Wall clock time and date at job start Tue Mar 31 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46959 * 2 1 4 4 C 1.52990 * 109.47336 * 120.00079 * 2 1 3 5 5 C 1.53004 * 109.47518 * 183.76405 * 4 2 1 6 6 C 1.50700 * 109.47572 * 175.92935 * 5 4 2 7 7 H 1.07993 * 119.99653 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00113 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00246 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99869 * 0.02562 * 8 6 5 11 11 H 1.48503 * 109.47109 * 89.99832 * 10 8 6 12 12 H 1.48496 * 109.46908 * 209.99868 * 10 8 6 13 13 H 1.48504 * 109.47213 * 329.99951 * 10 8 6 14 14 N 1.46904 * 109.46985 * 240.00309 * 2 1 3 15 15 C 1.46845 * 110.99723 * 308.76579 * 14 2 1 16 16 C 1.53042 * 109.52027 * 185.84264 * 15 14 2 17 17 C 1.53127 * 109.27651 * 300.81875 * 16 15 14 18 18 O 1.42900 * 109.51830 * 177.55950 * 17 16 15 19 19 C 1.42902 * 113.99404 * 150.12830 * 18 17 16 20 20 C 1.53781 * 113.61464 * 209.99751 * 19 18 17 21 21 C 1.53774 * 87.17524 * 220.06145 * 20 19 18 22 22 C 1.53785 * 87.08226 * 25.39084 * 21 20 19 23 23 C 1.53112 * 109.20958 * 57.62566 * 17 16 15 24 24 C 1.46844 * 110.99964 * 72.97864 * 14 2 1 25 25 H 1.08999 * 109.47260 * 299.99993 * 1 2 3 26 26 H 1.09001 * 109.47772 * 59.99758 * 1 2 3 27 27 H 1.09005 * 109.47306 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47695 * 303.76414 * 4 2 1 29 29 H 1.09006 * 109.47640 * 63.76267 * 4 2 1 30 30 H 1.09002 * 109.46655 * 295.93514 * 5 4 2 31 31 H 1.09006 * 109.46769 * 55.92849 * 5 4 2 32 32 H 0.96998 * 120.00754 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.46427 * 65.82899 * 15 14 2 34 34 H 1.08995 * 109.45424 * 305.84635 * 15 14 2 35 35 H 1.08997 * 109.50462 * 180.88277 * 16 15 14 36 36 H 1.08995 * 109.50340 * 60.76193 * 16 15 14 37 37 H 1.08997 * 109.51850 * 297.68836 * 17 16 15 38 38 H 1.08995 * 112.90831 * 341.25068 * 19 18 17 39 39 H 1.09004 * 113.61433 * 105.46533 * 20 19 18 40 40 H 1.09006 * 113.61418 * 334.65449 * 20 19 18 41 41 H 1.09001 * 113.61413 * 139.93671 * 21 20 19 42 42 H 1.08994 * 113.61871 * 270.83840 * 21 20 19 43 43 H 1.09001 * 113.61306 * 89.11007 * 22 21 20 44 44 H 1.08999 * 113.61337 * 219.93801 * 22 21 20 45 45 H 1.09006 * 109.50742 * 62.31978 * 23 17 16 46 46 H 1.09005 * 109.50299 * 182.43309 * 23 17 16 47 47 H 1.08998 * 109.46294 * 294.17020 * 24 14 2 48 48 H 1.08994 * 109.46801 * 54.14333 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5671 -0.6397 1.2974 6 6 4.0632 -1.2622 2.5770 7 1 3.3598 -1.6751 3.2848 8 6 5.4153 -1.3056 2.8436 9 7 5.8483 -1.8493 3.9600 10 14 6.6321 -0.5921 1.6189 11 1 6.8685 0.8399 1.9330 12 1 7.9144 -1.3360 1.7047 13 1 6.0806 -0.7131 0.2454 14 7 2.0196 -0.6925 -1.1995 15 6 1.3857 -2.0093 -1.3425 16 6 2.0229 -2.7590 -2.5147 17 6 1.8402 -1.9418 -3.7967 18 8 2.4827 -2.6098 -4.8844 19 6 1.8700 -2.3753 -6.1539 20 6 2.0228 -3.5474 -7.1376 21 6 2.2579 -2.4962 -8.2351 22 6 2.7444 -1.5554 -7.1201 23 6 2.4656 -0.5575 -3.6052 24 6 1.8166 0.1279 -2.4004 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.6227 -0.2479 2.1379 29 1 1.7328 -1.7666 1.2161 30 1 3.9866 -1.1757 0.4460 31 1 3.8766 0.4047 1.2576 32 1 6.7995 -1.8795 4.1477 33 1 0.3197 -1.8807 -1.5301 34 1 1.5268 -2.5816 -0.4257 35 1 1.5415 -3.7300 -2.6305 36 1 3.0863 -2.9001 -2.3215 37 1 0.7770 -1.8347 -4.0119 38 1 0.8479 -2.0061 -6.0700 39 1 1.1083 -4.1246 -7.2745 40 1 2.8927 -4.1735 -6.9391 41 1 3.0380 -2.7726 -8.9444 42 1 1.3421 -2.1602 -8.7213 43 1 3.8121 -1.6361 -6.9157 44 1 2.4137 -0.5242 -7.2436 45 1 3.5363 -0.6628 -3.4297 46 1 2.3003 0.0434 -4.4995 47 1 0.7486 0.2464 -2.5831 48 1 2.2704 1.1077 -2.2520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491031.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:00 Heat of formation + Delta-G solvation = -39.261082 kcal Electronic energy + Delta-G solvation = -23100.047340 eV Core-core repulsion = 19961.936648 eV Total energy + Delta-G solvation = -3138.110692 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.91153 -38.90123 -36.52287 -34.20996 -32.61189 -30.90906 -30.39969 -28.82293 -25.89732 -25.48867 -25.09296 -23.48953 -23.02162 -21.04317 -20.26047 -19.72350 -18.89186 -17.35762 -16.55236 -16.08084 -15.72975 -15.08865 -14.74612 -14.58940 -14.19060 -13.90522 -13.86176 -13.41012 -12.84466 -12.68499 -12.60989 -12.58646 -12.39845 -12.08987 -11.93545 -11.92792 -11.45161 -11.44027 -11.35632 -11.09637 -10.90434 -10.76821 -10.64735 -10.56620 -10.39263 -10.21101 -9.73601 -9.61473 -9.41539 -9.37154 -8.97897 -8.40657 -7.88833 -5.92196 -3.88408 3.41701 3.48891 3.56346 3.58342 4.12988 4.33887 4.38434 4.58816 4.60294 4.62328 4.82292 4.87364 5.05345 5.09942 5.19237 5.34119 5.37300 5.40580 5.42714 5.44139 5.52876 5.54929 5.59004 5.62049 5.63870 5.68106 5.76723 5.85766 5.93185 5.96137 6.01304 6.07370 6.19515 6.21824 6.25250 6.28415 6.44219 6.56157 6.72337 7.10877 7.27079 7.42523 7.44916 7.55039 7.75708 7.96639 8.67700 9.13797 9.72260 11.21614 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018863 B = 0.003962 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.026557 B = 7064.640219 C = 7879.536162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.077 0.923 4 C -0.093 4.093 5 C -0.005 4.005 6 C -0.517 4.517 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.522 5.522 15 C 0.057 3.943 16 C -0.114 4.114 17 C 0.092 3.908 18 O -0.365 6.365 19 C 0.062 3.938 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.136 4.136 24 C 0.058 3.942 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.004 0.996 32 H 0.261 0.739 33 H 0.031 0.969 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 1.226 -22.580 25.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.029 4.029 3 H 0.095 0.905 4 C -0.130 4.130 5 C -0.042 4.042 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.246 5.246 15 C -0.071 4.071 16 C -0.152 4.152 17 C 0.035 3.965 18 O -0.284 6.284 19 C 0.004 3.996 20 C -0.176 4.176 21 C -0.180 4.180 22 C -0.194 4.194 23 C -0.174 4.174 24 C -0.070 4.070 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.084 0.993 -22.401 25.012 hybrid contribution -0.343 0.728 -0.639 1.028 sum -11.427 1.721 -23.040 25.775 Atomic orbital electron populations 1.22487 0.98544 1.01845 1.01370 1.21912 0.91460 0.98434 0.91123 0.90494 1.21527 0.99201 0.98864 0.93455 1.19456 0.91230 0.96100 0.97422 1.21261 0.92656 1.37920 1.03698 0.91449 1.25018 0.98490 0.94981 0.95105 1.69924 1.14501 1.45892 1.24648 0.86786 0.80479 0.79027 0.83141 1.20628 1.21734 1.18392 1.62067 1.57986 1.02693 1.01872 1.22092 0.95135 0.90954 0.98936 1.21680 1.03580 0.97862 0.92098 1.22265 0.94859 0.92235 0.87188 1.88002 1.54864 1.70849 1.14643 1.23787 0.95969 0.96762 0.83055 1.23216 1.02764 0.96887 0.94753 1.22657 1.01559 0.97460 0.96370 1.23519 1.01481 0.98543 0.95901 1.22099 1.02475 0.95668 0.97138 1.22011 0.97772 0.97045 0.90180 0.92135 0.93578 0.92411 0.92636 0.92871 0.95208 0.97748 0.92978 0.95120 0.89234 0.91292 0.89860 0.92961 0.89956 0.91263 0.89140 0.90868 0.90196 0.89204 0.91528 0.90073 0.92000 0.95448 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.40 37.16 0.31 -2.08 16 2 C 0.08 1.25 2.31 -67.72 -0.16 1.10 16 3 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 4 C -0.09 -1.83 4.58 -26.73 -0.12 -1.95 16 5 C 0.00 -0.11 3.87 -27.88 -0.11 -0.22 16 6 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 7 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.91 13.96 55.43 0.77 -28.14 16 10 Si 0.88 22.68 27.47 -169.99 -4.67 18.01 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 13 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 14 N -0.52 -8.09 4.06 -226.70 -0.92 -9.01 16 15 C 0.06 0.80 4.47 -3.83 -0.02 0.78 16 16 C -0.11 -1.54 5.75 -26.64 -0.15 -1.69 16 17 C 0.09 1.12 2.67 -26.61 -0.07 1.05 16 18 O -0.36 -4.62 10.01 -35.23 -0.35 -4.97 16 19 C 0.06 0.61 4.28 -25.83 -0.11 0.50 16 20 C -0.14 -1.17 7.90 -25.92 -0.20 -1.38 16 21 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 22 C -0.16 -1.36 7.92 -25.82 -0.20 -1.57 16 23 C -0.14 -1.68 5.72 -26.65 -0.15 -1.83 16 24 C 0.06 0.75 5.18 -3.83 -0.02 0.73 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.54 6.93 -51.93 -0.36 0.18 16 27 H 0.06 0.74 6.45 -51.93 -0.33 0.41 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.05 6.39 -51.93 -0.33 0.72 16 30 H 0.03 0.75 6.89 -51.93 -0.36 0.39 16 31 H 0.00 0.10 7.57 -51.93 -0.39 -0.29 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.03 0.39 6.57 -51.93 -0.34 0.05 16 34 H 0.09 1.40 6.28 -51.93 -0.33 1.07 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.58 7.43 -51.93 -0.39 0.19 16 38 H 0.08 0.71 7.46 -51.93 -0.39 0.33 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.03 0.32 6.98 -51.93 -0.36 -0.04 16 48 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -31.61 361.35 -10.44 -42.05 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -9.07 Total: -1.94 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.65 Total: -21.44 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.15 Total: -37.15 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.35 Total: -4.97 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.61 -10.44 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491031.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.789 kcal (2) G-P(sol) polarization free energy of solvation -31.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds