Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46467 * 2 1 4 4 C 1.52991 * 109.47386 * 239.99692 * 2 1 3 5 5 C 1.52999 * 109.47301 * 175.81272 * 4 2 1 6 6 C 1.50698 * 109.47388 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99913 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00207 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99733 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00051 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47411 * 89.99904 * 10 8 6 12 12 H 1.48505 * 109.47132 * 209.99853 * 10 8 6 13 13 H 1.48501 * 109.47212 * 329.99290 * 10 8 6 14 14 N 1.46908 * 109.46781 * 119.99420 * 2 1 3 15 15 C 1.46844 * 110.99896 * 289.34966 * 14 2 1 16 16 C 1.53039 * 109.52030 * 185.84280 * 15 14 2 17 17 C 1.53124 * 109.27885 * 300.81963 * 16 15 14 18 18 O 1.42893 * 109.52380 * 177.55854 * 17 16 15 19 19 C 1.42901 * 113.99741 * 150.12674 * 18 17 16 20 20 C 1.53788 * 113.61240 * 150.00196 * 19 18 17 21 21 C 1.53779 * 87.08033 * 89.19772 * 20 19 18 22 22 C 1.53783 * 87.08424 * 25.43421 * 21 20 19 23 23 C 1.53124 * 109.20987 * 57.62134 * 17 16 15 24 24 C 1.46846 * 110.99843 * 53.55889 * 14 2 1 25 25 H 1.09008 * 109.46567 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47266 * 299.99816 * 1 2 3 27 27 H 1.08997 * 109.46816 * 60.00548 * 1 2 3 28 28 H 1.08997 * 109.47140 * 295.81565 * 4 2 1 29 29 H 1.09004 * 109.47209 * 55.81338 * 4 2 1 30 30 H 1.08998 * 109.46764 * 300.00057 * 5 4 2 31 31 H 1.09004 * 109.46934 * 59.99898 * 5 4 2 32 32 H 0.96994 * 119.99859 * 180.02562 * 9 8 6 33 33 H 1.08992 * 109.46684 * 65.82759 * 15 14 2 34 34 H 1.09004 * 109.46516 * 305.85513 * 15 14 2 35 35 H 1.08998 * 109.50516 * 180.88126 * 16 15 14 36 36 H 1.09006 * 109.53679 * 60.77885 * 16 15 14 37 37 H 1.08999 * 109.51940 * 297.68878 * 17 16 15 38 38 H 1.09000 * 112.84995 * 18.80426 * 19 18 17 39 39 H 1.08992 * 113.61350 * 334.64779 * 20 19 18 40 40 H 1.08998 * 113.68759 * 203.75555 * 20 19 18 41 41 H 1.09007 * 113.61543 * 139.98022 * 21 20 19 42 42 H 1.08998 * 113.61883 * 270.87897 * 21 20 19 43 43 H 1.08995 * 113.61793 * 89.11449 * 22 21 20 44 44 H 1.09002 * 113.61001 * 220.02014 * 22 21 20 45 45 H 1.09002 * 109.50211 * 62.32184 * 23 17 16 46 46 H 1.08998 * 109.49962 * 182.43625 * 23 17 16 47 47 H 1.09000 * 109.46085 * 294.17402 * 24 14 2 48 48 H 1.09007 * 109.46080 * 54.15139 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5665 -0.6307 -1.3029 6 6 4.0688 -1.3406 -2.5336 7 1 3.3694 -1.8098 -3.2096 8 6 5.4214 -1.3919 -2.7960 9 7 6.2732 -0.8209 -1.9725 10 14 6.0440 -2.2713 -4.3219 11 1 6.1134 -1.3114 -5.4529 12 1 7.3971 -2.8234 -4.0576 13 1 5.1168 -3.3783 -4.6683 14 7 2.0197 -0.6924 1.1996 15 6 1.7668 0.1041 2.4070 16 6 2.4165 -0.5765 3.6140 17 6 1.8328 -1.9828 3.7761 18 8 2.4765 -2.6441 4.8671 19 6 1.6497 -3.5967 5.5387 20 6 2.4342 -4.7673 6.1547 21 6 2.5646 -3.9091 7.4240 22 6 1.2809 -3.1908 6.9754 23 6 2.0655 -2.7765 2.4875 24 6 1.4273 -2.0313 1.3130 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.7393 -1.7683 -1.2124 29 1 1.6168 -0.2526 -2.1376 30 1 3.8672 0.4164 -1.3396 31 1 3.9898 -1.0993 -0.4144 32 1 7.2247 -0.8567 -2.1573 33 1 0.6922 0.1848 2.5705 34 1 2.1906 1.1004 2.2803 35 1 2.2153 0.0067 4.5126 36 1 3.4931 -0.6451 3.4580 37 1 0.7630 -1.9127 3.9726 38 1 0.7944 -3.9110 4.9405 39 1 3.3856 -4.9634 5.6605 40 1 1.8371 -5.6682 6.2962 41 1 2.4477 -4.4755 8.3480 42 1 3.4454 -3.2671 7.4285 43 1 0.3675 -3.6599 7.3409 44 1 1.3016 -2.1140 7.1438 45 1 3.1363 -2.8807 2.3126 46 1 1.6138 -3.7640 2.5818 47 1 0.3542 -1.9405 1.4815 48 1 1.6046 -2.5861 0.3916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -39.284594 kcal Electronic energy + Delta-G solvation = -23068.080017 eV Core-core repulsion = 19929.968305 eV Total energy + Delta-G solvation = -3138.111712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.87900 -38.83711 -36.32044 -34.04237 -32.61775 -30.75760 -30.07337 -28.58790 -25.82586 -25.32661 -25.01995 -23.63326 -22.93860 -21.27710 -19.99390 -19.64916 -18.83812 -17.00829 -16.11367 -15.92263 -15.59883 -14.99797 -14.70014 -14.57273 -14.35386 -14.06826 -13.55978 -13.39457 -13.06392 -12.73377 -12.58649 -12.38048 -12.27937 -11.86729 -11.83513 -11.61586 -11.34812 -11.16737 -11.07735 -10.97944 -10.83449 -10.70869 -10.48716 -10.41511 -10.32818 -10.24041 -10.03182 -9.60974 -9.29112 -9.16558 -8.86000 -8.21114 -7.74060 -5.86004 -3.87425 3.38417 3.44647 3.47731 3.47890 4.24459 4.45977 4.49780 4.55811 4.70612 4.80359 4.92642 4.98865 5.17910 5.19523 5.31031 5.44793 5.46837 5.47552 5.49265 5.50378 5.57439 5.63859 5.70804 5.72826 5.73703 5.85181 5.87362 5.95456 6.04128 6.05520 6.12134 6.16723 6.27863 6.33124 6.34990 6.39986 6.54661 6.69458 6.89446 7.31224 7.32266 7.56686 7.60707 7.87354 8.09919 8.25674 8.59425 9.21683 9.75104 11.24903 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018253 B = 0.003759 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.637328 B = 7447.720099 C = 8379.076676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.102 4.102 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.517 5.517 15 C 0.059 3.941 16 C -0.112 4.112 17 C 0.094 3.906 18 O -0.357 6.357 19 C 0.065 3.935 20 C -0.145 4.145 21 C -0.134 4.134 22 C -0.163 4.163 23 C -0.137 4.137 24 C 0.057 3.943 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.008 0.992 31 H 0.032 0.968 32 H 0.258 0.742 33 H 0.027 0.973 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -3.168 16.612 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.241 5.241 15 C -0.069 4.069 16 C -0.150 4.150 17 C 0.036 3.964 18 O -0.276 6.276 19 C 0.007 3.993 20 C -0.182 4.182 21 C -0.171 4.171 22 C -0.201 4.201 23 C -0.175 4.175 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.007 -3.153 16.643 20.763 hybrid contribution -0.729 -0.438 -0.858 1.208 sum -12.736 -3.591 15.785 20.597 Atomic orbital electron populations 1.22510 0.98941 1.01610 1.01268 1.21869 0.91005 0.98579 0.91186 0.90440 1.21717 1.00877 0.98227 0.93135 1.18990 0.87993 0.96701 0.97012 1.21336 0.91713 1.34467 1.08259 0.93189 1.24995 0.97154 0.95818 0.96423 1.69980 1.02051 1.44654 1.36577 0.86697 0.78162 0.79970 0.83740 1.20866 1.21331 1.20049 1.62043 1.58488 1.02000 1.01563 1.22017 0.97463 0.97460 0.89956 1.21640 1.02608 0.93456 0.97254 1.22253 0.95393 0.92707 0.86044 1.87924 1.38959 1.54856 1.45849 1.23025 0.93535 0.90407 0.92373 1.23167 1.01619 0.96476 0.96983 1.22763 0.98372 0.98775 0.97212 1.23439 0.98210 1.01445 0.97001 1.22111 1.03620 0.97921 0.93876 1.22057 0.95124 0.90802 0.99073 0.92655 0.93573 0.92298 0.93418 0.93361 0.97316 0.94919 0.93242 0.95497 0.90360 0.91543 0.89808 0.92947 0.91357 0.90427 0.89397 0.91825 0.89762 0.89753 0.90976 0.89715 0.92036 0.95509 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.44 37.16 0.31 -2.23 16 2 C 0.08 1.39 2.31 -67.71 -0.16 1.23 16 3 H 0.08 1.36 7.97 -51.93 -0.41 0.94 16 4 C -0.10 -2.10 4.54 -26.74 -0.12 -2.22 16 5 C 0.03 0.79 4.85 -27.88 -0.14 0.66 16 6 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 10 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 N -0.52 -8.56 4.02 -226.68 -0.91 -9.47 16 15 C 0.06 0.82 5.14 -3.83 -0.02 0.80 16 16 C -0.11 -1.49 5.75 -26.65 -0.15 -1.65 16 17 C 0.09 1.21 2.55 -26.60 -0.07 1.14 16 18 O -0.36 -4.77 9.93 -35.23 -0.35 -5.12 16 19 C 0.07 0.69 4.20 -25.91 -0.11 0.58 16 20 C -0.15 -1.37 7.91 -25.92 -0.21 -1.58 16 21 C -0.13 -1.21 8.02 -25.92 -0.21 -1.42 16 22 C -0.16 -1.47 7.92 -25.91 -0.21 -1.68 16 23 C -0.14 -1.95 5.72 -26.65 -0.15 -2.10 16 24 C 0.06 0.87 4.53 -3.83 -0.02 0.85 16 25 H 0.05 0.75 6.45 -51.92 -0.34 0.41 16 26 H 0.05 0.58 6.84 -51.93 -0.36 0.22 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.97 6.28 -51.93 -0.33 0.65 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.03 0.93 7.73 -51.93 -0.40 0.52 16 32 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.03 0.34 6.90 -51.93 -0.36 -0.02 16 34 H 0.08 1.08 8.01 -51.93 -0.42 0.66 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.62 7.73 -51.93 -0.40 0.22 16 38 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.03 0.37 6.57 -51.93 -0.34 0.02 16 48 H 0.09 1.46 6.17 -51.93 -0.32 1.14 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -30.82 364.85 -10.80 -41.63 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -9.11 Total: -1.49 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -1.65 Total: -21.38 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: -0.17 Total: -36.28 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.35 Total: -5.12 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.82 -10.80 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.341 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds