Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47245 * 2 1 4 4 C 1.53005 * 109.46834 * 240.00208 * 2 1 3 5 5 C 1.53010 * 109.46785 * 176.86975 * 4 2 1 6 6 C 1.50697 * 109.47033 * 175.28389 * 5 4 2 7 7 H 1.07999 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99968 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99893 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47114 * 59.99326 * 10 8 6 12 12 H 1.48503 * 109.47015 * 299.99664 * 10 8 6 13 13 H 1.48493 * 109.47069 * 179.97438 * 10 8 6 14 14 N 1.46898 * 109.47284 * 120.00423 * 2 1 3 15 15 C 1.46809 * 111.00031 * 293.47091 * 14 2 1 16 16 C 1.53262 * 109.44647 * 189.19793 * 15 14 2 17 17 C 1.53208 * 108.62094 * 304.39320 * 16 15 14 18 18 C 1.52729 * 117.85350 * 197.00710 * 17 16 15 19 19 C 1.52759 * 117.80283 * 266.02396 * 17 16 15 20 20 H 1.09000 * 117.50627 * 359.66725 * 19 17 16 21 21 C 1.53007 * 117.50704 * 144.69975 * 19 17 16 22 22 C 1.52995 * 109.46857 * 185.00073 * 21 19 17 23 23 O 1.42907 * 109.46989 * 179.97438 * 22 21 19 24 24 C 1.53224 * 114.73021 * 51.42915 * 17 16 15 25 25 C 1.46808 * 111.00334 * 58.16245 * 14 2 1 26 26 H 1.08997 * 109.46955 * 299.99526 * 1 2 3 27 27 H 1.08993 * 109.47207 * 59.99880 * 1 2 3 28 28 H 1.08999 * 109.46772 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47290 * 56.87649 * 4 2 1 30 30 H 1.09000 * 109.47017 * 296.86598 * 4 2 1 31 31 H 1.09000 * 109.47000 * 55.28222 * 5 4 2 32 32 H 1.08995 * 109.46979 * 295.28481 * 5 4 2 33 33 H 0.96998 * 119.99850 * 0.02562 * 9 8 6 34 34 H 1.08998 * 109.47712 * 309.18987 * 15 14 2 35 35 H 1.09006 * 109.47514 * 69.20466 * 15 14 2 36 36 H 1.09005 * 109.61127 * 184.65855 * 16 15 14 37 37 H 1.09000 * 109.75407 * 64.22461 * 16 15 14 38 38 H 1.08996 * 117.50981 * 215.22711 * 18 17 16 39 39 H 1.09010 * 117.50046 * 0.28075 * 18 17 16 40 40 H 1.08997 * 109.46921 * 304.99822 * 21 19 17 41 41 H 1.09000 * 109.46581 * 65.00240 * 21 19 17 42 42 H 1.08997 * 109.47705 * 300.00133 * 22 21 19 43 43 H 1.09003 * 109.47633 * 59.99942 * 22 21 19 44 44 H 0.96702 * 113.99946 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.61386 * 188.83486 * 24 17 16 46 46 H 1.08992 * 109.75578 * 68.39252 * 24 17 16 47 47 H 1.09003 * 109.47399 * 290.79719 * 25 14 2 48 48 H 1.08995 * 109.47507 * 50.80968 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5681 -0.6534 -1.2893 6 6 4.0764 -1.4612 -2.4555 7 1 3.3794 -1.9722 -3.1031 8 6 5.4313 -1.5487 -2.6951 9 7 6.2802 -0.9268 -1.9062 10 14 6.0615 -2.5507 -4.1403 11 1 5.5085 -1.9994 -5.4034 12 1 5.6322 -3.9641 -3.9874 13 1 7.5444 -2.4847 -4.1792 14 7 2.0197 -0.6926 1.1994 15 6 1.6805 0.0571 2.4152 16 6 2.3983 -0.5674 3.6167 17 6 2.0266 -2.0519 3.6911 18 6 2.2890 -2.7882 5.0032 19 6 0.8555 -2.4491 4.5879 20 1 0.3473 -1.6542 5.1338 21 6 -0.0354 -3.6009 4.1180 22 6 -1.2127 -3.7609 5.0819 23 8 -2.0450 -4.8364 4.6428 24 6 2.2208 -2.8276 2.3841 25 6 1.5135 -2.0695 1.2554 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6317 -0.2408 -2.1383 30 1 1.7232 -1.7638 -1.2217 31 1 3.9741 -1.0582 -0.3623 32 1 3.8828 0.3841 -1.4013 33 1 5.9529 -0.4068 -1.1556 34 1 1.9958 1.0944 2.3024 35 1 0.6030 0.0202 2.5761 36 1 2.0844 -0.0654 4.5319 37 1 3.4767 -0.4658 3.4951 38 1 2.5973 -3.8319 4.9419 39 1 2.7241 -2.2165 5.8230 40 1 -0.4113 -3.3849 3.1180 41 1 0.5448 -4.5235 4.0968 42 1 -0.8369 -3.9769 6.0820 43 1 -1.7928 -2.8384 5.1033 44 1 -2.8131 -4.9956 5.2084 45 1 1.7892 -3.8237 2.4823 46 1 3.2840 -2.9101 2.1591 47 1 0.4401 -2.0546 1.4446 48 1 1.7083 -2.5672 0.3055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -51.674075 kcal Electronic energy + Delta-G solvation = -23280.722029 eV Core-core repulsion = 20142.073069 eV Total energy + Delta-G solvation = -3138.648960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.98416 -37.82972 -36.83502 -33.93362 -32.50889 -30.96197 -30.66001 -29.12553 -27.61141 -24.68367 -23.70548 -23.27811 -22.32120 -21.27106 -20.80467 -19.38850 -18.24724 -17.26554 -16.51028 -16.02860 -15.67020 -15.06491 -14.78142 -14.37777 -14.24511 -13.67360 -13.58041 -13.39644 -13.18178 -12.82238 -12.60461 -12.34355 -12.19166 -11.96627 -11.88391 -11.72166 -11.67950 -11.28595 -11.07233 -11.01170 -10.79922 -10.67910 -10.35007 -10.27990 -10.10209 -9.99967 -9.68687 -9.61949 -9.49003 -9.45472 -8.33967 -8.16729 -7.73431 -6.20083 -3.87216 3.50937 3.53344 3.62381 3.71835 3.91475 4.26758 4.64190 4.66097 4.71595 4.74524 4.94169 5.00569 5.03560 5.15634 5.27947 5.39990 5.47186 5.47857 5.50458 5.57122 5.62914 5.63535 5.72068 5.74363 5.77788 5.83031 5.89516 6.00052 6.04988 6.08996 6.14428 6.16969 6.26537 6.31529 6.34205 6.42268 6.54959 6.62391 6.81867 7.17961 7.33054 7.57337 7.58217 7.70788 7.90440 8.41627 8.65196 9.06938 9.84584 11.20927 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.003858 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.138596 B = 7255.106133 C = 7414.034161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.081 3.919 3 H 0.075 0.925 4 C -0.097 4.097 5 C 0.017 3.983 6 C -0.600 4.600 7 H 0.043 0.957 8 C 0.014 3.986 9 N -0.916 5.916 10 Si 1.065 2.935 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.284 1.284 14 N -0.519 5.519 15 C 0.060 3.940 16 C -0.077 4.077 17 C -0.104 4.104 18 C -0.172 4.172 19 C -0.149 4.149 20 H 0.100 0.900 21 C -0.088 4.088 22 C 0.079 3.921 23 O -0.576 6.576 24 C -0.081 4.081 25 C 0.059 3.941 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.026 0.974 32 H -0.002 1.002 33 H 0.270 0.730 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.378 0.622 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.027 0.973 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.783 -2.023 16.150 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.093 0.907 4 C -0.134 4.134 5 C -0.020 4.020 6 C -0.639 4.639 7 H 0.061 0.939 8 C -0.190 4.190 9 N -0.553 5.553 10 Si 0.894 3.106 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.209 1.209 14 N -0.243 5.243 15 C -0.068 4.068 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.209 4.209 19 C -0.168 4.168 20 H 0.118 0.882 21 C -0.125 4.125 22 C 0.001 3.999 23 O -0.381 6.381 24 C -0.118 4.118 25 C -0.069 4.069 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.016 0.984 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.224 0.776 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.045 0.955 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.432 -2.550 14.854 19.538 hybrid contribution -2.796 0.645 1.365 3.178 sum -15.229 -1.905 16.219 22.329 Atomic orbital electron populations 1.22487 0.98829 1.01658 1.01231 1.21854 0.91168 0.98414 0.91273 0.90710 1.21622 0.99978 0.98503 0.93326 1.19119 0.89720 0.95840 0.97356 1.22133 0.94231 1.33728 1.13794 0.93892 1.25746 0.93570 0.97851 1.01816 1.70747 1.37294 1.30635 1.16644 0.83607 0.76104 0.75728 0.75143 1.21675 1.21619 1.20900 1.61842 1.59576 1.01658 1.01189 1.22015 0.97041 0.97447 0.90306 1.21200 1.01496 0.91837 0.96952 1.21556 1.00898 0.96006 0.91913 1.23145 0.97965 1.01271 0.98505 1.22276 0.90000 1.00052 1.04436 0.88204 1.21059 0.94693 0.97577 0.99166 1.22187 0.91732 0.88860 0.97104 1.86497 1.41238 1.54345 1.56024 1.21232 1.02167 0.96851 0.91598 1.22091 0.95675 0.89715 0.99417 0.93463 0.92433 0.92691 0.93361 0.93061 0.95580 0.98366 0.91955 0.91220 0.95393 0.92096 0.90422 0.88817 0.89001 0.90826 0.91055 0.93696 0.93874 0.77583 0.91670 0.90304 0.95467 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 8.51 37.16 0.32 -2.33 16 2 C 0.08 1.41 2.35 -67.71 -0.16 1.25 16 3 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 4 C -0.10 -2.04 4.44 -26.72 -0.12 -2.16 16 5 C 0.02 0.44 4.22 -27.88 -0.12 0.32 16 6 C -0.60 -17.66 9.11 -34.44 -0.31 -17.97 16 7 H 0.04 1.25 7.74 -52.49 -0.41 0.84 16 8 C 0.01 0.40 5.46 -17.82 -0.10 0.31 16 9 N -0.92 -28.97 13.65 55.43 0.76 -28.22 16 10 Si 1.07 26.15 29.90 -169.99 -5.08 21.07 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 14 N -0.52 -8.66 3.85 -226.46 -0.87 -9.53 16 15 C 0.06 0.83 5.00 -3.74 -0.02 0.82 16 16 C -0.08 -0.97 5.87 -26.49 -0.16 -1.13 16 17 C -0.10 -1.27 2.02 -154.55 -0.31 -1.58 16 18 C -0.17 -1.81 9.65 -26.84 -0.26 -2.06 16 19 C -0.15 -1.54 5.43 -90.71 -0.49 -2.03 16 20 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 21 C -0.09 -0.92 4.46 -26.73 -0.12 -1.04 16 22 C 0.08 0.70 7.01 37.15 0.26 0.96 16 23 O -0.58 -5.58 13.66 -35.23 -0.48 -6.07 16 24 C -0.08 -1.16 5.45 -26.48 -0.14 -1.30 16 25 C 0.06 0.93 4.58 -3.74 -0.02 0.91 16 26 H 0.05 0.62 6.78 -51.93 -0.35 0.27 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.79 6.59 -51.93 -0.34 0.45 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.09 6.11 -51.93 -0.32 0.77 16 31 H 0.03 0.72 7.43 -51.93 -0.39 0.34 16 32 H 0.00 -0.05 8.01 -51.93 -0.42 -0.47 16 33 H 0.27 8.55 7.22 -40.82 -0.29 8.26 16 34 H 0.07 0.95 7.99 -51.93 -0.42 0.54 16 35 H 0.03 0.37 6.92 -51.93 -0.36 0.01 16 36 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 39 H 0.09 0.88 8.14 -51.92 -0.42 0.45 16 40 H 0.07 0.88 7.65 -51.93 -0.40 0.48 16 41 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 42 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.38 1.81 9.12 45.56 0.42 2.23 16 45 H 0.06 0.86 6.60 -51.93 -0.34 0.51 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.03 0.41 6.41 -51.93 -0.33 0.07 16 48 H 0.08 1.52 5.87 -51.93 -0.30 1.22 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -32.68 363.05 -10.02 -42.70 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.07 Total: 1.61 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -1.75 Total: -27.05 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.11 Total: -37.74 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.48 Total: -6.07 kcal Atomic # 14 Polarization: 26.15 SS G_CDS: -5.08 Total: 21.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.68 -10.02 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.975 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds