Wall clock time and date at job start Tue Mar 31 2020 05:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47186 * 2 1 4 4 C 1.53002 * 109.46625 * 239.99643 * 2 1 3 5 5 C 1.53006 * 109.46689 * 176.87393 * 4 2 1 6 6 C 1.50694 * 109.46996 * 175.28180 * 5 4 2 7 7 H 1.07999 * 120.00013 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99920 * 179.72745 * 6 5 4 9 9 N 1.31521 * 119.99983 * 180.27816 * 8 6 5 10 10 Si 1.86800 * 119.99962 * 0.27256 * 8 6 5 11 11 H 1.48500 * 109.47083 * 90.00251 * 10 8 6 12 12 H 1.48501 * 109.46879 * 210.00090 * 10 8 6 13 13 H 1.48493 * 109.47041 * 330.00175 * 10 8 6 14 14 N 1.46901 * 109.46667 * 120.00053 * 2 1 3 15 15 C 1.46805 * 110.99841 * 293.44795 * 14 2 1 16 16 C 1.53267 * 109.44657 * 189.19792 * 15 14 2 17 17 C 1.53210 * 108.63125 * 304.42884 * 16 15 14 18 18 C 1.52760 * 117.79163 * 265.98791 * 17 16 15 19 19 C 1.52727 * 117.84603 * 196.97499 * 17 16 15 20 20 H 1.09001 * 117.50298 * 0.27123 * 19 17 16 21 21 C 1.52994 * 117.50603 * 215.21398 * 19 17 16 22 22 C 1.53002 * 109.47177 * 174.99986 * 21 19 17 23 23 O 1.42898 * 109.47070 * 180.02562 * 22 21 19 24 24 C 1.53233 * 114.74956 * 51.38540 * 17 16 15 25 25 C 1.46804 * 111.00328 * 58.16209 * 14 2 1 26 26 H 1.09004 * 109.47196 * 300.00178 * 1 2 3 27 27 H 1.09002 * 109.47116 * 60.00108 * 1 2 3 28 28 H 1.08993 * 109.47604 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47076 * 56.87971 * 4 2 1 30 30 H 1.08998 * 109.47515 * 296.87278 * 4 2 1 31 31 H 1.08998 * 109.46891 * 55.28362 * 5 4 2 32 32 H 1.09000 * 109.47129 * 295.28293 * 5 4 2 33 33 H 0.96998 * 120.00087 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.48164 * 309.19248 * 15 14 2 35 35 H 1.09006 * 109.47522 * 69.20973 * 15 14 2 36 36 H 1.08996 * 109.60721 * 184.68198 * 16 15 14 37 37 H 1.08997 * 109.74650 * 64.26017 * 16 15 14 38 38 H 1.09005 * 117.50815 * 359.63373 * 18 17 16 39 39 H 1.09000 * 117.50875 * 144.69826 * 18 17 16 40 40 H 1.08999 * 109.47622 * 295.00542 * 21 19 17 41 41 H 1.09006 * 109.46954 * 55.00506 * 21 19 17 42 42 H 1.08992 * 109.47431 * 300.00389 * 22 21 19 43 43 H 1.09006 * 109.46754 * 60.00398 * 22 21 19 44 44 H 0.96702 * 114.00375 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.60791 * 188.87749 * 24 17 16 46 46 H 1.08996 * 109.75256 * 68.44153 * 24 17 16 47 47 H 1.09004 * 109.47632 * 290.79365 * 25 14 2 48 48 H 1.09000 * 109.47797 * 50.80612 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 3.5679 -0.6536 -1.2892 6 6 4.0762 -1.4616 -2.4553 7 1 3.3792 -1.9727 -3.1028 8 6 5.4308 -1.5442 -2.6985 9 7 5.8742 -2.2448 -3.7194 10 14 6.6365 -0.6607 -1.5780 11 1 7.0328 -1.5635 -0.4675 12 1 7.8413 -0.2732 -2.3549 13 1 5.9938 0.5566 -1.0211 14 7 2.0196 -0.6925 1.1995 15 6 1.6807 0.0575 2.4151 16 6 2.3984 -0.5670 3.6167 17 6 2.0271 -2.0516 3.6913 18 6 0.8563 -2.4488 4.5886 19 6 2.2901 -2.7878 5.0033 20 1 2.7256 -2.2160 5.8227 21 6 2.7229 -4.2527 4.9170 22 6 3.0550 -4.7697 6.3182 23 8 3.4599 -6.1378 6.2376 24 6 2.2204 -2.8276 2.3842 25 6 1.5133 -2.0694 1.2556 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6316 -0.2409 -2.1383 30 1 1.7231 -1.7639 -1.2216 31 1 3.9739 -1.0584 -0.3622 32 1 3.8828 0.3839 -1.4013 33 1 6.8271 -2.3027 -3.8907 34 1 1.9963 1.0947 2.3022 35 1 0.6032 0.0210 2.5762 36 1 2.0844 -0.0649 4.5318 37 1 3.4768 -0.4652 3.4953 38 1 0.3487 -1.6539 5.1352 39 1 0.2215 -3.2694 4.2543 40 1 1.9132 -4.8465 4.4931 41 1 3.6046 -4.3342 4.2813 42 1 3.8648 -4.1759 6.7422 43 1 2.1733 -4.6882 6.9540 44 1 3.6866 -6.5319 7.0911 45 1 1.7883 -3.8235 2.4827 46 1 3.2836 -2.9107 2.1590 47 1 0.4399 -2.0545 1.4447 48 1 1.7081 -2.5672 0.3057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172496344.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:43 Heat of formation + Delta-G solvation = -45.221253 kcal Electronic energy + Delta-G solvation = -23129.724657 eV Core-core repulsion = 19991.355513 eV Total energy + Delta-G solvation = -3138.369145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96333 -37.88953 -36.81452 -33.82592 -32.39781 -30.89536 -30.77534 -29.63482 -27.66094 -25.34359 -23.81400 -23.06717 -22.69497 -20.91117 -20.35829 -19.40106 -18.12718 -17.39023 -16.56704 -16.07581 -15.67567 -15.06963 -14.64867 -14.48962 -14.18709 -14.05805 -13.74832 -13.39636 -13.05402 -12.88277 -12.54170 -12.37599 -12.25712 -11.98577 -11.89523 -11.74815 -11.68610 -11.42711 -11.29718 -11.06720 -10.84686 -10.73314 -10.43903 -10.24594 -10.11814 -9.84918 -9.72835 -9.55333 -9.46933 -9.35966 -8.96866 -8.40051 -7.79428 -5.92002 -3.87962 3.42318 3.48342 3.55350 3.60984 3.92827 4.22157 4.58418 4.62865 4.72371 4.74970 4.94854 4.96680 5.02843 5.17251 5.24727 5.38079 5.43353 5.44120 5.46013 5.50691 5.60058 5.61356 5.69354 5.72960 5.74382 5.82181 5.93007 5.96406 6.02107 6.04377 6.10939 6.18557 6.23954 6.29060 6.30578 6.39630 6.50685 6.59104 6.76965 7.11379 7.36860 7.49902 7.52796 7.60158 7.75142 7.96915 8.68051 9.14108 9.72482 11.21877 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.004674 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.778125 B = 5988.670792 C = 7231.992866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.080 3.920 3 H 0.076 0.924 4 C -0.096 4.096 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.265 1.265 14 N -0.522 5.522 15 C 0.060 3.940 16 C -0.078 4.078 17 C -0.105 4.105 18 C -0.173 4.173 19 C -0.147 4.147 20 H 0.102 0.898 21 C -0.089 4.089 22 C 0.079 3.921 23 O -0.575 6.575 24 C -0.079 4.079 25 C 0.057 3.943 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.008 0.992 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.030 0.970 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.378 0.622 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.028 0.972 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 0.437 21.372 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.029 4.029 3 H 0.094 0.906 4 C -0.133 4.133 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.709 3.291 11 H -0.204 1.204 12 H -0.219 1.219 13 H -0.189 1.189 14 N -0.246 5.246 15 C -0.068 4.068 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.210 4.210 19 C -0.165 4.165 20 H 0.120 0.880 21 C -0.126 4.126 22 C 0.001 3.999 23 O -0.381 6.381 24 C -0.117 4.117 25 C -0.071 4.071 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.224 0.776 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.046 0.954 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.884 0.474 20.608 22.861 hybrid contribution -0.099 0.422 1.227 1.302 sum -9.983 0.897 21.835 24.026 Atomic orbital electron populations 1.22481 0.98679 1.01751 1.01294 1.21874 0.91363 0.98433 0.91186 0.90600 1.21577 0.99212 0.98982 0.93551 1.19479 0.91192 0.96354 0.97401 1.21251 0.92545 1.30142 1.11482 0.91472 1.25014 0.98446 0.95038 0.95060 1.69933 1.14131 1.41743 1.29158 0.86750 0.80481 0.81001 0.80875 1.20383 1.21861 1.18932 1.61853 1.59692 1.01787 1.01295 1.22012 0.97175 0.97399 0.90217 1.21199 1.01397 0.91879 0.97045 1.21576 1.01661 0.95745 0.91515 1.23191 0.90781 1.03232 1.03828 1.22223 0.99247 0.95808 0.99235 0.88031 1.21046 1.02406 0.93113 0.96020 1.22185 0.97810 0.82106 0.97796 1.86500 1.89749 1.26250 1.35567 1.21219 1.02181 0.96738 0.91544 1.22119 0.95792 0.89613 0.99587 0.93477 0.92323 0.92611 0.92830 0.92632 0.95331 0.97381 0.92995 0.91188 0.95235 0.92072 0.90608 0.89231 0.89006 0.91124 0.90521 0.93756 0.93812 0.77587 0.91735 0.90311 0.95366 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 8.52 37.16 0.32 -2.15 16 2 C 0.08 1.29 2.35 -67.71 -0.16 1.13 16 3 H 0.08 1.24 8.01 -51.93 -0.42 0.83 16 4 C -0.10 -1.90 4.44 -26.73 -0.12 -2.02 16 5 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 6 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 7 H 0.07 2.10 7.99 -52.49 -0.42 1.69 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 10 Si 0.88 22.70 27.47 -169.99 -4.67 18.03 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 13 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 14 N -0.52 -8.17 3.85 -226.47 -0.87 -9.04 16 15 C 0.06 0.78 5.00 -3.74 -0.02 0.76 16 16 C -0.08 -0.91 5.87 -26.48 -0.16 -1.07 16 17 C -0.10 -1.22 2.02 -154.54 -0.31 -1.53 16 18 C -0.17 -1.71 9.57 -26.82 -0.26 -1.97 16 19 C -0.15 -1.47 5.47 -90.73 -0.50 -1.97 16 20 H 0.10 0.93 8.07 -51.93 -0.42 0.51 16 21 C -0.09 -0.93 4.73 -26.73 -0.13 -1.05 16 22 C 0.08 0.70 7.01 37.16 0.26 0.96 16 23 O -0.58 -5.71 13.66 -35.23 -0.48 -6.19 16 24 C -0.08 -1.08 5.11 -26.48 -0.14 -1.21 16 25 C 0.06 0.84 4.58 -3.75 -0.02 0.82 16 26 H 0.05 0.58 6.78 -51.93 -0.35 0.22 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.75 6.58 -51.93 -0.34 0.41 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.12 6.11 -51.93 -0.32 0.80 16 31 H 0.03 0.71 7.00 -51.93 -0.36 0.35 16 32 H 0.01 0.20 7.19 -51.93 -0.37 -0.18 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.07 0.88 7.99 -51.93 -0.42 0.47 16 35 H 0.03 0.37 6.92 -51.93 -0.36 0.01 16 36 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 40 H 0.07 0.77 7.57 -51.93 -0.39 0.38 16 41 H 0.08 0.92 8.03 -51.93 -0.42 0.51 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 1.90 9.12 45.56 0.42 2.31 16 45 H 0.06 0.81 7.31 -51.93 -0.38 0.43 16 46 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.03 0.39 6.79 -51.93 -0.35 0.04 16 48 H 0.09 1.48 5.87 -51.93 -0.30 1.18 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -32.61 362.19 -9.72 -42.33 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.17 Total: 0.65 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -1.76 Total: -23.15 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.10 Total: -37.13 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.48 Total: -6.19 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.67 Total: 18.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.61 -9.72 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172496344.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.893 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds