Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47174 * 2 1 4 4 C 1.52998 * 109.47027 * 120.00423 * 2 1 3 5 5 C 1.53005 * 109.47031 * 184.01548 * 4 2 1 6 6 C 1.50697 * 109.47093 * 179.97438 * 5 4 2 7 7 H 1.08003 * 120.00268 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99812 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00126 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99830 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47256 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47156 * 120.00113 * 10 8 6 13 13 H 1.48510 * 109.47150 * 239.99970 * 10 8 6 14 14 N 1.46910 * 109.46957 * 240.00339 * 2 1 3 15 15 C 1.46846 * 110.99835 * 70.95970 * 14 2 1 16 16 C 1.53062 * 109.51027 * 174.11525 * 15 14 2 17 17 C 1.53015 * 109.26802 * 59.06426 * 16 15 14 18 18 C 1.53072 * 109.56171 * 182.42560 * 17 16 15 19 19 C 1.53196 * 109.04121 * 183.09378 * 18 17 16 20 20 C 1.53094 * 109.15213 * 56.86225 * 19 18 17 21 21 O 1.42901 * 109.44242 * 302.36059 * 20 19 18 22 22 C 1.42918 * 114.08047 * 61.19537 * 21 20 19 23 23 C 1.53033 * 109.32259 * 302.45315 * 17 16 15 24 24 C 1.46838 * 111.00102 * 306.69519 * 14 2 1 25 25 H 1.09002 * 109.47436 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47210 * 299.99631 * 1 2 3 27 27 H 1.08999 * 109.47472 * 59.99885 * 1 2 3 28 28 H 1.08998 * 109.47028 * 304.01497 * 4 2 1 29 29 H 1.09001 * 109.47112 * 64.01973 * 4 2 1 30 30 H 1.08998 * 109.47173 * 299.99860 * 5 4 2 31 31 H 1.08996 * 109.47174 * 59.99941 * 5 4 2 32 32 H 0.97002 * 119.99525 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46601 * 294.12745 * 15 14 2 34 34 H 1.09001 * 109.46705 * 54.10678 * 15 14 2 35 35 H 1.08996 * 109.50682 * 179.00795 * 16 15 14 36 36 H 1.09005 * 109.50370 * 299.12905 * 16 15 14 37 37 H 1.09005 * 109.54390 * 302.96533 * 18 17 16 38 38 H 1.09003 * 109.54035 * 63.13532 * 18 17 16 39 39 H 1.09002 * 109.52340 * 176.76310 * 19 18 17 40 40 H 1.08999 * 109.52336 * 296.89186 * 19 18 17 41 41 H 1.08996 * 109.48020 * 62.35641 * 20 19 18 42 42 H 1.09000 * 109.47647 * 182.37189 * 20 19 18 43 43 H 1.08996 * 109.47800 * 178.97116 * 22 21 20 44 44 H 1.09000 * 109.47913 * 58.93651 * 22 21 20 45 45 H 1.09006 * 109.50475 * 297.60985 * 23 17 16 46 46 H 1.09006 * 109.50823 * 177.48958 * 23 17 16 47 47 H 1.09001 * 109.46440 * 305.90389 * 24 14 2 48 48 H 1.09004 * 109.45740 * 65.88321 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5666 -0.6344 1.3007 6 6 4.0689 -1.3444 2.5314 7 1 3.3692 -1.8106 3.2093 8 6 5.4217 -1.3988 2.7920 9 7 6.2738 -0.8307 1.9668 10 14 6.0444 -2.2794 4.3172 11 1 4.8926 -2.8295 5.0761 12 1 6.9474 -3.3875 3.9150 13 1 6.7882 -1.3207 5.1734 14 7 2.0196 -0.6925 -1.1996 15 6 1.7733 0.1073 -2.4062 16 6 2.4242 -0.5738 -3.6126 17 6 1.8380 -1.9776 -3.7769 18 6 2.5275 -2.6874 -4.9448 19 6 1.8794 -4.0606 -5.1479 20 6 0.3774 -3.8776 -5.3811 21 8 -0.1956 -3.1855 -4.2699 22 6 0.3378 -1.8762 -4.0604 23 6 2.0630 -2.7741 -2.4897 24 6 1.4227 -2.0290 -1.3162 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.6190 -0.2508 2.1377 29 1 1.7366 -1.7677 1.2138 30 1 3.9875 -1.1050 0.4122 31 1 3.8700 0.4118 1.3360 32 1 7.2255 -0.8687 2.1504 33 1 0.6994 0.1923 -2.5728 34 1 2.2005 1.1017 -2.2764 35 1 2.2264 0.0107 -4.5111 36 1 3.5002 -0.6450 -3.4536 37 1 2.4137 -2.0928 -5.8513 38 1 3.5870 -2.8123 -4.7213 39 1 2.3255 -4.5495 -6.0139 40 1 2.0393 -4.6737 -4.2609 41 1 0.2187 -3.2987 -6.2909 42 1 -0.0960 -4.8540 -5.4843 43 1 -0.1621 -1.4118 -3.2104 44 1 0.1765 -1.2710 -4.9524 45 1 3.1328 -2.8831 -2.3114 46 1 1.6074 -3.7596 -2.5871 47 1 1.5951 -2.5854 -0.3949 48 1 0.3504 -1.9340 -1.4879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497989.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -67.244130 kcal Electronic energy + Delta-G solvation = -23979.973034 eV Core-core repulsion = 20840.648906 eV Total energy + Delta-G solvation = -3139.324128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62876 -38.23002 -35.42581 -33.38789 -32.54612 -30.83168 -30.63081 -29.05026 -26.80298 -25.37852 -25.02797 -23.39460 -23.13300 -21.41077 -20.48534 -19.24737 -18.20695 -16.49746 -16.11889 -16.03823 -15.72539 -14.88611 -14.56559 -14.47312 -14.27566 -14.20110 -13.85049 -13.21733 -13.10775 -12.76660 -12.64459 -12.43665 -12.14474 -11.94192 -11.75225 -11.53414 -11.32395 -11.26914 -11.09439 -11.02298 -10.82818 -10.80524 -10.48273 -10.37673 -10.19706 -9.93331 -9.82791 -9.51885 -9.41842 -9.14491 -8.83615 -8.20865 -7.63469 -5.86254 -3.87226 3.37444 3.44810 3.48974 3.79660 4.30346 4.56000 4.63196 4.64754 4.72960 4.84941 5.00121 5.15598 5.25968 5.35813 5.37769 5.42863 5.49273 5.51869 5.54965 5.56951 5.60556 5.69236 5.74343 5.75155 5.85646 5.86459 5.94974 5.98141 6.10913 6.18087 6.20496 6.25347 6.33031 6.40651 6.43818 6.47892 6.60088 6.74085 6.94100 7.12186 7.34090 7.65005 7.67842 7.88418 8.11027 8.26284 8.60320 9.22206 9.75371 11.24736 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.004302 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.917209 B = 6506.995319 C = 7049.276967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.102 4.102 5 C 0.030 3.970 6 C -0.517 4.517 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.516 5.516 15 C 0.054 3.946 16 C -0.104 4.104 17 C -0.090 4.090 18 C -0.111 4.111 19 C -0.157 4.157 20 C 0.061 3.939 21 O -0.379 6.379 22 C 0.069 3.931 23 C -0.100 4.100 24 C 0.054 3.946 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.008 0.992 32 H 0.257 0.743 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.044 0.956 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.879 -2.089 -16.238 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 H 0.093 0.907 4 C -0.139 4.139 5 C -0.007 4.007 6 C -0.556 4.556 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.713 3.287 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.212 1.212 14 N -0.240 5.240 15 C -0.074 4.074 16 C -0.142 4.142 17 C -0.090 4.090 18 C -0.148 4.148 19 C -0.195 4.195 20 C -0.016 4.016 21 O -0.298 6.298 22 C -0.008 4.008 23 C -0.138 4.138 24 C -0.074 4.074 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -11.327 -2.198 -16.097 19.806 hybrid contribution -0.140 -0.194 0.578 0.625 sum -11.467 -2.392 -15.519 19.444 Atomic orbital electron populations 1.22508 0.98994 1.01677 1.01152 1.21854 0.90974 0.98445 0.91351 0.90665 1.21710 1.00779 0.98286 0.93163 1.18989 0.88072 0.96645 0.96972 1.21393 0.91694 1.34308 1.08179 0.93119 1.24987 0.97150 0.95815 0.96414 1.69996 1.01941 1.44852 1.36618 0.86652 0.78829 0.79548 0.83637 1.19889 1.21158 1.21190 1.62026 1.58447 1.02130 1.01363 1.22082 0.97452 0.97271 0.90607 1.21580 1.01611 0.94035 0.96928 1.21130 0.95333 0.96444 0.96110 1.21621 1.00198 0.95458 0.97543 1.22223 0.96263 0.98267 1.02754 1.22541 0.93248 0.96959 0.88881 1.87941 1.62712 1.29176 1.49960 1.22747 0.93399 0.84036 1.00585 1.21573 1.02009 0.97862 0.92314 1.22135 0.95524 0.90566 0.99169 0.92553 0.92402 0.93660 0.93458 0.93391 0.94940 0.97362 0.93349 0.95550 0.91001 0.92145 0.90373 0.92224 0.91099 0.91263 0.90565 0.93668 0.89274 0.88813 0.93747 0.90848 0.91386 0.90000 0.95112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.44 37.15 0.31 -2.32 16 2 C 0.08 1.41 2.31 -67.71 -0.16 1.25 16 3 H 0.08 1.34 7.97 -51.93 -0.41 0.92 16 4 C -0.10 -2.13 4.55 -26.73 -0.12 -2.25 16 5 C 0.03 0.80 4.85 -27.88 -0.14 0.66 16 6 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 7 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.51 13.29 55.43 0.74 -26.78 16 10 Si 0.88 22.16 29.54 -169.99 -5.02 17.14 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 N -0.52 -8.53 4.00 -226.67 -0.91 -9.44 16 15 C 0.05 0.74 4.90 -3.82 -0.02 0.72 16 16 C -0.10 -1.27 4.89 -26.69 -0.13 -1.40 16 17 C -0.09 -1.06 0.51 -154.44 -0.08 -1.14 16 18 C -0.11 -1.14 4.81 -26.59 -0.13 -1.27 16 19 C -0.16 -1.48 5.78 -26.58 -0.15 -1.64 16 20 C 0.06 0.58 6.84 37.21 0.25 0.83 16 21 O -0.38 -4.65 10.16 -35.23 -0.36 -5.01 16 22 C 0.07 0.79 4.95 37.16 0.18 0.97 16 23 C -0.10 -1.40 4.44 -26.69 -0.12 -1.52 16 24 C 0.05 0.83 4.28 -3.83 -0.02 0.82 16 25 H 0.06 0.80 6.45 -51.93 -0.34 0.47 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.58 6.85 -51.93 -0.36 0.23 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.00 6.29 -51.93 -0.33 0.67 16 30 H 0.03 0.92 7.72 -51.93 -0.40 0.52 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.03 0.33 5.35 -51.93 -0.28 0.06 16 34 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.79 6.70 -51.93 -0.35 0.45 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.14 4.95 -51.93 -0.26 0.89 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 0.93 6.23 -51.93 -0.32 0.61 16 47 H 0.08 1.43 6.18 -51.93 -0.32 1.11 16 48 H 0.03 0.45 4.90 -51.93 -0.25 0.20 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -30.78 345.77 -9.70 -40.48 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.64 Total: -1.59 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -0.72 Total: -20.02 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.17 Total: -36.21 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.36 Total: -5.01 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.78 -9.70 -40.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497989.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.763 kcal (2) G-P(sol) polarization free energy of solvation -30.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds