Wall clock time and date at job start Tue Mar 31 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47414 * 2 1 4 4 C 1.52997 * 109.47429 * 120.00303 * 2 1 3 5 5 C 1.52999 * 109.47236 * 183.86105 * 4 2 1 6 6 C 1.50711 * 109.46907 * 179.97438 * 5 4 2 7 7 H 1.07995 * 119.99716 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99806 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99885 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99902 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47081 * 60.00160 * 10 8 6 12 12 H 1.48497 * 109.46908 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47156 * 300.00088 * 10 8 6 14 14 N 1.46899 * 109.46911 * 239.99986 * 2 1 3 15 15 C 1.46816 * 111.00229 * 306.59084 * 14 2 1 16 16 C 1.53251 * 109.44969 * 189.19618 * 15 14 2 17 17 C 1.53216 * 108.63308 * 304.42733 * 16 15 14 18 18 C 1.52725 * 117.84772 * 196.97856 * 17 16 15 19 19 C 1.52761 * 117.78824 * 265.99142 * 17 16 15 20 20 H 1.09001 * 117.51007 * 359.66550 * 19 17 16 21 21 C 1.53008 * 117.50543 * 144.69927 * 19 17 16 22 22 C 1.53000 * 109.46758 * 184.99865 * 21 19 17 23 23 O 1.42906 * 109.46879 * 180.02562 * 22 21 19 24 24 C 1.53229 * 114.74803 * 51.37984 * 17 16 15 25 25 C 1.46807 * 111.00213 * 71.30093 * 14 2 1 26 26 H 1.08999 * 109.47041 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46775 * 299.99622 * 1 2 3 28 28 H 1.08997 * 109.47038 * 59.99837 * 1 2 3 29 29 H 1.09002 * 109.47086 * 303.85927 * 4 2 1 30 30 H 1.09002 * 109.47476 * 63.85552 * 4 2 1 31 31 H 1.08992 * 109.47294 * 299.99476 * 5 4 2 32 32 H 1.08995 * 109.47191 * 60.00213 * 5 4 2 33 33 H 0.96999 * 120.00439 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47170 * 309.18867 * 15 14 2 35 35 H 1.09003 * 109.47272 * 69.19952 * 15 14 2 36 36 H 1.08999 * 109.61411 * 184.68005 * 16 15 14 37 37 H 1.09007 * 109.61130 * 64.16682 * 16 15 14 38 38 H 1.08997 * 117.50755 * 215.21070 * 18 17 16 39 39 H 1.08998 * 117.50576 * 0.26890 * 18 17 16 40 40 H 1.08992 * 109.46723 * 304.99397 * 21 19 17 41 41 H 1.08997 * 109.47208 * 65.00031 * 21 19 17 42 42 H 1.09002 * 109.47160 * 299.99150 * 22 21 19 43 43 H 1.08990 * 109.47764 * 60.00173 * 22 21 19 44 44 H 0.96696 * 114.00015 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.60934 * 188.87896 * 24 17 16 46 46 H 1.09004 * 109.74731 * 68.45144 * 24 17 16 47 47 H 1.09004 * 109.47522 * 290.79756 * 25 14 2 48 48 H 1.09004 * 109.47359 * 50.80814 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5670 -0.6377 1.2986 6 6 4.0693 -1.3477 2.5295 7 1 3.3695 -1.8124 3.2082 8 6 5.4224 -1.4048 2.7884 9 7 6.2745 -0.8394 1.9616 10 14 6.0450 -2.2854 4.3136 11 1 5.6281 -3.7100 4.2675 12 1 7.5270 -2.2042 4.3616 13 1 5.4749 -1.6417 5.5243 14 7 2.0196 -0.6925 -1.1994 15 6 1.4247 -2.0298 -1.3147 16 6 2.1239 -2.8044 -2.4370 17 6 2.0355 -1.9831 -3.7274 18 6 2.3008 -2.7005 -5.0493 19 6 0.8775 -2.2756 -4.6798 20 1 0.1760 -3.0592 -4.3937 21 6 0.2728 -1.0940 -5.4409 22 6 -0.9428 -1.5699 -6.2389 23 8 -1.5073 -0.4664 -6.9502 24 6 2.5022 -0.5295 -3.5959 25 6 1.7807 0.1105 -2.4050 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.6214 -0.2490 2.1378 30 1 1.7343 -1.7670 1.2153 31 1 3.9857 -1.1100 0.4101 32 1 3.8727 0.4079 1.3326 33 1 7.2264 -0.8798 2.1435 34 1 1.5476 -2.5645 -0.3728 35 1 0.3631 -1.9367 -1.5440 36 1 1.6305 -3.7656 -2.5806 37 1 3.1702 -2.9629 -2.1753 38 1 2.8061 -2.1384 -5.8346 39 1 2.5357 -3.7640 -5.0065 40 1 -0.0358 -0.3253 -4.7326 41 1 1.0166 -0.6822 -6.1230 42 1 -0.6342 -2.3386 -6.9473 43 1 -1.6867 -1.9817 -5.5569 44 1 -2.2840 -0.6952 -7.4789 45 1 2.2593 0.0166 -4.5074 46 1 3.5790 -0.5021 -3.4290 47 1 0.7105 0.1518 -2.6080 48 1 2.1605 1.1204 -2.2500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:36 Heat of formation + Delta-G solvation = -48.290081 kcal Electronic energy + Delta-G solvation = -23136.769499 eV Core-core repulsion = 19998.267280 eV Total energy + Delta-G solvation = -3138.502219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.92469 -37.77186 -36.81171 -33.69100 -32.35666 -31.22654 -30.33664 -29.33542 -27.56672 -25.08836 -23.81744 -23.04849 -22.34154 -21.01857 -20.80490 -19.19005 -18.23618 -17.28265 -16.11586 -15.84813 -15.73027 -15.06045 -14.66112 -14.37950 -14.25744 -14.20647 -13.48033 -13.28110 -13.12258 -12.66538 -12.60707 -12.25835 -12.04534 -11.93552 -11.69351 -11.66601 -11.47852 -11.27734 -11.22995 -10.98310 -10.81413 -10.66950 -10.44016 -10.29367 -10.27013 -10.01828 -9.60553 -9.50339 -9.44788 -9.14622 -8.85080 -8.20219 -7.64214 -5.85590 -3.86914 3.39712 3.44059 3.46418 3.65484 3.92180 4.33905 4.55966 4.66934 4.75388 4.76440 4.96095 5.03306 5.07977 5.17508 5.35774 5.45055 5.49516 5.49892 5.54562 5.56710 5.67572 5.70879 5.76679 5.79976 5.81770 5.85783 5.89858 6.07580 6.10600 6.14846 6.18948 6.22210 6.32999 6.37987 6.44011 6.46734 6.59064 6.73709 6.93377 7.31865 7.34049 7.66311 7.69207 7.88091 8.11461 8.27014 8.60318 9.22157 9.75434 11.25291 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.003556 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.834810 B = 7871.103879 C = 8333.220141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.102 4.102 5 C 0.031 3.969 6 C -0.519 4.519 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.517 5.517 15 C 0.060 3.940 16 C -0.079 4.079 17 C -0.102 4.102 18 C -0.172 4.172 19 C -0.151 4.151 20 H 0.100 0.900 21 C -0.086 4.086 22 C 0.078 3.922 23 O -0.577 6.577 24 C -0.080 4.080 25 C 0.061 3.939 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.008 0.992 33 H 0.258 0.742 34 H 0.082 0.918 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.378 0.622 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.027 0.973 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.247 -2.014 -16.487 21.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.094 0.906 4 C -0.139 4.139 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.067 0.933 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.714 3.286 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.241 5.241 15 C -0.068 4.068 16 C -0.117 4.117 17 C -0.102 4.102 18 C -0.209 4.209 19 C -0.169 4.169 20 H 0.119 0.881 21 C -0.123 4.123 22 C 0.000 4.000 23 O -0.382 6.382 24 C -0.118 4.118 25 C -0.067 4.067 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.224 0.776 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.045 0.955 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.048 -1.721 -16.168 20.848 hybrid contribution -0.939 -0.784 0.500 1.321 sum -13.987 -2.505 -15.668 21.152 Atomic orbital electron populations 1.22499 0.98989 1.01550 1.01154 1.21855 0.90972 0.98467 0.91299 0.90634 1.21716 1.00826 0.98203 0.93186 1.18977 0.88021 0.96657 0.96940 1.21315 0.91650 1.34589 1.08223 0.93251 1.24987 0.97148 0.95819 0.96401 1.69967 1.02034 1.44731 1.36608 0.86764 0.77586 0.80281 0.83943 1.20416 1.21414 1.20450 1.61825 1.58635 1.02089 1.01538 1.22058 0.95052 0.90616 0.99066 1.21231 1.02319 0.96164 0.91952 1.21559 1.00736 0.96729 0.91189 1.23139 0.97968 1.00803 0.99007 1.22288 0.91310 0.99944 1.03388 0.88142 1.21048 0.96040 0.97168 0.98091 1.22199 0.95166 0.88283 0.94307 1.86482 1.49003 1.36636 1.66091 1.21217 1.01229 0.92100 0.97223 1.22016 0.97350 0.96983 0.90351 0.92719 0.92471 0.93610 0.93465 0.93439 0.94913 0.97361 0.93205 0.89960 0.95558 0.92105 0.90105 0.88942 0.88939 0.90903 0.91170 0.93677 0.93785 0.77570 0.91812 0.90392 0.95519 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.46 37.16 0.31 -2.32 16 2 C 0.08 1.43 2.31 -67.71 -0.16 1.27 16 3 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 4 C -0.10 -2.12 4.55 -26.73 -0.12 -2.24 16 5 C 0.03 0.82 4.85 -27.88 -0.14 0.68 16 6 C -0.52 -15.03 9.11 -34.43 -0.31 -15.34 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 10 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.52 -8.65 3.92 -226.48 -0.89 -9.54 16 15 C 0.06 0.91 4.45 -3.74 -0.02 0.90 16 16 C -0.08 -1.09 5.87 -26.49 -0.16 -1.24 16 17 C -0.10 -1.25 2.02 -154.54 -0.31 -1.56 16 18 C -0.17 -1.81 9.65 -26.84 -0.26 -2.07 16 19 C -0.15 -1.55 5.43 -90.71 -0.49 -2.05 16 20 H 0.10 0.99 8.07 -51.93 -0.42 0.57 16 21 C -0.09 -0.87 4.46 -26.73 -0.12 -0.99 16 22 C 0.08 0.67 7.01 37.16 0.26 0.93 16 23 O -0.58 -5.35 13.66 -35.23 -0.48 -5.84 16 24 C -0.08 -1.05 5.45 -26.49 -0.14 -1.19 16 25 C 0.06 0.88 5.11 -3.75 -0.02 0.86 16 26 H 0.05 0.77 6.53 -51.93 -0.34 0.43 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.61 6.94 -51.93 -0.36 0.25 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.98 6.24 -51.93 -0.32 0.65 16 31 H 0.03 0.92 7.72 -51.93 -0.40 0.52 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 34 H 0.08 1.38 6.07 -51.93 -0.32 1.07 16 35 H 0.03 0.38 6.77 -51.93 -0.35 0.02 16 36 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.82 7.65 -51.93 -0.40 0.42 16 41 H 0.07 0.73 7.49 -51.93 -0.39 0.34 16 42 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 1.69 9.12 45.56 0.42 2.11 16 45 H 0.06 0.74 6.60 -51.93 -0.34 0.40 16 46 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.03 0.37 6.68 -51.93 -0.35 0.02 16 48 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 LS Contribution 364.94 15.07 5.50 5.50 Total: -1.00 -31.84 364.94 -10.08 -41.91 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -8.15 Total: 0.40 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -1.77 Total: -22.77 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.15 Total: -36.31 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.48 Total: -5.84 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.84 -10.08 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.376 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds