Wall clock time and date at job start Tue Mar 31 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99830 * 2 1 4 4 C 1.52998 * 109.46921 * 180.02562 * 3 2 1 5 5 C 1.54159 * 111.79801 * 61.01544 * 4 3 2 6 6 C 1.54842 * 104.32945 * 146.11447 * 5 4 3 7 7 C 1.54841 * 102.73763 * 321.83076 * 6 5 4 8 8 C 1.54160 * 104.32121 * 38.18921 * 7 6 5 9 9 H 1.08998 * 111.07418 * 214.25805 * 8 7 6 10 10 C 1.54317 * 109.65605 * 89.22069 * 8 7 6 11 11 N 1.48524 * 104.68196 * 269.98048 * 10 8 7 12 12 C 1.46897 * 111.00232 * 200.81924 * 11 10 8 13 13 H 1.09003 * 109.46960 * 55.51190 * 12 11 10 14 14 C 1.53006 * 109.47167 * 175.51223 * 12 11 10 15 15 C 1.53000 * 109.47432 * 295.51133 * 12 11 10 16 16 C 1.53000 * 109.47506 * 174.33687 * 15 12 11 17 17 C 1.50700 * 109.47084 * 185.17838 * 16 15 12 18 18 H 1.07997 * 120.00093 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99854 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00270 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47036 * 89.99774 * 21 19 17 23 23 H 1.48495 * 109.47282 * 209.99999 * 21 19 17 24 24 H 1.48508 * 109.46718 * 330.00049 * 21 19 17 25 25 C 1.49949 * 104.82946 * 320.92909 * 11 10 8 26 26 H 1.09002 * 109.47167 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47623 * 59.99438 * 1 2 3 28 28 H 1.09006 * 109.46929 * 299.99272 * 1 2 3 29 29 H 1.08996 * 109.46842 * 300.00426 * 3 2 1 30 30 H 1.08996 * 109.46808 * 60.00275 * 3 2 1 31 31 H 1.09000 * 110.45988 * 264.82604 * 5 4 3 32 32 H 1.09000 * 110.45804 * 27.40381 * 5 4 3 33 33 H 1.09004 * 110.75512 * 80.14784 * 6 5 4 34 34 H 1.09002 * 110.75610 * 203.33035 * 6 5 4 35 35 H 1.09007 * 110.46109 * 156.89636 * 7 6 5 36 36 H 1.08997 * 110.46456 * 279.34826 * 7 6 5 37 37 H 1.09004 * 110.39547 * 28.78474 * 10 8 7 38 38 H 1.09003 * 110.39272 * 151.18210 * 10 8 7 39 39 H 1.08993 * 109.47210 * 59.99995 * 14 12 11 40 40 H 1.08999 * 109.47090 * 180.02562 * 14 12 11 41 41 H 1.09000 * 109.47212 * 300.00019 * 14 12 11 42 42 H 1.09007 * 109.46873 * 294.34269 * 15 12 11 43 43 H 1.08999 * 109.46724 * 54.33394 * 15 12 11 44 44 H 1.08994 * 109.46765 * 305.18093 * 16 15 12 45 45 H 1.09000 * 109.47054 * 65.17546 * 16 15 12 46 46 H 0.97001 * 120.00353 * 179.97438 * 20 19 17 47 47 H 1.09002 * 110.17053 * 280.19014 * 25 11 10 48 48 H 1.09004 * 111.27805 * 157.34181 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0508 0.4483 -1.2531 6 6 5.4072 1.1267 -1.5655 7 6 5.1264 2.6152 -1.2442 8 6 4.2246 2.5720 0.0053 9 1 3.4997 3.3860 -0.0062 10 6 5.0989 2.5760 1.2769 11 7 5.3502 1.1409 1.5655 12 6 5.7319 0.9454 2.9705 13 1 4.9637 1.3686 3.6179 14 6 5.8729 -0.5509 3.2572 15 6 7.0664 1.6441 3.2386 16 6 7.3946 1.5616 4.7307 17 6 8.6423 2.3575 5.0152 18 1 9.1501 2.8710 4.2123 19 6 9.1355 2.4299 6.3007 20 7 8.5169 1.8049 7.2786 21 14 10.6817 3.4169 6.6537 22 1 10.3110 4.8168 6.9824 23 1 11.4030 2.8130 7.8026 24 1 11.5602 3.4056 5.4563 25 6 4.0535 0.4545 1.2562 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 1.6885 1.8464 -0.8899 30 1 1.6886 1.8464 0.8900 31 1 4.1947 -0.6109 -1.0400 32 1 3.3583 0.5801 -2.0845 33 1 6.1932 0.7337 -0.9207 34 1 5.6706 0.9982 -2.6154 35 1 6.0565 3.1397 -1.0249 36 1 4.6073 3.0930 -2.0749 37 1 6.0385 3.0962 1.0903 38 1 4.5637 3.0418 2.1044 39 1 6.6410 -0.9740 2.6099 40 1 6.1557 -0.6960 4.2999 41 1 4.9222 -1.0487 3.0663 42 1 7.8541 1.1548 2.6656 43 1 6.9955 2.6898 2.9393 44 1 6.5646 1.9683 5.3082 45 1 7.5560 0.5205 5.0102 46 1 8.8640 1.8555 8.1829 47 1 3.3550 0.5801 2.0836 48 1 4.2067 -0.6038 1.0447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172495969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:15 Heat of formation + Delta-G solvation = -65.137272 kcal Electronic energy + Delta-G solvation = -23398.756780 eV Core-core repulsion = 20259.524011 eV Total energy + Delta-G solvation = -3139.232768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45117 -37.73445 -36.33605 -33.44562 -31.90262 -31.21028 -29.73172 -28.14298 -26.89744 -25.90948 -24.81949 -24.37258 -22.49814 -21.01145 -20.25879 -19.26437 -18.61919 -16.64698 -16.33797 -15.92454 -15.87601 -15.48487 -14.70717 -14.39249 -14.20526 -13.92736 -13.69794 -13.35743 -13.20487 -12.85094 -12.40945 -12.27727 -11.89833 -11.85588 -11.77468 -11.39841 -11.16578 -11.02924 -10.90419 -10.85778 -10.81530 -10.59152 -10.55233 -10.52270 -10.42680 -10.28698 -10.10307 -9.82095 -9.56012 -9.22188 -8.96144 -8.29550 -8.03957 -5.95659 -3.97275 3.34348 3.40478 3.44347 3.52734 4.22233 4.46569 4.49973 4.51524 4.71437 4.99555 5.01944 5.14285 5.19154 5.22132 5.35448 5.37960 5.40065 5.43651 5.48985 5.56056 5.60012 5.61240 5.70656 5.75495 5.93993 5.99693 6.04177 6.07655 6.08513 6.12892 6.21715 6.22936 6.34960 6.38168 6.51829 6.53887 6.69506 6.80295 6.83588 6.96909 7.15115 7.29823 7.54195 7.74458 7.90736 8.05565 8.49377 9.10109 9.66340 11.15722 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.003610 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.782227 B = 7753.724071 C = 8295.215237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.079 3.921 4 C -0.064 4.064 5 C -0.097 4.097 6 C -0.121 4.121 7 C -0.111 4.111 8 C -0.086 4.086 9 H 0.077 0.923 10 C 0.043 3.957 11 N -0.504 5.504 12 C 0.072 3.928 13 H 0.035 0.965 14 C -0.140 4.140 15 C -0.098 4.098 16 C 0.023 3.977 17 C -0.517 4.517 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.055 3.945 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.011 0.989 45 H 0.019 0.981 46 H 0.259 0.741 47 H 0.038 0.962 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.714 -1.530 -17.586 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.003 3.997 4 C -0.065 4.065 5 C -0.134 4.134 6 C -0.158 4.158 7 C -0.149 4.149 8 C -0.105 4.105 9 H 0.095 0.905 10 C -0.085 4.085 11 N -0.229 5.229 12 C -0.036 4.036 13 H 0.053 0.947 14 C -0.197 4.197 15 C -0.136 4.136 16 C -0.015 4.015 17 C -0.555 4.555 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.073 4.073 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.056 0.944 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.139 -1.953 -17.695 22.734 hybrid contribution -0.172 1.162 0.973 1.525 sum -14.311 -0.790 -16.722 22.024 Atomic orbital electron populations 1.22723 0.81438 1.02631 0.99739 1.87912 1.19204 1.27843 1.95329 1.22534 0.92849 0.84593 0.99771 1.21909 0.91670 0.95791 0.97130 1.22244 0.96280 0.99375 0.95505 1.22455 0.98018 0.94941 1.00398 1.22318 0.99065 0.97383 0.96096 1.22449 0.96605 0.95461 0.96033 0.90475 1.23099 0.99130 0.90984 0.95281 1.65605 1.27577 1.07401 1.22277 1.21967 0.98437 0.96759 0.86440 0.94748 1.21833 1.00664 0.94800 1.02452 1.21655 0.93480 0.98227 1.00256 1.19122 0.96143 0.97209 0.89013 1.21271 1.10160 1.30692 0.93418 0.92773 1.25019 0.97221 0.95818 0.96445 1.69968 1.40012 1.43283 1.00366 0.86621 0.83478 0.80199 0.77872 1.20756 1.21270 1.19866 1.23291 0.90251 0.98950 0.94816 0.89708 0.94336 0.94240 0.93303 0.93475 0.91411 0.92472 0.89837 0.92505 0.91272 0.92415 0.89664 0.94176 0.92314 0.91359 0.93993 0.92790 0.93525 0.97053 0.96276 0.93101 0.94365 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.31 10.22 -35.23 -0.36 -4.67 16 3 C 0.08 0.83 4.75 37.16 0.18 1.01 16 4 C -0.06 -0.74 0.78 -152.21 -0.12 -0.86 16 5 C -0.10 -1.07 5.61 -25.15 -0.14 -1.21 16 6 C -0.12 -1.33 6.56 -24.79 -0.16 -1.50 16 7 C -0.11 -1.18 6.30 -25.15 -0.16 -1.34 16 8 C -0.09 -0.98 3.55 -88.32 -0.31 -1.30 16 9 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 10 C 0.04 0.61 5.02 -2.23 -0.01 0.60 16 11 N -0.50 -7.75 4.53 -220.90 -1.00 -8.75 16 12 C 0.07 1.30 1.93 -67.71 -0.13 1.17 16 13 H 0.03 0.66 8.00 -51.93 -0.42 0.24 16 14 C -0.14 -2.41 8.82 37.16 0.33 -2.08 16 15 C -0.10 -2.09 4.68 -26.73 -0.13 -2.21 16 16 C 0.02 0.59 4.61 -27.88 -0.13 0.46 16 17 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.05 0.75 4.22 -1.43 -0.01 0.74 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.80 7.42 -51.93 -0.39 0.41 16 32 H 0.06 0.59 7.95 -51.93 -0.41 0.18 16 33 H 0.08 1.09 7.81 -51.93 -0.41 0.68 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.76 7.50 -51.93 -0.39 0.37 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.25 6.90 -51.93 -0.36 0.89 16 38 H 0.04 0.59 7.91 -51.93 -0.41 0.18 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.28 6.71 -51.93 -0.35 0.93 16 41 H 0.04 0.64 6.96 -51.93 -0.36 0.28 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.98 6.80 -51.93 -0.35 0.63 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.02 0.52 6.84 -51.93 -0.36 0.17 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.04 0.56 7.80 -51.93 -0.41 0.15 16 48 H 0.08 1.17 7.03 -51.93 -0.36 0.81 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -30.31 362.25 -9.42 -39.73 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -9.14 Total: -3.33 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.09 Total: -18.84 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: -0.27 Total: -35.31 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.36 Total: -4.67 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.31 -9.42 -39.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.411 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds