Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47225 * 2 1 4 4 C 1.53006 * 109.47092 * 119.99621 * 2 1 3 5 5 C 1.53000 * 109.47249 * 184.05153 * 4 2 1 6 6 C 1.50697 * 109.47042 * 175.93304 * 5 4 2 7 7 H 1.08000 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99713 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99855 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47250 * 89.99728 * 10 8 6 12 12 H 1.48497 * 109.47001 * 209.99960 * 10 8 6 13 13 H 1.48503 * 109.47033 * 329.99885 * 10 8 6 14 14 N 1.46900 * 109.47480 * 239.99543 * 2 1 3 15 15 C 1.47109 * 111.06181 * 72.09744 * 14 2 1 16 16 C 1.53098 * 109.31175 * 177.65324 * 15 14 2 17 17 O 1.43024 * 109.25289 * 56.83698 * 16 15 14 18 18 C 1.42985 * 113.71306 * 301.36065 * 17 16 15 19 19 C 1.52953 * 109.50594 * 178.67931 * 18 17 16 20 20 C 1.53008 * 109.47477 * 60.10816 * 19 18 17 21 21 C 1.53003 * 109.47489 * 59.93947 * 20 19 18 22 22 C 1.53001 * 109.48084 * 299.99943 * 21 20 19 23 23 C 1.52980 * 109.46301 * 298.77352 * 18 17 16 24 24 C 1.47025 * 111.00238 * 308.49150 * 14 2 1 25 25 H 1.08998 * 109.47463 * 60.00176 * 1 2 3 26 26 H 1.09001 * 109.47225 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47697 * 300.00077 * 1 2 3 28 28 H 1.09000 * 109.47246 * 304.05674 * 4 2 1 29 29 H 1.09003 * 109.46973 * 64.05301 * 4 2 1 30 30 H 1.09003 * 109.47447 * 295.93616 * 5 4 2 31 31 H 1.09006 * 109.46820 * 55.93200 * 5 4 2 32 32 H 0.97006 * 119.99458 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.48986 * 57.70269 * 15 14 2 34 34 H 1.08998 * 109.51831 * 297.62011 * 15 14 2 35 35 H 1.08998 * 109.51219 * 296.90217 * 16 15 14 36 36 H 1.09006 * 109.54546 * 176.79235 * 16 15 14 37 37 H 1.09004 * 109.46551 * 180.11104 * 19 18 17 38 38 H 1.08995 * 109.47009 * 300.10143 * 19 18 17 39 39 H 1.09000 * 109.46818 * 299.93926 * 20 19 18 40 40 H 1.08994 * 109.47140 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.46486 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.46605 * 60.00143 * 21 20 19 43 43 H 1.09003 * 109.47777 * 300.02202 * 22 21 20 44 44 H 1.09000 * 109.47843 * 180.02562 * 22 21 20 45 45 H 1.09005 * 109.46781 * 59.88827 * 23 18 17 46 46 H 1.09005 * 109.46987 * 179.88629 * 23 18 17 47 47 H 1.09001 * 109.51267 * 62.41379 * 24 14 2 48 48 H 1.08999 * 109.50446 * 302.32226 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5666 -0.6336 1.3014 6 6 4.0621 -1.2561 2.5811 7 1 3.3586 -1.6731 3.2866 8 6 5.4137 -1.2935 2.8513 9 7 6.2703 -0.7854 1.9925 10 14 6.0281 -2.0659 4.4373 11 1 6.2846 -3.5118 4.2168 12 1 7.2861 -1.3984 4.8580 13 1 5.0018 -1.9014 5.4980 14 7 2.0197 -0.6926 -1.1993 15 6 1.7981 0.1191 -2.4061 16 6 2.3744 -0.6125 -3.6212 17 8 1.7733 -1.9064 -3.7215 18 6 1.9705 -2.7233 -2.5647 19 6 1.2639 -4.0656 -2.7608 20 6 1.8447 -4.7734 -3.9867 21 6 3.3419 -5.0096 -3.7777 22 6 4.0479 -3.6664 -3.5825 23 6 3.4676 -2.9589 -2.3562 24 6 1.3900 -2.0138 -1.3390 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6185 -0.2510 2.1378 29 1 1.7371 -1.7677 1.2138 30 1 3.9904 -1.1664 0.4501 31 1 3.8719 0.4122 1.2640 32 1 7.2211 -0.8120 2.1824 33 1 2.2945 1.0828 -2.2924 34 1 0.7288 0.2751 -2.5487 35 1 3.4527 -0.7202 -3.5037 36 1 2.1621 -0.0415 -4.5252 37 1 1.4130 -4.6870 -1.8778 38 1 0.1976 -3.8964 -2.9101 39 1 1.6946 -4.1524 -4.8698 40 1 1.3415 -5.7301 -4.1262 41 1 3.7553 -5.5142 -4.6509 42 1 3.4918 -5.6306 -2.8946 43 1 3.8977 -3.0450 -4.4654 44 1 5.1146 -3.8346 -3.4340 45 1 3.9701 -2.0016 -2.2172 46 1 3.6182 -3.5800 -1.4732 47 1 0.3139 -1.8928 -1.4640 48 1 1.5883 -2.6076 -0.4467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -68.554751 kcal Electronic energy + Delta-G solvation = -24351.470659 eV Core-core repulsion = 21212.089698 eV Total energy + Delta-G solvation = -3139.380961 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42767 -37.52772 -35.78518 -33.30866 -31.62719 -31.55830 -30.52061 -29.19065 -27.45892 -25.40804 -24.91457 -22.93589 -22.29369 -21.37068 -20.36964 -19.15945 -18.75618 -16.51197 -16.12907 -15.79093 -15.13196 -14.80251 -14.53132 -14.47672 -14.34501 -14.02132 -13.60639 -13.22817 -13.03330 -12.75197 -12.27252 -12.24048 -11.97682 -11.90768 -11.74099 -11.61965 -11.44956 -11.21919 -11.04294 -10.88996 -10.85537 -10.67257 -10.45356 -10.36394 -10.16012 -10.08806 -9.67838 -9.56436 -9.23778 -9.14862 -8.88015 -8.24352 -7.77652 -5.89705 -3.90965 3.35834 3.42228 3.45250 3.92685 4.16474 4.52833 4.83824 4.91832 4.95874 5.17575 5.23784 5.28494 5.32742 5.43180 5.45563 5.46237 5.57375 5.60531 5.65623 5.68303 5.71407 5.80317 5.80582 5.90626 5.92456 5.99750 6.05077 6.13939 6.20006 6.23312 6.27312 6.33436 6.35988 6.39149 6.43709 6.61836 6.67871 6.77113 6.84585 7.27284 7.41082 7.50991 7.52366 7.83886 8.05681 8.20594 8.55981 9.17825 9.71784 11.21093 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.005555 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.053564 B = 5039.378920 C = 5998.538340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.077 0.923 4 C -0.101 4.101 5 C 0.032 3.968 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.275 1.275 14 N -0.512 5.512 15 C 0.017 3.983 16 C 0.062 3.938 17 O -0.376 6.376 18 C 0.126 3.874 19 C -0.103 4.103 20 C -0.112 4.112 21 C -0.119 4.119 22 C -0.115 4.115 23 C -0.135 4.135 24 C 0.030 3.970 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 -3.389 -12.781 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.027 4.027 3 H 0.095 0.905 4 C -0.139 4.139 5 C -0.005 4.005 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.713 3.287 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.201 1.201 14 N -0.235 5.235 15 C -0.111 4.111 16 C -0.015 4.015 17 O -0.295 6.295 18 C 0.087 3.913 19 C -0.141 4.141 20 C -0.150 4.150 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.172 4.172 24 C -0.098 4.098 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.056 0.944 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.438 -3.483 -12.907 16.364 hybrid contribution -0.317 -0.055 1.146 1.190 sum -9.755 -3.538 -11.762 15.685 Atomic orbital electron populations 1.22491 0.98828 1.01682 1.01273 1.21900 0.91141 0.98491 0.91149 0.90476 1.21702 1.00879 0.98161 0.93129 1.18969 0.87941 0.96821 0.96736 1.21339 0.91699 1.37905 1.04820 0.93188 1.24982 0.97122 0.95723 0.96464 1.69978 1.01906 1.45927 1.35468 0.86711 0.78268 0.79412 0.84273 1.20807 1.21347 1.20050 1.62375 1.57292 1.02256 1.01616 1.22775 0.99085 0.97792 0.91477 1.22613 0.98019 0.83844 0.97018 1.87930 1.76709 1.25538 1.39343 1.21466 0.95247 0.89976 0.84642 1.21494 0.99370 0.94133 0.99130 1.21420 0.95585 0.99530 0.98422 1.21535 0.95388 0.97557 1.01126 1.21470 0.99044 0.96097 0.98688 1.21985 0.94792 1.02411 0.98028 1.22778 0.96155 0.91809 0.99090 0.93557 0.92574 0.92283 0.93266 0.93565 0.95132 0.97310 0.93253 0.90102 0.94678 0.91923 0.89309 0.90599 0.91796 0.91391 0.92564 0.92580 0.92193 0.91999 0.92306 0.89771 0.90941 0.94444 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 8.39 37.16 0.31 -2.30 16 2 C 0.08 1.38 2.31 -67.71 -0.16 1.22 16 3 H 0.08 1.35 8.00 -51.93 -0.42 0.94 16 4 C -0.10 -2.07 4.57 -26.73 -0.12 -2.19 16 5 C 0.03 0.84 4.80 -27.88 -0.13 0.70 16 6 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.07 13.29 55.43 0.74 -26.33 16 10 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 N -0.51 -8.40 3.51 -226.27 -0.80 -9.19 16 15 C 0.02 0.24 5.42 -3.66 -0.02 0.22 16 16 C 0.06 0.82 6.61 37.21 0.25 1.07 16 17 O -0.38 -5.38 8.95 -35.23 -0.32 -5.70 16 18 C 0.13 1.79 0.68 -90.62 -0.06 1.73 16 19 C -0.10 -1.27 4.95 -26.75 -0.13 -1.40 16 20 C -0.11 -1.27 5.78 -26.73 -0.15 -1.42 16 21 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 22 C -0.12 -1.54 5.78 -26.73 -0.15 -1.69 16 23 C -0.13 -2.08 4.26 -26.74 -0.11 -2.19 16 24 C 0.03 0.46 3.45 -3.73 -0.01 0.45 16 25 H 0.05 0.61 6.83 -51.93 -0.35 0.25 16 26 H 0.06 0.79 6.37 -51.93 -0.33 0.46 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.94 6.43 -51.93 -0.33 0.60 16 30 H 0.03 0.84 7.84 -51.93 -0.41 0.43 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.04 0.48 6.82 -51.93 -0.35 0.12 16 35 H 0.06 0.89 6.48 -51.93 -0.34 0.55 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.81 7.69 -51.93 -0.40 0.42 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.49 6.11 -51.93 -0.32 1.17 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.04 0.56 6.36 -51.93 -0.33 0.23 16 48 H 0.09 1.49 6.39 -51.93 -0.33 1.16 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -29.90 350.79 -10.10 -40.01 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.92 Total: -0.09 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.07 Total: -20.87 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.06 Total: -35.53 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.32 Total: -5.70 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.90 -10.10 -40.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.546 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds