Wall clock time and date at job start Tue Mar 31 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00444 * 2 1 4 4 C 1.52999 * 109.47289 * 180.02562 * 3 2 1 5 5 C 1.54159 * 111.79865 * 61.01089 * 4 3 2 6 6 C 1.54837 * 104.33049 * 146.11854 * 5 4 3 7 7 C 1.54848 * 102.74010 * 321.83356 * 6 5 4 8 8 C 1.54171 * 104.31501 * 38.18327 * 7 6 5 9 9 H 1.09004 * 111.07145 * 214.25676 * 8 7 6 10 10 C 1.54319 * 109.65091 * 89.23094 * 8 7 6 11 11 N 1.48531 * 104.67682 * 269.97748 * 10 8 7 12 12 C 1.46895 * 110.99993 * 200.82023 * 11 10 8 13 13 H 1.09009 * 109.46898 * 182.38284 * 12 11 10 14 14 C 1.53004 * 109.47247 * 62.38545 * 12 11 10 15 15 C 1.52995 * 109.47512 * 302.38237 * 12 11 10 16 16 C 1.53000 * 109.47117 * 294.74608 * 15 12 11 17 17 C 1.50705 * 109.47319 * 175.24900 * 16 15 12 18 18 H 1.08001 * 119.99728 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00016 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00453 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99784 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47064 * 59.99828 * 21 19 17 23 23 H 1.48496 * 109.47048 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47119 * 299.99752 * 21 19 17 25 25 C 1.49951 * 104.82899 * 320.93030 * 11 10 8 26 26 H 1.08995 * 109.47489 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46919 * 59.99944 * 1 2 3 28 28 H 1.09000 * 109.46402 * 299.99984 * 1 2 3 29 29 H 1.09004 * 109.47104 * 300.00553 * 3 2 1 30 30 H 1.09000 * 109.46775 * 59.99769 * 3 2 1 31 31 H 1.09000 * 110.46355 * 264.83045 * 5 4 3 32 32 H 1.08999 * 110.46060 * 27.40765 * 5 4 3 33 33 H 1.09001 * 110.75735 * 80.14124 * 6 5 4 34 34 H 1.08996 * 110.76299 * 203.33775 * 6 5 4 35 35 H 1.08996 * 110.46483 * 156.89679 * 7 6 5 36 36 H 1.09004 * 110.46120 * 279.35349 * 7 6 5 37 37 H 1.09001 * 110.39565 * 28.77299 * 10 8 7 38 38 H 1.09002 * 110.39519 * 151.06465 * 10 8 7 39 39 H 1.09002 * 109.47247 * 186.34995 * 14 12 11 40 40 H 1.08997 * 109.47042 * 306.35173 * 14 12 11 41 41 H 1.09001 * 109.47095 * 66.35020 * 14 12 11 42 42 H 1.09007 * 109.46973 * 54.74044 * 15 12 11 43 43 H 1.08998 * 109.47481 * 174.74157 * 15 12 11 44 44 H 1.09000 * 109.47403 * 295.24862 * 16 15 12 45 45 H 1.09004 * 109.47244 * 55.25097 * 16 15 12 46 46 H 0.96996 * 120.00416 * 180.02562 * 20 19 17 47 47 H 1.09002 * 110.16663 * 280.19335 * 25 11 10 48 48 H 1.09001 * 111.27984 * 157.34608 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 4.0509 0.4480 -1.2530 6 6 5.4073 1.1262 -1.5655 7 6 5.1268 2.6148 -1.2442 8 6 4.2248 2.5716 0.0054 9 1 3.5000 3.3857 -0.0062 10 6 5.0991 2.5757 1.2770 11 7 5.3504 1.1406 1.5656 12 6 5.7319 0.9451 2.9706 13 1 5.9511 -0.1086 3.1443 14 6 4.5800 1.3827 3.8775 15 6 6.9736 1.7825 3.2832 16 6 8.1597 1.2589 2.4708 17 6 9.3524 2.1539 2.6891 18 1 9.2725 3.0102 3.3423 19 6 10.5454 1.8794 2.0550 20 7 10.6429 0.8364 1.2599 21 14 12.0240 2.9884 2.3262 22 1 12.3780 2.9976 3.7684 23 1 13.1751 2.4803 1.5376 24 1 11.6944 4.3687 1.8886 25 6 4.0535 0.4542 1.2562 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 0.5138 0.8900 29 1 1.6887 1.8464 -0.8900 30 1 1.6887 1.8463 0.8900 31 1 4.1947 -0.6113 -1.0400 32 1 3.3585 0.5798 -2.0845 33 1 6.1933 0.7333 -0.9205 34 1 5.6708 0.9977 -2.6153 35 1 6.0569 3.1391 -1.0249 36 1 4.6076 3.0927 -2.0750 37 1 6.0387 3.0957 1.0902 38 1 4.5647 3.0434 2.1039 39 1 4.9022 1.3445 4.9182 40 1 4.2859 2.4015 3.6254 41 1 3.7312 0.7137 3.7352 42 1 6.7851 2.8236 3.0211 43 1 7.2017 1.7111 4.3466 44 1 8.4017 0.2460 2.7927 45 1 7.9000 1.2514 1.4122 46 1 11.4823 0.6431 0.8141 47 1 3.3551 0.5799 2.0836 48 1 4.2067 -0.6041 1.0447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172495967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:13 Heat of formation + Delta-G solvation = -56.045259 kcal Electronic energy + Delta-G solvation = -23929.600856 eV Core-core repulsion = 20790.762347 eV Total energy + Delta-G solvation = -3138.838509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.40895 -37.73384 -36.33882 -33.21233 -31.65471 -30.88661 -29.59038 -28.49034 -26.74321 -25.56086 -25.04184 -24.31827 -22.54746 -20.86275 -20.09267 -19.12470 -18.30303 -16.69390 -16.12079 -15.93819 -15.84197 -14.98068 -14.95381 -14.42480 -14.09780 -13.75438 -13.58391 -13.45329 -12.89345 -12.61360 -12.55935 -12.31672 -11.83971 -11.71186 -11.61522 -11.42960 -11.22979 -11.00573 -10.80601 -10.68535 -10.64218 -10.50292 -10.42222 -10.40525 -10.19340 -10.05182 -10.00658 -9.74642 -9.55024 -9.16108 -8.85598 -8.20428 -7.74715 -5.85800 -3.87276 3.39529 3.44065 3.46288 3.60822 4.37936 4.55636 4.63350 4.70037 4.86314 5.07359 5.09594 5.23453 5.29294 5.31723 5.40605 5.46187 5.49283 5.52112 5.55381 5.65261 5.69105 5.72135 5.76538 5.80060 5.87961 6.05693 6.09600 6.21916 6.29461 6.30347 6.33692 6.39170 6.41600 6.46443 6.51435 6.59154 6.71222 6.88492 6.93389 7.04076 7.30110 7.41560 7.64866 7.87448 8.09927 8.25305 8.59522 9.21420 9.75170 11.24964 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.004394 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.335036 B = 6371.272044 C = 6936.507688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.081 3.919 4 C -0.063 4.063 5 C -0.096 4.096 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.085 4.085 9 H 0.074 0.926 10 C 0.039 3.961 11 N -0.485 5.485 12 C 0.070 3.930 13 H 0.078 0.922 14 C -0.187 4.187 15 C -0.103 4.103 16 C 0.029 3.971 17 C -0.519 4.519 18 H 0.049 0.951 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.885 3.115 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.045 3.955 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.008 0.992 45 H 0.034 0.966 46 H 0.258 0.742 47 H 0.044 0.956 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.005 1.135 -3.458 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.004 3.996 4 C -0.063 4.063 5 C -0.134 4.134 6 C -0.159 4.159 7 C -0.149 4.149 8 C -0.104 4.104 9 H 0.092 0.908 10 C -0.089 4.089 11 N -0.208 5.208 12 C -0.039 4.039 13 H 0.096 0.904 14 C -0.246 4.246 15 C -0.141 4.141 16 C -0.008 4.008 17 C -0.558 4.558 18 H 0.067 0.933 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.714 3.286 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.083 4.083 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.027 0.973 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.305 0.652 -3.879 19.701 hybrid contribution -0.087 1.170 0.753 1.394 sum -19.391 1.822 -3.126 19.726 Atomic orbital electron populations 1.22712 0.81626 1.02543 0.99641 1.87925 1.19030 1.27959 1.95304 1.22539 0.93064 0.84447 0.99577 1.21884 0.91323 0.95941 0.97189 1.22246 0.96449 0.99376 0.95305 1.22469 0.97944 0.94796 1.00683 1.22318 0.99166 0.97651 0.95760 1.22432 0.96469 0.95124 0.96391 0.90809 1.23193 0.99481 0.91328 0.94928 1.65765 1.26973 1.07469 1.20619 1.21960 0.94854 1.01011 0.86025 0.90399 1.22536 0.99914 1.01131 1.01021 1.21730 0.94637 0.97941 0.99755 1.19013 0.90152 0.95419 0.96227 1.21288 0.96138 1.11298 1.27045 0.93284 1.24977 0.98577 0.95266 0.95447 1.69964 1.25874 1.27163 1.30219 0.86775 0.82690 0.81107 0.78057 1.20472 1.21405 1.20417 1.23431 0.90784 0.98985 0.95064 0.89777 0.94363 0.94384 0.93361 0.93690 0.91484 0.92712 0.89204 0.92581 0.90926 0.92719 0.89087 0.94162 0.92361 0.92699 0.93097 0.93380 0.93563 0.97314 0.94791 0.93192 0.93743 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.54 10.21 -35.23 -0.36 -4.90 16 3 C 0.08 0.90 4.75 37.16 0.18 1.08 16 4 C -0.06 -0.81 0.78 -152.21 -0.12 -0.93 16 5 C -0.10 -1.28 5.61 -25.16 -0.14 -1.42 16 6 C -0.12 -1.77 6.56 -24.79 -0.16 -1.94 16 7 C -0.11 -1.52 6.30 -25.14 -0.16 -1.67 16 8 C -0.09 -1.12 3.55 -88.32 -0.31 -1.43 16 9 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 10 C 0.04 0.60 4.58 -2.23 -0.01 0.59 16 11 N -0.49 -8.16 4.17 -220.89 -0.92 -9.08 16 12 C 0.07 1.23 2.55 -67.72 -0.17 1.06 16 13 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 14 C -0.19 -2.70 8.39 37.16 0.31 -2.39 16 15 C -0.10 -2.15 4.43 -26.73 -0.12 -2.26 16 16 C 0.03 0.76 4.92 -27.88 -0.14 0.62 16 17 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 18 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.04 0.65 5.24 -1.42 -0.01 0.65 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.94 7.42 -51.93 -0.39 0.56 16 32 H 0.05 0.67 7.95 -51.93 -0.41 0.26 16 33 H 0.09 1.61 7.81 -51.93 -0.41 1.20 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.09 7.50 -51.93 -0.39 0.70 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.62 6.88 -51.93 -0.36 1.26 16 38 H 0.04 0.59 5.71 -51.93 -0.30 0.30 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.77 5.89 -51.93 -0.31 0.46 16 41 H 0.05 0.68 6.31 -51.93 -0.33 0.35 16 42 H 0.05 0.99 6.61 -51.92 -0.34 0.65 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.03 0.95 7.64 -51.93 -0.40 0.55 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.04 0.63 5.35 -51.93 -0.28 0.35 16 48 H 0.08 1.25 7.42 -51.93 -0.39 0.86 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -30.42 357.72 -9.21 -39.63 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.88 Total: -1.16 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -0.15 Total: -20.34 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.18 Total: -35.67 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.36 Total: -4.90 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.42 -9.21 -39.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.413 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds