 21 C 0.067 3.933 22 O -0.390 6.390 23 C 0.052 3.948 24 C -0.138 4.138 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.006 0.994 32 H 0.259 0.741 33 H 0.333 0.667 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.103 0.897 47 H 0.059 0.941 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 3.095 -12.654 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.029 4.029 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.559 4.559 7 H 0.067 0.933 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.714 3.286 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.205 1.205 14 N -0.290 5.290 15 C 0.029 3.971 16 C -0.157 4.157 17 C -0.162 4.162 18 C -0.218 4.218 19 C -0.220 4.220 20 C -0.173 4.173 21 C -0.010 4.010 22 O -0.309 6.309 23 C -0.023 4.023 24 C -0.176 4.176 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.121 0.879 47 H 0.078 0.922 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.538 3.162 -12.566 17.350 hybrid contribution -0.955 -0.263 0.764 1.251 sum -12.493 2.899 -11.802 17.429 Atomic orbital electron populations 1.22909 0.98391 1.01493 1.02060 1.21778 0.91189 0.98485 0.91439 0.90807 1.21644 1.00501 0.98443 0.93123 1.19118 0.88412 0.96285 0.96927 1.21297 0.91797 1.34275 1.08524 0.93312 1.24960 0.97122 0.95727 0.96378 1.69938 1.02211 1.44190 1.36778 0.86779 0.77591 0.80301 0.83977 1.20457 1.21421 1.20533 1.60721 1.52100 1.12360 1.03780 1.20883 0.92767 0.92277 0.91148 1.22082 0.94685 0.97286 1.01676 1.22365 0.93809 1.00999 0.98979 1.23028 1.04708 1.02579 0.91505 1.22940 0.94742 1.00969 1.03346 1.22167 0.98425 1.00015 0.96699 1.22395 0.88007 0.90981 0.99586 1.87821 1.45756 1.52152 1.45198 1.22901 0.94269 0.96579 0.88600 1.22252 0.96572 0.97426 1.01386 0.91676 0.93195 0.92881 0.93826 0.93592 0.94375 0.97587 0.93160 0.84694 0.90854 0.92017 0.87731 0.89078 0.89173 0.89114 0.89128 0.91422 0.91633 0.90562 0.91770 0.90135 0.87905 0.92197 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 7.71 37.15 0.29 -2.18 16 2 C 0.08 1.26 1.91 -67.71 -0.13 1.13 16 3 H 0.07 1.23 5.25 -51.93 -0.27 0.95 16 4 C -0.10 -1.98 4.82 -26.73 -0.13 -2.11 16 5 C 0.03 0.73 4.09 -27.89 -0.11 0.62 16 6 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 7 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 10 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 N -0.66 -9.71 4.09 -92.87 -0.38 -10.09 16 15 C 0.12 1.60 0.30 -131.42 -0.04 1.56 16 16 C -0.12 -1.33 3.88 -26.73 -0.10 -1.43 16 17 C -0.14 -1.42 2.59 -90.62 -0.23 -1.66 16 18 C -0.18 -1.62 10.18 -26.73 -0.27 -1.89 16 19 C -0.18 -1.65 9.85 -26.73 -0.26 -1.92 16 20 C -0.13 -1.72 4.81 -26.59 -0.13 -1.84 16 21 C 0.07 1.03 6.68 37.21 0.25 1.28 16 22 O -0.39 -7.24 10.77 -35.23 -0.38 -7.62 16 23 C 0.05 0.98 6.68 37.21 0.25 1.23 16 24 C -0.14 -2.12 4.76 -26.59 -0.13 -2.25 16 25 H 0.06 0.76 3.72 -51.93 -0.19 0.56 16 26 H 0.05 0.62 7.76 -51.93 -0.40 0.22 16 27 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 28 H 0.04 0.88 8.13 -51.93 -0.42 0.45 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 1.01 5.38 -51.93 -0.28 0.73 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.33 4.52 6.23 -39.29 -0.24 4.27 16 34 H 0.07 0.87 5.70 -51.92 -0.30 0.58 16 35 H 0.06 0.67 7.88 -51.93 -0.41 0.27 16 36 H 0.10 1.11 5.41 -51.93 -0.28 0.83 16 37 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.77 7.50 -51.93 -0.39 0.38 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 1.08 7.75 -51.93 -0.40 0.68 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.10 2.27 4.29 -51.93 -0.22 2.05 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.07 1.17 5.99 -51.93 -0.31 0.86 16 LS Contribution 348.28 15.07 5.25 5.25 Total: -1.00 -29.20 348.28 -9.27 -38.48 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.31 Total: 5.78 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -1.17 Total: -22.88 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.36 Total: -35.91 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.38 Total: -7.62 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.20 -9.27 -38.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172486928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.041 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds