Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47163 * 2 1 4 4 C 1.52999 * 109.47574 * 239.99729 * 2 1 3 5 5 C 1.52994 * 109.47431 * 174.99791 * 4 2 1 6 6 C 1.50705 * 109.47149 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99964 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00043 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99790 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00019 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47225 * 59.99965 * 10 8 6 12 12 H 1.48497 * 109.47447 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47175 * 299.99903 * 10 8 6 14 14 N 1.46902 * 109.47272 * 119.99450 * 2 1 3 15 15 C 1.48535 * 110.99625 * 49.07990 * 14 2 1 16 16 C 1.55107 * 103.28294 * 200.33335 * 15 14 2 17 17 C 1.54598 * 102.84562 * 37.30564 * 16 15 14 18 18 H 1.08998 * 110.30869 * 97.11502 * 17 16 15 19 19 C 1.52996 * 110.30795 * 219.18729 * 17 16 15 20 20 O 1.42904 * 109.47220 * 292.20634 * 19 17 16 21 21 C 1.42899 * 114.00182 * 179.97438 * 20 19 17 22 22 C 1.53000 * 109.46798 * 180.02562 * 21 20 19 23 23 C 1.53007 * 117.49534 * 185.00382 * 22 21 20 24 24 C 1.52996 * 117.49714 * 116.38285 * 22 21 20 25 25 C 1.47900 * 110.99874 * 291.68501 * 14 2 1 26 26 H 1.08996 * 109.47332 * 292.45619 * 1 2 3 27 27 H 1.09005 * 109.47370 * 52.45067 * 1 2 3 28 28 H 1.08999 * 109.47398 * 172.45221 * 1 2 3 29 29 H 1.09003 * 109.46717 * 295.00575 * 4 2 1 30 30 H 1.09001 * 109.47066 * 54.99471 * 4 2 1 31 31 H 1.08995 * 109.47513 * 300.00240 * 5 4 2 32 32 H 1.09002 * 109.46778 * 60.00003 * 5 4 2 33 33 H 0.97005 * 119.99563 * 180.02562 * 9 8 6 34 34 H 1.09006 * 110.66577 * 318.71020 * 15 14 2 35 35 H 1.08992 * 110.66672 * 81.67770 * 15 14 2 36 36 H 1.08995 * 110.70943 * 278.99618 * 16 15 14 37 37 H 1.08999 * 110.81030 * 155.66163 * 16 15 14 38 38 H 1.08999 * 109.47122 * 172.21131 * 19 17 16 39 39 H 1.08995 * 109.47534 * 52.21093 * 19 17 16 40 40 H 1.09000 * 109.46728 * 60.00646 * 21 20 19 41 41 H 1.09000 * 109.47174 * 300.00077 * 21 20 19 42 42 H 1.09001 * 115.56353 * 330.68691 * 22 21 20 43 43 H 1.08992 * 117.49906 * 145.01812 * 23 22 21 44 44 H 1.09001 * 117.49388 * 359.97438 * 23 22 21 45 45 H 1.08996 * 117.50382 * 359.97438 * 24 22 21 46 46 H 1.08998 * 117.51662 * 214.96915 * 24 22 21 47 47 H 1.08995 * 109.92401 * 26.49133 * 25 14 2 48 48 H 1.09000 * 109.91961 * 265.19102 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 6 4.0673 -1.3243 -2.5437 7 1 3.3688 -1.8048 -3.2129 8 6 5.4186 -1.3614 -2.8149 9 7 6.2691 -0.7767 -1.9998 10 14 6.0413 -2.2421 -4.3400 11 1 5.4497 -1.6157 -5.5495 12 1 7.5213 -2.1384 -4.4019 13 1 5.6479 -3.6729 -4.2807 14 7 2.0197 -0.6924 1.1995 15 6 1.3407 -2.0021 1.3725 16 6 1.5579 -2.3204 2.8749 17 6 1.4294 -0.9319 3.5425 18 1 0.4213 -0.7914 3.9323 19 6 2.4575 -0.7858 4.6661 20 8 2.1268 -1.6771 5.7331 21 6 3.0299 -1.6199 6.8392 22 6 2.5812 -2.6104 7.9155 23 6 3.3540 -2.6167 9.2360 24 6 3.5232 -3.7701 8.2451 25 6 1.7153 0.0840 2.4210 26 1 -0.3634 0.3925 0.9497 27 1 -0.3634 0.6263 -0.8148 28 1 -0.3634 -1.0187 -0.1350 29 1 1.7516 -1.7715 -1.2055 30 1 1.6054 -0.2619 -2.1369 31 1 3.8532 0.4369 -1.3573 32 1 3.9994 -1.0727 -0.4258 33 1 7.2198 -0.8025 -2.1908 34 1 0.2773 -1.9167 1.1485 35 1 1.8051 -2.7621 0.7442 36 1 2.5510 -2.7378 3.0409 37 1 0.7872 -2.9979 3.2426 38 1 2.4501 0.2401 5.0342 39 1 3.4495 -1.0278 4.2848 40 1 3.0347 -0.6113 7.2524 41 1 4.0335 -1.8796 6.5026 42 1 1.5095 -2.8047 7.9586 43 1 2.7908 -2.8150 10.1478 44 1 4.1822 -1.9154 9.3377 45 1 4.4624 -3.8276 7.6949 46 1 3.0716 -4.7274 8.5051 47 1 0.8385 0.7097 2.2545 48 1 2.5710 0.7032 2.6903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -32.691398 kcal Electronic energy + Delta-G solvation = -22303.825935 eV Core-core repulsion = 19166.000126 eV Total energy + Delta-G solvation = -3137.825810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.51540 -38.41675 -36.75952 -34.71136 -32.76629 -30.38690 -29.42679 -28.49211 -27.21298 -25.25919 -24.30064 -22.67545 -22.39363 -21.03454 -20.86769 -19.87255 -18.89408 -17.02099 -16.39163 -16.06940 -15.74508 -15.62315 -14.91890 -14.55817 -14.43338 -13.96104 -13.81753 -13.40718 -13.08076 -12.61025 -12.54041 -12.30016 -11.84451 -11.82946 -11.78552 -11.45247 -11.38651 -11.25182 -10.99088 -10.91299 -10.79932 -10.72218 -10.63867 -10.44674 -10.42657 -10.29011 -10.07724 -9.61066 -9.55621 -9.16795 -8.87296 -8.21226 -7.79375 -5.86363 -3.87624 3.27734 3.39716 3.43843 3.46393 3.63794 4.40098 4.51227 4.55589 4.60251 4.70189 4.77053 4.86185 5.06138 5.12958 5.23539 5.31353 5.33629 5.39352 5.45321 5.48836 5.49893 5.52542 5.58883 5.59938 5.66233 5.72257 5.75330 5.80048 5.90624 5.95137 6.06837 6.13221 6.22214 6.30010 6.34501 6.45727 6.48610 6.69948 6.89133 7.13555 7.31966 7.40248 7.59608 7.86853 8.09915 8.25249 8.59471 9.21222 9.74769 11.24649 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.003180 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.723226 B = 8803.202495 C = 9938.349751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.076 0.924 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.494 5.494 15 C 0.027 3.973 16 C -0.110 4.110 17 C -0.094 4.094 18 H 0.077 0.923 19 C 0.073 3.927 20 O -0.385 6.385 21 C 0.093 3.907 22 C -0.152 4.152 23 C -0.176 4.176 24 C -0.177 4.177 25 C 0.038 3.962 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.008 0.992 32 H 0.032 0.968 33 H 0.258 0.742 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.047 0.953 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.106 -0.839 19.361 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.037 4.037 3 H 0.094 0.906 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.217 5.217 15 C -0.100 4.100 16 C -0.148 4.148 17 C -0.113 4.113 18 H 0.095 0.905 19 C -0.004 4.004 20 O -0.305 6.305 21 C 0.016 3.984 22 C -0.170 4.170 23 C -0.213 4.213 24 C -0.214 4.214 25 C -0.090 4.090 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.027 0.973 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.065 0.935 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.499 -0.977 19.295 21.529 hybrid contribution -0.215 -0.107 -0.767 0.803 sum -9.713 -1.084 18.528 20.948 Atomic orbital electron populations 1.22515 0.98866 1.01884 1.01146 1.21995 0.91133 0.98696 0.91859 0.90589 1.21648 1.00738 0.98265 0.93014 1.18990 0.88133 0.96606 0.96985 1.21310 0.91829 1.34093 1.08500 0.93190 1.24996 0.97135 0.95793 0.96490 1.69974 1.02186 1.44347 1.36922 0.86746 0.77573 0.80291 0.83859 1.20426 1.21405 1.20383 1.64986 1.53529 1.02407 1.00815 1.23387 0.97335 0.93103 0.96214 1.22498 1.02434 0.95579 0.94293 1.21944 0.98778 0.96604 0.93944 0.90494 1.22616 0.98469 0.92314 0.86964 1.87847 1.51756 1.63055 1.27795 1.21961 0.92591 0.97507 0.86318 1.22138 0.98914 1.00074 0.95863 1.22974 1.02948 1.02111 0.93308 1.23075 1.01395 0.93758 1.03197 1.22853 1.00173 0.95845 0.90125 0.93310 0.92359 0.92298 0.93453 0.93424 0.97350 0.94997 0.93203 0.93432 0.89681 0.90693 0.91428 0.93551 0.92410 0.93144 0.93120 0.86965 0.88501 0.88681 0.88540 0.88643 0.93491 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 8.18 37.15 0.30 -2.31 16 2 C 0.07 1.25 2.27 -67.71 -0.15 1.09 16 3 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 4 C -0.10 -2.08 4.63 -26.73 -0.12 -2.21 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.65 13.29 55.43 0.74 -26.92 16 10 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 14 N -0.49 -8.40 4.69 -222.39 -1.04 -9.44 16 15 C 0.03 0.42 5.57 -1.80 -0.01 0.41 16 16 C -0.11 -1.49 6.49 -24.78 -0.16 -1.65 16 17 C -0.09 -1.17 3.26 -89.26 -0.29 -1.47 16 18 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 19 C 0.07 0.87 5.01 37.16 0.19 1.06 16 20 O -0.39 -4.75 10.20 -35.23 -0.36 -5.11 16 21 C 0.09 0.93 6.22 37.16 0.23 1.17 16 22 C -0.15 -1.36 6.06 -90.62 -0.55 -1.91 16 23 C -0.18 -1.27 10.25 -26.73 -0.27 -1.54 16 24 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 25 C 0.04 0.53 6.10 -2.75 -0.02 0.52 16 26 H 0.05 0.62 6.28 -51.93 -0.33 0.30 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 29 H 0.05 0.99 7.09 -51.93 -0.37 0.62 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.05 0.67 5.46 -51.93 -0.28 0.39 16 35 H 0.08 1.44 7.64 -51.93 -0.40 1.04 16 36 H 0.07 1.10 7.79 -51.93 -0.40 0.70 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.74 8.03 -51.93 -0.42 0.33 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.50 7.87 -51.93 -0.41 0.09 16 42 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 46 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.61 6.01 -51.93 -0.31 0.29 16 48 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -31.25 372.45 -10.83 -42.08 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -9.08 Total: -1.67 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -1.68 Total: -21.76 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.31 Total: -36.36 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.36 Total: -5.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.25 -10.83 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.388 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds