Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47245 * 2 1 4 4 C 1.53005 * 109.46834 * 240.00208 * 2 1 3 5 5 C 1.53010 * 109.46785 * 176.86975 * 4 2 1 6 6 C 1.50697 * 109.47033 * 175.28389 * 5 4 2 7 7 H 1.07999 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99968 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00037 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99893 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47114 * 59.99326 * 10 8 6 12 12 H 1.48503 * 109.47015 * 299.99664 * 10 8 6 13 13 H 1.48493 * 109.47069 * 179.97438 * 10 8 6 14 14 N 1.46898 * 109.47284 * 120.00423 * 2 1 3 15 15 C 1.46809 * 111.00031 * 293.47091 * 14 2 1 16 16 C 1.53262 * 109.44647 * 189.19793 * 15 14 2 17 17 C 1.53208 * 108.62094 * 304.39320 * 16 15 14 18 18 C 1.52729 * 117.85350 * 197.00710 * 17 16 15 19 19 C 1.52759 * 117.80283 * 266.02396 * 17 16 15 20 20 H 1.09000 * 117.50627 * 359.66725 * 19 17 16 21 21 C 1.53007 * 117.50704 * 144.69975 * 19 17 16 22 22 C 1.52995 * 109.46857 * 185.00073 * 21 19 17 23 23 O 1.42907 * 109.46989 * 179.97438 * 22 21 19 24 24 C 1.53224 * 114.73021 * 51.42915 * 17 16 15 25 25 C 1.46808 * 111.00334 * 58.16245 * 14 2 1 26 26 H 1.08997 * 109.46955 * 299.99526 * 1 2 3 27 27 H 1.08993 * 109.47207 * 59.99880 * 1 2 3 28 28 H 1.08999 * 109.46772 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47290 * 56.87649 * 4 2 1 30 30 H 1.09000 * 109.47017 * 296.86598 * 4 2 1 31 31 H 1.09000 * 109.47000 * 55.28222 * 5 4 2 32 32 H 1.08995 * 109.46979 * 295.28481 * 5 4 2 33 33 H 0.96998 * 119.99850 * 0.02562 * 9 8 6 34 34 H 1.08998 * 109.47712 * 309.18987 * 15 14 2 35 35 H 1.09006 * 109.47514 * 69.20466 * 15 14 2 36 36 H 1.09005 * 109.61127 * 184.65855 * 16 15 14 37 37 H 1.09000 * 109.75407 * 64.22461 * 16 15 14 38 38 H 1.08996 * 117.50981 * 215.22711 * 18 17 16 39 39 H 1.09010 * 117.50046 * 0.28075 * 18 17 16 40 40 H 1.08997 * 109.46921 * 304.99822 * 21 19 17 41 41 H 1.09000 * 109.46581 * 65.00240 * 21 19 17 42 42 H 1.08997 * 109.47705 * 300.00133 * 22 21 19 43 43 H 1.09003 * 109.47633 * 59.99942 * 22 21 19 44 44 H 0.96702 * 113.99946 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.61386 * 188.83486 * 24 17 16 46 46 H 1.08992 * 109.75578 * 68.39252 * 24 17 16 47 47 H 1.09003 * 109.47399 * 290.79719 * 25 14 2 48 48 H 1.08995 * 109.47507 * 50.80968 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5681 -0.6534 -1.2893 6 6 4.0764 -1.4612 -2.4555 7 1 3.3794 -1.9722 -3.1031 8 6 5.4313 -1.5487 -2.6951 9 7 6.2802 -0.9268 -1.9062 10 14 6.0615 -2.5507 -4.1403 11 1 5.5085 -1.9994 -5.4034 12 1 5.6322 -3.9641 -3.9874 13 1 7.5444 -2.4847 -4.1792 14 7 2.0197 -0.6926 1.1994 15 6 1.6805 0.0571 2.4152 16 6 2.3983 -0.5674 3.6167 17 6 2.0266 -2.0519 3.6911 18 6 2.2890 -2.7882 5.0032 19 6 0.8555 -2.4491 4.5879 20 1 0.3473 -1.6542 5.1338 21 6 -0.0354 -3.6009 4.1180 22 6 -1.2127 -3.7609 5.0819 23 8 -2.0450 -4.8364 4.6428 24 6 2.2208 -2.8276 2.3841 25 6 1.5135 -2.0695 1.2554 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6317 -0.2408 -2.1383 30 1 1.7232 -1.7638 -1.2217 31 1 3.9741 -1.0582 -0.3623 32 1 3.8828 0.3841 -1.4013 33 1 5.9529 -0.4068 -1.1556 34 1 1.9958 1.0944 2.3024 35 1 0.6030 0.0202 2.5761 36 1 2.0844 -0.0654 4.5319 37 1 3.4767 -0.4658 3.4951 38 1 2.5973 -3.8319 4.9419 39 1 2.7241 -2.2165 5.8230 40 1 -0.4113 -3.3849 3.1180 41 1 0.5448 -4.5235 4.0968 42 1 -0.8369 -3.9769 6.0820 43 1 -1.7928 -2.8384 5.1033 44 1 -2.8131 -4.9956 5.2084 45 1 1.7892 -3.8237 2.4823 46 1 3.2840 -2.9101 2.1591 47 1 0.4401 -2.0546 1.4446 48 1 1.7083 -2.5672 0.3055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172496340.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -72.784178 kcal Electronic energy + Delta-G solvation = -23281.637432 eV Core-core repulsion = 20142.073069 eV Total energy + Delta-G solvation = -3139.564363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.06690 -38.94409 -37.62437 -35.86562 -34.06975 -32.08273 -31.84085 -30.69672 -28.73739 -26.66704 -24.63727 -24.38465 -23.82391 -22.86459 -21.69066 -20.75595 -19.24672 -18.78908 -18.03365 -17.31862 -16.45244 -16.15447 -15.89270 -15.63709 -15.55105 -15.22916 -15.01615 -14.70344 -14.51828 -14.13286 -14.04251 -13.67989 -13.53817 -13.25941 -13.06668 -12.84382 -12.80546 -12.60177 -12.49317 -12.20602 -12.09830 -11.98012 -11.92675 -11.71030 -11.62416 -11.52061 -11.14966 -10.93527 -10.61322 -10.51602 -10.47443 -10.40733 -9.00218 -8.62692 -6.31615 1.51155 1.60577 1.79657 2.59176 2.73644 3.03908 3.21833 3.23841 3.69745 3.79275 3.90600 3.94161 4.00128 4.16621 4.22372 4.27714 4.30569 4.34515 4.39314 4.48865 4.54013 4.59104 4.62642 4.64045 4.71566 4.79833 4.87708 4.88257 4.91315 4.97123 4.98488 5.03380 5.11557 5.13145 5.18120 5.18309 5.28956 5.32301 5.40116 5.41455 5.52951 5.70027 6.09299 6.26581 6.29599 6.38322 6.66819 6.90426 7.50393 8.77646 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019080 B = 0.003858 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.138596 B = 7255.106133 C = 7414.034161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.086 3.914 3 H 0.068 0.932 4 C -0.086 4.086 5 C 0.026 3.974 6 C -0.619 4.619 7 H 0.044 0.956 8 C -0.041 4.041 9 N -0.939 5.939 10 Si 1.116 2.884 11 H -0.269 1.269 12 H -0.271 1.271 13 H -0.283 1.283 14 N -0.544 5.544 15 C 0.061 3.939 16 C -0.072 4.072 17 C -0.124 4.124 18 C -0.164 4.164 19 C -0.127 4.127 20 H 0.120 0.880 21 C -0.089 4.089 22 C 0.081 3.919 23 O -0.600 6.600 24 C -0.076 4.076 25 C 0.066 3.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.003 0.997 32 H -0.027 1.027 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.398 0.602 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.708 -2.275 17.327 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 H 0.086 0.914 4 C -0.124 4.124 5 C -0.011 4.011 6 C -0.657 4.657 7 H 0.062 0.938 8 C -0.238 4.238 9 N -0.577 5.577 10 Si 0.937 3.063 11 H -0.194 1.194 12 H -0.196 1.196 13 H -0.208 1.208 14 N -0.269 5.269 15 C -0.066 4.066 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.201 4.201 19 C -0.146 4.146 20 H 0.138 0.862 21 C -0.127 4.127 22 C 0.003 3.997 23 O -0.409 6.409 24 C -0.114 4.114 25 C -0.062 4.062 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.021 0.979 32 H -0.009 1.009 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.247 0.753 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.398 -2.796 16.057 21.747 hybrid contribution -2.197 0.710 1.015 2.522 sum -16.595 -2.086 17.072 23.900 Atomic orbital electron populations 1.22338 0.95893 1.02083 1.02638 1.21659 0.93380 0.97249 0.89917 0.91416 1.21455 0.96151 0.99050 0.95762 1.18954 0.93386 0.93470 0.95311 1.22590 0.94722 1.33842 1.14555 0.93772 1.27397 0.94349 0.98178 1.03889 1.70892 1.37697 1.31951 1.17125 0.82968 0.75647 0.75204 0.72489 1.19438 1.19589 1.20821 1.61775 1.60664 1.02293 1.02130 1.22077 0.98099 0.97099 0.89371 1.21164 0.99970 0.92316 0.97548 1.21430 1.03844 0.95675 0.91499 1.23211 0.98279 1.01128 0.97459 1.22284 0.89582 1.00039 1.02647 0.86240 1.21044 0.95469 0.97165 0.98978 1.22171 0.91192 0.89328 0.96970 1.86441 1.42429 1.54698 1.57298 1.21117 0.99826 0.97657 0.92798 1.21967 0.96547 0.89267 0.98386 0.91435 0.91634 0.92686 0.93274 0.93369 0.97873 1.00881 0.93618 0.91224 0.93804 0.89209 0.92736 0.89020 0.87452 0.92460 0.92145 0.92235 0.92539 0.75259 0.90871 0.93650 0.94023 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.62 8.51 71.98 0.61 -4.01 16 2 C 0.09 3.00 2.35 44.92 0.11 3.11 16 3 H 0.07 2.44 8.01 -2.39 -0.02 2.42 16 4 C -0.09 -3.75 4.44 30.60 0.14 -3.61 16 5 C 0.03 1.43 4.22 29.85 0.13 1.55 16 6 C -0.62 -37.37 9.11 25.60 0.23 -37.14 16 7 H 0.04 2.59 7.74 -2.91 -0.02 2.57 16 8 C -0.04 -2.51 5.46 84.65 0.46 -2.05 16 9 N -0.94 -61.14 13.65 21.45 0.29 -60.85 16 10 Si 1.12 52.65 29.90 68.60 2.05 54.71 16 11 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 14 N -0.54 -18.41 3.85 -870.39 -3.35 -21.76 16 15 C 0.06 1.62 5.00 86.41 0.43 2.05 16 16 C -0.07 -1.73 5.87 30.75 0.18 -1.55 16 17 C -0.12 -2.90 2.02 -52.21 -0.11 -3.01 16 18 C -0.16 -3.11 9.65 30.52 0.29 -2.82 16 19 C -0.13 -2.28 5.43 -10.85 -0.06 -2.34 16 20 H 0.12 1.74 8.07 -2.39 -0.02 1.73 16 21 C -0.09 -1.71 4.46 30.59 0.14 -1.57 16 22 C 0.08 1.21 7.01 71.98 0.50 1.71 16 23 O -0.60 -10.36 13.66 -148.98 -2.04 -12.40 16 24 C -0.08 -2.25 5.45 30.76 0.17 -2.08 16 25 C 0.07 2.12 4.58 86.41 0.40 2.52 16 26 H 0.07 1.57 6.78 -2.39 -0.02 1.56 16 27 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 1.49 6.59 -2.39 -0.02 1.48 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.11 6.11 -2.39 -0.01 2.09 16 31 H 0.00 0.17 7.43 -2.39 -0.02 0.16 16 32 H -0.03 -1.61 8.01 -2.39 -0.02 -1.63 16 33 H 0.25 16.92 7.22 -92.71 -0.67 16.25 16 34 H 0.07 1.83 7.99 -2.39 -0.02 1.81 16 35 H 0.04 1.04 6.92 -2.38 -0.02 1.02 16 36 H 0.09 1.63 8.08 -2.38 -0.02 1.61 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.78 8.03 -2.39 -0.02 1.77 16 39 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.06 1.29 7.65 -2.39 -0.02 1.27 16 41 H 0.06 1.28 7.49 -2.39 -0.02 1.26 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.40 2.89 9.12 -74.06 -0.68 2.22 16 45 H 0.07 1.98 6.60 -2.39 -0.02 1.96 16 46 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.04 1.21 6.41 -2.39 -0.02 1.19 16 48 H 0.05 2.03 5.87 -2.39 -0.01 2.01 16 Total: -1.00 -72.56 363.05 0.92 -71.63 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.34 Total: 17.90 kcal Atomic # 6 Polarization: -52.86 SS G_CDS: 3.62 Total: -49.23 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.06 Total: -82.61 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -2.04 Total: -12.40 kcal Atomic # 14 Polarization: 52.65 SS G_CDS: 2.05 Total: 54.71 kcal Total: -72.56 0.92 -71.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496340.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.151 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds