Wall clock time and date at job start Tue Mar 31 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.52999 * 109.47290 * 239.98988 * 2 1 3 5 5 C 1.53009 * 109.46795 * 63.11973 * 4 2 1 6 6 C 1.50698 * 109.47167 * 174.79775 * 5 4 2 7 7 H 1.07999 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99985 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99754 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00037 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47380 * 89.99989 * 10 8 6 12 12 H 1.48498 * 109.46900 * 209.99926 * 10 8 6 13 13 H 1.48499 * 109.46889 * 329.99593 * 10 8 6 14 14 N 1.46903 * 109.46665 * 119.99636 * 2 1 3 15 15 C 1.46839 * 111.00286 * 306.04927 * 14 2 1 16 16 C 1.53051 * 109.51670 * 174.11972 * 15 14 2 17 17 C 1.53036 * 109.26157 * 59.09759 * 16 15 14 18 18 C 1.53086 * 109.50141 * 62.42150 * 17 16 15 19 19 C 1.53197 * 109.01976 * 63.17202 * 18 17 16 20 20 C 1.53087 * 109.15179 * 56.89856 * 19 18 17 21 21 O 1.42900 * 109.43747 * 302.35542 * 20 19 18 22 22 C 1.42925 * 114.10544 * 61.16317 * 21 20 19 23 23 C 1.53021 * 109.31376 * 302.44053 * 17 16 15 24 24 C 1.46851 * 110.99837 * 181.81302 * 14 2 1 25 25 H 1.08991 * 109.47154 * 300.00328 * 1 2 3 26 26 H 1.08994 * 109.46671 * 60.00833 * 1 2 3 27 27 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47176 * 183.11519 * 4 2 1 29 29 H 1.08996 * 109.47279 * 303.12160 * 4 2 1 30 30 H 1.09003 * 109.46660 * 294.80205 * 5 4 2 31 31 H 1.09007 * 109.46791 * 54.79703 * 5 4 2 32 32 H 0.97000 * 119.99564 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46144 * 54.10229 * 15 14 2 34 34 H 1.09003 * 109.46545 * 294.13682 * 15 14 2 35 35 H 1.09002 * 109.50686 * 299.15897 * 16 15 14 36 36 H 1.09002 * 109.53881 * 179.05000 * 16 15 14 37 37 H 1.08999 * 109.54872 * 183.03488 * 18 17 16 38 38 H 1.09001 * 109.54855 * 303.21905 * 18 17 16 39 39 H 1.09002 * 109.52779 * 176.80074 * 19 18 17 40 40 H 1.09000 * 109.52572 * 296.93239 * 19 18 17 41 41 H 1.08998 * 109.47824 * 62.34526 * 20 19 18 42 42 H 1.09005 * 109.48024 * 182.37027 * 20 19 18 43 43 H 1.08996 * 109.48719 * 178.99653 * 22 21 20 44 44 H 1.09000 * 109.47822 * 58.96257 * 22 21 20 45 45 H 1.09000 * 109.50154 * 177.48136 * 23 17 16 46 46 H 1.08997 * 109.50471 * 297.59968 * 23 17 16 47 47 H 1.08996 * 109.46202 * 305.88218 * 24 14 2 48 48 H 1.08997 * 109.46287 * 65.84387 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7215 -1.2491 5 6 1.5951 0.0436 -2.4973 6 6 2.2031 -0.5934 -3.7202 7 1 2.8425 -1.4577 -3.6175 8 6 1.9431 -0.0728 -4.9701 9 7 1.1640 0.9793 -5.0951 10 14 2.6961 -0.8628 -6.4861 11 1 1.7805 -1.9105 -7.0050 12 1 2.9070 0.1717 -7.5304 13 1 3.9996 -1.4776 -6.1281 14 7 2.0196 -0.6925 1.1995 15 6 1.4344 -0.1151 2.4162 16 6 1.8498 -0.9504 3.6295 17 6 3.3766 -0.9677 3.7317 18 6 3.8901 0.4572 3.9540 19 6 3.3560 0.9772 5.2923 20 6 3.7845 0.0222 6.4094 21 8 3.2986 -1.2911 6.1246 22 6 3.8013 -1.8485 4.9083 23 6 3.9644 -1.5264 2.4340 24 6 3.4869 -0.6746 1.2554 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1286 -0.7701 -1.2216 29 1 1.6318 -1.7317 -1.2774 30 1 0.5082 0.0130 -2.5739 31 1 1.9253 1.0799 -2.4251 32 1 0.9808 1.3454 -5.9745 33 1 0.3477 -0.1135 2.3311 34 1 1.7902 0.9077 2.5404 35 1 1.4811 -1.9696 3.5132 36 1 1.4294 -0.5124 4.5349 37 1 4.9800 0.4533 3.9731 38 1 3.5419 1.1006 3.1460 39 1 3.7625 1.9699 5.4859 40 1 2.2679 1.0302 5.2545 41 1 4.8725 0.0015 6.4724 42 1 3.3718 0.3644 7.3585 43 1 3.3987 -2.8525 4.7747 44 1 4.8894 -1.8959 4.9526 45 1 5.0528 -1.4985 2.4859 46 1 3.6322 -2.5555 2.2975 47 1 3.8906 -1.0797 0.3275 48 1 3.8330 0.3508 1.3847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172497992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:55 Heat of formation + Delta-G solvation = -68.209022 kcal Electronic energy + Delta-G solvation = -23486.426594 eV Core-core repulsion = 20347.060625 eV Total energy + Delta-G solvation = -3139.365969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.71503 -38.26706 -35.60501 -33.37441 -32.54585 -31.42967 -30.88377 -28.77648 -26.95887 -25.53609 -25.22346 -23.16492 -22.90992 -21.52932 -20.95676 -19.17166 -18.26507 -16.80470 -16.33643 -16.18752 -15.54229 -15.06786 -14.74068 -14.62140 -14.38789 -14.20834 -14.05898 -13.71421 -13.06343 -12.78077 -12.62190 -12.41676 -12.16488 -12.00544 -11.82233 -11.52842 -11.41364 -11.14541 -11.10411 -11.03938 -10.94213 -10.75485 -10.66952 -10.47200 -10.36994 -10.19411 -9.86039 -9.51228 -9.50718 -9.25355 -8.97627 -8.30949 -7.89900 -5.97431 -3.99090 3.33378 3.39448 3.42915 3.67950 4.15518 4.48094 4.51619 4.53392 4.59702 4.72308 4.89067 5.06167 5.17624 5.24988 5.31683 5.38191 5.38346 5.44423 5.48698 5.50246 5.57654 5.61119 5.66305 5.70398 5.79115 5.83147 5.88953 5.95555 6.02991 6.04737 6.12007 6.20106 6.27906 6.34963 6.41857 6.47616 6.68408 6.78972 6.83196 6.99698 7.18384 7.49632 7.54719 7.72334 7.88496 8.03580 8.47442 9.08246 9.64647 11.13951 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036457 B = 0.003268 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.848084 B = 8566.142016 C = 8851.110200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.082 3.918 3 H 0.032 0.968 4 C -0.101 4.101 5 C 0.023 3.977 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.532 5.532 15 C 0.049 3.951 16 C -0.098 4.098 17 C -0.091 4.091 18 C -0.116 4.116 19 C -0.157 4.157 20 C 0.061 3.939 21 O -0.381 6.381 22 C 0.072 3.928 23 C -0.103 4.103 24 C 0.053 3.947 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.077 0.923 34 H 0.028 0.972 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 -1.587 22.334 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.050 0.950 4 C -0.139 4.139 5 C -0.015 4.015 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.257 5.257 15 C -0.079 4.079 16 C -0.136 4.136 17 C -0.092 4.092 18 C -0.153 4.153 19 C -0.195 4.195 20 C -0.016 4.016 21 O -0.300 6.300 22 C -0.004 4.004 23 C -0.141 4.141 24 C -0.075 4.075 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.199 -2.048 22.296 22.780 hybrid contribution 0.877 0.749 -1.127 1.613 sum 5.076 -1.299 21.169 21.807 Atomic orbital electron populations 1.21929 0.94833 1.02133 1.01236 1.21761 0.95377 0.95337 0.90027 0.94969 1.21717 0.99347 0.99452 0.93360 1.19128 0.96762 0.95036 0.90550 1.21271 1.29331 1.13525 0.91490 0.92771 1.25019 0.95348 0.95049 0.99077 1.69967 1.37320 1.22896 1.23428 0.86617 0.79657 0.79016 0.82857 1.20674 1.21292 1.19910 1.62006 1.06347 1.55499 1.01862 1.22187 1.00046 0.95606 0.90025 1.21557 0.93657 1.01184 0.97212 1.21155 0.96967 0.95532 0.95497 1.21734 1.00113 0.96156 0.97335 1.22224 1.02373 0.99173 0.95686 1.22543 0.98088 0.83032 0.97893 1.87923 1.70941 1.30511 1.40591 1.22632 0.97716 0.96810 0.83278 1.21559 0.99237 1.00332 0.92979 1.22112 0.88455 0.98090 0.98872 0.93822 0.91172 0.92231 0.93369 0.92717 0.96241 0.97012 0.93086 0.90424 0.95403 0.91244 0.91312 0.92083 0.90999 0.91220 0.90745 0.93509 0.89217 0.88829 0.93414 0.91866 0.90854 0.89794 0.95241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.49 37.16 0.32 -2.09 16 2 C 0.08 1.45 2.17 -67.71 -0.15 1.31 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.10 -2.12 4.56 -26.73 -0.12 -2.24 16 5 C 0.02 0.59 4.55 -27.88 -0.13 0.46 16 6 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 10 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 N -0.53 -8.00 4.52 -226.67 -1.03 -9.03 16 15 C 0.05 0.64 4.84 -3.83 -0.02 0.62 16 16 C -0.10 -1.11 4.51 -26.69 -0.12 -1.23 16 17 C -0.09 -0.93 0.51 -154.44 -0.08 -1.01 16 18 C -0.12 -1.14 4.21 -26.59 -0.11 -1.25 16 19 C -0.16 -1.34 5.78 -26.58 -0.15 -1.50 16 20 C 0.06 0.51 6.84 37.20 0.25 0.77 16 21 O -0.38 -4.04 10.25 -35.23 -0.36 -4.40 16 22 C 0.07 0.69 5.54 37.15 0.21 0.90 16 23 C -0.10 -1.15 4.89 -26.69 -0.13 -1.28 16 24 C 0.05 0.73 5.01 -3.82 -0.02 0.71 16 25 H 0.04 0.63 6.20 -51.93 -0.32 0.30 16 26 H 0.07 1.29 6.63 -51.93 -0.34 0.94 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.00 6.17 -51.93 -0.32 0.68 16 29 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.53 6.78 -51.93 -0.35 0.17 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.01 5.87 -51.93 -0.30 0.70 16 34 H 0.03 0.37 6.45 -51.93 -0.33 0.03 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.75 6.11 -51.93 -0.32 0.43 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.80 4.95 -51.93 -0.26 0.54 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.68 6.58 -51.93 -0.34 0.34 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.28 6.00 -51.93 -0.31 0.97 16 48 H 0.03 0.41 6.59 -51.93 -0.34 0.07 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -30.02 345.60 -9.71 -39.73 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -8.59 Total: -2.53 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.66 Total: -19.43 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.29 Total: -35.41 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.36 Total: -4.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.02 -9.71 -39.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.479 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds