Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46645 * 2 1 4 4 C 1.52999 * 109.47056 * 119.99577 * 2 1 3 5 5 C 1.52996 * 109.47096 * 185.00116 * 4 2 1 6 6 C 1.50696 * 109.47316 * 180.02562 * 5 4 2 7 7 H 1.07995 * 119.99888 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00264 * 179.72621 * 6 5 4 9 9 N 1.31516 * 119.99616 * 0.27098 * 8 6 5 10 10 Si 1.86800 * 120.00212 * 180.27381 * 8 6 5 11 11 H 1.48498 * 109.46873 * 59.99845 * 10 8 6 12 12 H 1.48504 * 109.46984 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46954 * 299.99931 * 10 8 6 14 14 N 1.46897 * 109.47006 * 239.99964 * 2 1 3 15 15 C 1.48531 * 111.00069 * 310.91672 * 14 2 1 16 16 C 1.54945 * 103.22448 * 159.72125 * 15 14 2 17 17 C 1.54597 * 102.92201 * 322.58654 * 16 15 14 18 18 H 1.09000 * 110.39206 * 262.99629 * 17 16 15 19 19 C 1.53001 * 110.30463 * 140.87131 * 17 16 15 20 20 O 1.42900 * 109.46814 * 69.28768 * 19 17 16 21 21 C 1.42907 * 113.99819 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.46922 * 179.97438 * 21 20 19 23 23 C 1.53010 * 117.49605 * 243.74516 * 22 21 20 24 24 C 1.52997 * 117.49460 * 175.09075 * 22 21 20 25 25 C 1.47906 * 111.00207 * 68.31623 * 14 2 1 26 26 H 1.09003 * 109.47356 * 307.55148 * 1 2 3 27 27 H 1.09001 * 109.47186 * 67.55161 * 1 2 3 28 28 H 1.09002 * 109.47413 * 187.55382 * 1 2 3 29 29 H 1.09003 * 109.46847 * 65.00457 * 4 2 1 30 30 H 1.08997 * 109.47333 * 305.00729 * 4 2 1 31 31 H 1.09007 * 109.47286 * 60.00043 * 5 4 2 32 32 H 1.09006 * 109.46967 * 300.00390 * 5 4 2 33 33 H 0.96999 * 120.00087 * 179.97438 * 9 8 6 34 34 H 1.08999 * 110.66583 * 278.15854 * 15 14 2 35 35 H 1.09001 * 110.66706 * 41.29227 * 15 14 2 36 36 H 1.08994 * 110.71906 * 204.22694 * 16 15 14 37 37 H 1.09003 * 110.87379 * 81.01658 * 16 15 14 38 38 H 1.09000 * 109.47014 * 189.28026 * 19 17 16 39 39 H 1.08994 * 109.47510 * 309.28075 * 19 17 16 40 40 H 1.08993 * 109.47367 * 300.00132 * 21 20 19 41 41 H 1.09006 * 109.46763 * 59.99526 * 21 20 19 42 42 H 1.08997 * 115.55281 * 29.41974 * 22 21 20 43 43 H 1.08990 * 117.49691 * 0.02562 * 23 22 21 44 44 H 1.09001 * 117.49506 * 145.02273 * 23 22 21 45 45 H 1.09012 * 117.49780 * 214.97673 * 24 22 21 46 46 H 1.08998 * 117.50211 * 359.97154 * 24 22 21 47 47 H 1.09008 * 109.91325 * 333.50824 * 25 14 2 48 48 H 1.08999 * 109.91301 * 94.59728 * 25 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0672 -1.3240 2.5439 7 1 3.3687 -1.8043 3.2130 8 6 5.4189 -1.3655 2.8124 9 7 6.2694 -0.7801 1.9978 10 14 6.0423 -2.2532 4.3332 11 1 5.6451 -3.6827 4.2696 12 1 7.5227 -2.1524 4.3933 13 1 5.4546 -1.6296 5.5461 14 7 2.0196 -0.6925 -1.1994 15 6 1.3408 -2.0022 -1.3723 16 6 1.5597 -2.3196 -2.8730 17 6 1.4294 -0.9322 -3.5424 18 1 0.4213 -0.7917 -3.9322 19 6 2.4575 -0.7862 -4.6660 20 8 2.1087 -1.6540 -5.7464 21 6 3.0097 -1.5941 -6.8541 22 6 2.5412 -2.5590 -7.9452 23 6 3.4611 -3.7308 -8.2944 24 6 3.3116 -2.5583 -9.2670 25 6 1.7153 0.0838 -2.4211 26 1 -0.3634 0.6263 0.8147 27 1 -0.3633 0.3924 -0.9498 28 1 -0.3634 -1.0187 0.1351 29 1 1.7517 -1.7715 1.2056 30 1 1.6053 -0.2617 2.1370 31 1 3.8532 0.4372 1.3574 32 1 3.9994 -1.0727 0.4260 33 1 7.2204 -0.8090 2.1868 34 1 1.8071 -2.7628 -0.7461 35 1 0.2774 -1.9169 -1.1483 36 1 0.7901 -2.9987 -3.2398 37 1 2.5525 -2.7372 -3.0408 38 1 2.4675 0.2456 -5.0175 39 1 3.4459 -1.0518 -4.2910 40 1 3.0308 -0.5791 -7.2508 41 1 4.0097 -1.8763 -6.5247 42 1 1.4661 -2.7326 -7.9893 43 1 4.3996 -3.8144 -7.7466 44 1 2.9910 -4.6752 -8.5686 45 1 2.7432 -2.7319 -10.1809 46 1 4.1518 -1.8701 -9.3596 47 1 0.8384 0.7096 -2.2545 48 1 2.5697 0.7057 -2.6882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = -32.693601 kcal Electronic energy + Delta-G solvation = -22298.779984 eV Core-core repulsion = 19160.954078 eV Total energy + Delta-G solvation = -3137.825905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.51991 -38.41738 -36.75754 -34.71489 -32.76692 -30.38742 -29.43411 -28.49284 -27.21372 -25.25985 -24.29904 -22.68045 -22.39119 -21.03781 -20.86686 -19.87689 -18.89559 -17.02665 -16.38527 -16.06997 -15.74629 -15.62912 -14.91415 -14.56216 -14.43368 -13.95976 -13.81836 -13.40977 -13.07865 -12.60985 -12.54557 -12.29978 -11.84663 -11.83247 -11.78583 -11.45083 -11.38753 -11.25193 -10.99107 -10.91673 -10.80244 -10.72382 -10.63801 -10.44777 -10.42831 -10.29162 -10.07781 -9.61104 -9.55695 -9.16791 -8.87307 -8.21262 -7.79387 -5.86373 -3.87650 3.27569 3.39703 3.43789 3.46379 3.63616 4.39997 4.51009 4.55555 4.59898 4.69973 4.76709 4.86236 5.05936 5.13009 5.23604 5.31250 5.33463 5.39199 5.45362 5.48804 5.49902 5.52605 5.58639 5.59802 5.66184 5.72326 5.75335 5.79805 5.90392 5.95153 6.06732 6.13196 6.22095 6.29847 6.34309 6.45607 6.48483 6.69938 6.89118 7.13425 7.31946 7.40210 7.59579 7.86821 8.09911 8.25184 8.59495 9.21226 9.74744 11.24647 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017114 B = 0.003166 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.728754 B = 8842.140533 C = 9963.237477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.076 0.924 4 C -0.099 4.099 5 C 0.030 3.970 6 C -0.519 4.519 7 H 0.050 0.950 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.494 5.494 15 C 0.027 3.973 16 C -0.110 4.110 17 C -0.093 4.093 18 H 0.077 0.923 19 C 0.073 3.927 20 O -0.385 6.385 21 C 0.093 3.907 22 C -0.152 4.152 23 C -0.177 4.177 24 C -0.176 4.176 25 C 0.038 3.962 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.008 0.992 32 H 0.032 0.968 33 H 0.258 0.742 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.047 0.953 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 -0.810 -19.383 21.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.037 4.037 3 H 0.094 0.906 4 C -0.137 4.137 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.217 5.217 15 C -0.100 4.100 16 C -0.148 4.148 17 C -0.112 4.112 18 H 0.095 0.905 19 C -0.004 4.004 20 O -0.305 6.305 21 C 0.016 3.984 22 C -0.170 4.170 23 C -0.214 4.214 24 C -0.213 4.213 25 C -0.090 4.090 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.130 0.870 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.065 0.935 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.532 -0.945 -19.319 21.563 hybrid contribution -0.210 -0.117 0.765 0.802 sum -9.742 -1.062 -18.553 20.982 Atomic orbital electron populations 1.22518 0.98867 1.01884 1.01146 1.21995 0.91132 0.98695 0.91861 0.90591 1.21648 1.00738 0.98266 0.93014 1.18991 0.88135 0.96609 0.96978 1.21308 0.91805 1.34093 1.08527 0.93190 1.24997 0.97135 0.95799 0.96477 1.69971 1.02173 1.44316 1.36970 0.86747 0.77577 0.80326 0.83829 1.20380 1.21402 1.20426 1.64986 1.53535 1.02409 1.00816 1.23358 0.97343 0.93108 0.96214 1.22480 1.02434 0.95591 0.94342 1.21938 0.98812 0.96578 0.93913 0.90453 1.22621 0.98342 0.92719 0.86680 1.87848 1.51087 1.64649 1.26887 1.21962 0.92570 0.97643 0.86209 1.22138 0.99010 1.00219 0.95622 1.23088 1.01561 0.93488 1.03289 1.22984 1.02902 1.02019 0.93435 1.22852 1.00186 0.95830 0.90134 0.92359 0.93308 0.92298 0.93454 0.93421 0.97354 0.94998 0.93200 0.89675 0.93386 0.91463 0.90697 0.93537 0.92413 0.93136 0.93124 0.86970 0.88539 0.88641 0.88502 0.88675 0.93521 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 8.18 37.16 0.30 -2.31 16 2 C 0.07 1.25 2.27 -67.71 -0.15 1.09 16 3 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 4 C -0.10 -2.08 4.63 -26.73 -0.12 -2.21 16 5 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 6 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 7 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.65 13.29 55.43 0.74 -26.91 16 10 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 N -0.49 -8.40 4.69 -222.49 -1.04 -9.44 16 15 C 0.03 0.42 5.56 -1.89 -0.01 0.41 16 16 C -0.11 -1.49 6.51 -24.86 -0.16 -1.66 16 17 C -0.09 -1.17 3.26 -89.26 -0.29 -1.46 16 18 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 19 C 0.07 0.87 5.02 37.16 0.19 1.06 16 20 O -0.39 -4.75 10.23 -35.23 -0.36 -5.11 16 21 C 0.09 0.93 6.22 37.16 0.23 1.16 16 22 C -0.15 -1.36 6.05 -90.62 -0.55 -1.91 16 23 C -0.18 -1.42 10.18 -26.69 -0.27 -1.69 16 24 C -0.18 -1.26 10.25 -26.70 -0.27 -1.54 16 25 C 0.04 0.53 6.09 -2.75 -0.02 0.52 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.62 6.28 -51.93 -0.33 0.30 16 28 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 29 H 0.05 0.99 7.09 -51.93 -0.37 0.62 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 32 H 0.03 0.91 7.75 -51.93 -0.40 0.51 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 1.44 7.65 -51.93 -0.40 1.04 16 35 H 0.05 0.68 5.46 -51.93 -0.28 0.39 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.10 7.76 -51.93 -0.40 0.69 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.74 7.99 -51.93 -0.42 0.33 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.50 7.87 -51.93 -0.41 0.09 16 42 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.10 0.77 8.03 -51.93 -0.42 0.36 16 44 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.60 6.01 -51.92 -0.31 0.29 16 48 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -31.24 372.45 -10.83 -42.07 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -9.08 Total: -1.68 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.68 Total: -21.75 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.31 Total: -36.35 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.36 Total: -5.11 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.24 -10.83 -42.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.381 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds