Wall clock time and date at job start Tue Mar 31 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47135 * 2 1 4 4 C 1.52999 * 109.47290 * 239.98988 * 2 1 3 5 5 C 1.53009 * 109.46795 * 63.11973 * 4 2 1 6 6 C 1.50698 * 109.47167 * 174.79775 * 5 4 2 7 7 H 1.07999 * 119.99762 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99985 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99754 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00037 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47380 * 89.99989 * 10 8 6 12 12 H 1.48498 * 109.46900 * 209.99926 * 10 8 6 13 13 H 1.48499 * 109.46889 * 329.99593 * 10 8 6 14 14 N 1.46903 * 109.46665 * 119.99636 * 2 1 3 15 15 C 1.46839 * 111.00286 * 306.04927 * 14 2 1 16 16 C 1.53051 * 109.51670 * 174.11972 * 15 14 2 17 17 C 1.53036 * 109.26157 * 59.09759 * 16 15 14 18 18 C 1.53086 * 109.50141 * 62.42150 * 17 16 15 19 19 C 1.53197 * 109.01976 * 63.17202 * 18 17 16 20 20 C 1.53087 * 109.15179 * 56.89856 * 19 18 17 21 21 O 1.42900 * 109.43747 * 302.35542 * 20 19 18 22 22 C 1.42925 * 114.10544 * 61.16317 * 21 20 19 23 23 C 1.53021 * 109.31376 * 302.44053 * 17 16 15 24 24 C 1.46851 * 110.99837 * 181.81302 * 14 2 1 25 25 H 1.08991 * 109.47154 * 300.00328 * 1 2 3 26 26 H 1.08994 * 109.46671 * 60.00833 * 1 2 3 27 27 H 1.08998 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47176 * 183.11519 * 4 2 1 29 29 H 1.08996 * 109.47279 * 303.12160 * 4 2 1 30 30 H 1.09003 * 109.46660 * 294.80205 * 5 4 2 31 31 H 1.09007 * 109.46791 * 54.79703 * 5 4 2 32 32 H 0.97000 * 119.99564 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46144 * 54.10229 * 15 14 2 34 34 H 1.09003 * 109.46545 * 294.13682 * 15 14 2 35 35 H 1.09002 * 109.50686 * 299.15897 * 16 15 14 36 36 H 1.09002 * 109.53881 * 179.05000 * 16 15 14 37 37 H 1.08999 * 109.54872 * 183.03488 * 18 17 16 38 38 H 1.09001 * 109.54855 * 303.21905 * 18 17 16 39 39 H 1.09002 * 109.52779 * 176.80074 * 19 18 17 40 40 H 1.09000 * 109.52572 * 296.93239 * 19 18 17 41 41 H 1.08998 * 109.47824 * 62.34526 * 20 19 18 42 42 H 1.09005 * 109.48024 * 182.37027 * 20 19 18 43 43 H 1.08996 * 109.48719 * 178.99653 * 22 21 20 44 44 H 1.09000 * 109.47822 * 58.96257 * 22 21 20 45 45 H 1.09000 * 109.50154 * 177.48136 * 23 17 16 46 46 H 1.08997 * 109.50471 * 297.59968 * 23 17 16 47 47 H 1.08996 * 109.46202 * 305.88218 * 24 14 2 48 48 H 1.08997 * 109.46287 * 65.84387 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7215 -1.2491 5 6 1.5951 0.0436 -2.4973 6 6 2.2031 -0.5934 -3.7202 7 1 2.8425 -1.4577 -3.6175 8 6 1.9431 -0.0728 -4.9701 9 7 1.1640 0.9793 -5.0951 10 14 2.6961 -0.8628 -6.4861 11 1 1.7805 -1.9105 -7.0050 12 1 2.9070 0.1717 -7.5304 13 1 3.9996 -1.4776 -6.1281 14 7 2.0196 -0.6925 1.1995 15 6 1.4344 -0.1151 2.4162 16 6 1.8498 -0.9504 3.6295 17 6 3.3766 -0.9677 3.7317 18 6 3.8901 0.4572 3.9540 19 6 3.3560 0.9772 5.2923 20 6 3.7845 0.0222 6.4094 21 8 3.2986 -1.2911 6.1246 22 6 3.8013 -1.8485 4.9083 23 6 3.9644 -1.5264 2.4340 24 6 3.4869 -0.6746 1.2554 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1286 -0.7701 -1.2216 29 1 1.6318 -1.7317 -1.2774 30 1 0.5082 0.0130 -2.5739 31 1 1.9253 1.0799 -2.4251 32 1 0.9808 1.3454 -5.9745 33 1 0.3477 -0.1135 2.3311 34 1 1.7902 0.9077 2.5404 35 1 1.4811 -1.9696 3.5132 36 1 1.4294 -0.5124 4.5349 37 1 4.9800 0.4533 3.9731 38 1 3.5419 1.1006 3.1460 39 1 3.7625 1.9699 5.4859 40 1 2.2679 1.0302 5.2545 41 1 4.8725 0.0015 6.4724 42 1 3.3718 0.3644 7.3585 43 1 3.3987 -2.8525 4.7747 44 1 4.8894 -1.8959 4.9526 45 1 5.0528 -1.4985 2.4859 46 1 3.6322 -2.5555 2.2975 47 1 3.8906 -1.0797 0.3275 48 1 3.8330 0.3508 1.3847 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172497992.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:55 Heat of formation + Delta-G solvation = -85.828539 kcal Electronic energy + Delta-G solvation = -23487.190634 eV Core-core repulsion = 20347.060625 eV Total energy + Delta-G solvation = -3140.130009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60525 -39.35039 -36.85843 -35.17473 -33.57058 -32.84579 -31.90406 -30.39196 -27.95594 -27.14092 -26.23041 -24.35578 -24.05727 -22.84970 -22.07467 -20.73393 -19.13346 -18.58557 -17.56828 -16.96817 -16.67134 -16.41503 -16.05616 -15.86331 -15.56006 -15.34091 -15.11940 -14.86438 -14.35379 -14.19791 -13.89498 -13.63035 -13.44885 -13.26911 -13.07500 -12.86885 -12.75971 -12.52070 -12.45459 -12.39819 -12.11113 -12.04914 -11.90910 -11.83207 -11.52056 -11.39397 -11.18273 -11.13899 -11.04470 -10.72914 -10.52793 -10.27593 -9.13566 -8.19884 -6.30565 1.39175 1.40614 1.51640 2.40578 2.94095 3.01042 3.13086 3.68065 3.70897 3.76704 4.02362 4.05868 4.07108 4.17765 4.21801 4.34929 4.46204 4.47845 4.49142 4.54986 4.58534 4.70143 4.72909 4.76008 4.80104 4.82743 4.93737 4.96347 4.97245 5.01396 5.03774 5.07504 5.12130 5.16299 5.21491 5.23771 5.26907 5.42206 5.44046 5.50399 5.53359 5.78222 5.86581 6.18083 6.28551 6.31009 6.33525 6.86433 7.38348 8.91878 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.036457 B = 0.003268 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.848084 B = 8566.142016 C = 8851.110200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.091 3.909 3 H 0.019 0.981 4 C -0.086 4.086 5 C 0.030 3.970 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.000 4.000 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.264 1.264 14 N -0.534 5.534 15 C 0.050 3.950 16 C -0.091 4.091 17 C -0.087 4.087 18 C -0.115 4.115 19 C -0.153 4.153 20 C 0.058 3.942 21 O -0.397 6.397 22 C 0.075 3.925 23 C -0.096 4.096 24 C 0.051 3.949 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.050 0.950 30 H -0.001 1.001 31 H -0.015 1.015 32 H 0.263 0.737 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -2.416 23.643 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 H 0.037 0.963 4 C -0.124 4.124 5 C -0.007 4.007 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.188 1.188 14 N -0.259 5.259 15 C -0.077 4.077 16 C -0.129 4.129 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.191 4.191 20 C -0.018 4.018 21 O -0.316 6.316 22 C -0.002 4.002 23 C -0.134 4.134 24 C -0.077 4.077 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.017 0.983 31 H 0.003 0.997 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.254 -2.884 23.626 24.375 hybrid contribution 0.541 1.051 -1.507 1.915 sum 5.795 -1.833 22.120 22.940 Atomic orbital electron populations 1.21846 0.94083 1.02227 1.01339 1.21507 0.95929 0.94261 0.90036 0.96295 1.21469 0.99257 0.98688 0.92947 1.18987 0.95260 0.94025 0.92460 1.21704 1.29688 1.13885 0.92802 0.92476 1.25965 0.95686 0.95515 1.02617 1.70098 1.38494 1.24271 1.24454 0.85469 0.79121 0.78174 0.78432 1.19737 1.20685 1.18797 1.61981 1.07234 1.55074 1.01597 1.22237 0.99948 0.95915 0.89606 1.21495 0.94561 1.00457 0.96399 1.21112 0.96085 0.96141 0.95405 1.21712 1.00584 0.95442 0.97538 1.22198 1.01901 0.99935 0.95042 1.22690 0.98806 0.82035 0.98292 1.87909 1.71430 1.31541 1.40752 1.22622 0.98410 0.96608 0.82568 1.21509 1.00232 0.99510 0.92145 1.22148 0.87629 0.98502 0.99429 0.91239 0.93517 0.92092 0.93373 0.93089 0.98272 0.99690 0.92802 0.90355 0.95396 0.91730 0.90607 0.91326 0.92613 0.89942 0.91467 0.92511 0.87864 0.88549 0.92244 0.90224 0.91047 0.91546 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.49 71.98 0.61 -4.02 16 2 C 0.09 3.26 2.17 44.92 0.10 3.35 16 3 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 4 C -0.09 -3.69 4.56 30.60 0.14 -3.55 16 5 C 0.03 1.63 4.55 29.85 0.14 1.76 16 6 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 7 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 8 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 9 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 10 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 14 N -0.53 -15.83 4.52 -871.06 -3.94 -19.77 16 15 C 0.05 1.25 4.84 86.33 0.42 1.67 16 16 C -0.09 -1.91 4.51 30.62 0.14 -1.78 16 17 C -0.09 -1.62 0.51 -52.14 -0.03 -1.64 16 18 C -0.12 -2.04 4.21 30.69 0.13 -1.91 16 19 C -0.15 -2.28 5.78 30.69 0.18 -2.10 16 20 C 0.06 0.82 6.84 72.01 0.49 1.31 16 21 O -0.40 -7.45 10.25 -148.98 -1.53 -8.98 16 22 C 0.07 1.25 5.54 71.98 0.40 1.65 16 23 C -0.10 -1.99 4.89 30.62 0.15 -1.84 16 24 C 0.05 1.38 5.01 86.33 0.43 1.82 16 25 H 0.07 1.95 6.20 -2.39 -0.01 1.94 16 26 H 0.05 1.78 6.63 -2.39 -0.02 1.76 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.05 6.17 -2.39 -0.01 2.04 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.00 -0.06 6.78 -2.39 -0.02 -0.08 16 31 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.08 1.92 5.87 -2.38 -0.01 1.91 16 34 H 0.03 0.71 6.45 -2.39 -0.02 0.69 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.51 6.11 -2.39 -0.01 1.50 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.17 4.95 -2.39 -0.01 1.16 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.07 1.10 6.58 -2.39 -0.02 1.09 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.07 2.03 6.00 -2.39 -0.01 2.02 16 48 H 0.03 0.76 6.59 -2.39 -0.02 0.74 16 Total: -1.00 -64.70 345.60 1.75 -62.95 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.91 Total: 12.34 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 3.99 Total: -36.24 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -3.65 Total: -77.02 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.53 Total: -8.98 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.70 1.75 -62.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172497992.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.877 kcal (2) G-P(sol) polarization free energy of solvation -64.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds