Wall clock time and date at job start Tue Mar 31 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99677 * 2 1 4 4 H 1.08997 * 109.02102 * 28.93125 * 3 2 1 5 5 C 1.52824 * 109.03143 * 269.99534 * 3 2 1 6 6 C 1.53326 * 108.10595 * 180.57096 * 5 3 2 7 7 C 1.52590 * 108.41283 * 64.10232 * 6 5 3 8 8 C 1.53008 * 111.04131 * 297.65409 * 7 6 5 9 9 H 1.09001 * 112.06343 * 286.77734 * 8 7 6 10 10 C 1.55343 * 106.42805 * 162.94386 * 8 7 6 11 11 N 1.47590 * 106.92587 * 268.45075 * 10 8 7 12 12 C 1.46901 * 110.99930 * 121.24755 * 11 10 8 13 13 H 1.09007 * 109.46455 * 59.64313 * 12 11 10 14 14 C 1.52998 * 109.47484 * 299.64459 * 12 11 10 15 15 C 1.52995 * 109.47361 * 179.63809 * 12 11 10 16 16 C 1.53008 * 109.47392 * 295.20843 * 15 12 11 17 17 C 1.50697 * 109.47134 * 175.23573 * 16 15 12 18 18 H 1.07995 * 120.00352 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99605 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00595 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99786 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46840 * 60.00055 * 21 19 17 23 23 H 1.48507 * 109.47152 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47176 * 299.99901 * 21 19 17 25 25 C 1.48241 * 108.56609 * 358.99105 * 11 10 8 26 26 C 1.50757 * 108.96697 * 147.81814 * 3 2 1 27 27 H 1.09002 * 109.26074 * 294.35295 * 26 3 2 28 28 H 1.08997 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46911 * 300.00175 * 1 2 3 30 30 H 1.08998 * 109.47109 * 59.99661 * 1 2 3 31 31 H 1.09001 * 109.73849 * 300.22806 * 5 3 2 32 32 H 1.09009 * 109.73111 * 60.91984 * 5 3 2 33 33 H 1.09001 * 109.67593 * 183.83743 * 6 5 3 34 34 H 1.09005 * 109.67427 * 304.37462 * 6 5 3 35 35 H 1.09007 * 109.16179 * 177.25571 * 7 6 5 36 36 H 1.08995 * 109.12201 * 58.03032 * 7 6 5 37 37 H 1.08998 * 109.96821 * 27.82183 * 10 8 7 38 38 H 1.09001 * 109.97050 * 149.05139 * 10 8 7 39 39 H 1.08998 * 109.47118 * 63.97306 * 14 12 11 40 40 H 1.09000 * 109.47250 * 183.97613 * 14 12 11 41 41 H 1.08998 * 109.46758 * 303.97245 * 14 12 11 42 42 H 1.09004 * 109.47203 * 55.20346 * 15 12 11 43 43 H 1.08996 * 109.47541 * 175.20843 * 15 12 11 44 44 H 1.08996 * 109.46999 * 295.23935 * 16 15 12 45 45 H 1.09005 * 109.46491 * 55.23509 * 16 15 12 46 46 H 0.96993 * 120.00594 * 180.02562 * 20 19 17 47 47 H 1.08997 * 110.51494 * 218.03526 * 25 11 10 48 48 H 1.08997 * 110.52043 * 95.29868 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3308 1.9968 0.4985 5 6 2.2130 1.7607 -1.4447 6 6 2.8497 3.1553 -1.4200 7 6 4.2322 3.0427 -0.7841 8 6 4.1328 2.5617 0.6651 9 1 3.7525 3.3381 1.3290 10 6 5.5513 2.0688 1.0626 11 7 5.6070 0.6265 0.7547 12 6 6.6853 0.3329 -0.1987 13 1 7.6403 0.6420 0.2265 14 6 6.4363 1.0959 -1.5013 15 6 6.7174 -1.1695 -0.4859 16 6 7.0846 -1.9255 0.7927 17 6 7.0021 -3.4089 0.5405 18 1 6.7159 -3.7759 -0.4340 19 6 7.2909 -4.2976 1.5543 20 7 7.6389 -3.8508 2.7413 21 14 7.1880 -6.1364 1.2419 22 1 8.1334 -6.5081 0.1587 23 1 7.5445 -6.8701 2.4828 24 1 5.8048 -6.4929 0.8356 25 6 4.2916 0.2082 0.2139 26 6 3.3118 1.2624 0.7593 27 1 3.1096 1.0411 1.8073 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 2.8731 1.0637 -1.9611 32 1 1.2508 1.8043 -1.9553 33 1 2.9435 3.5340 -2.4377 34 1 2.2292 3.8316 -0.8319 35 1 4.7160 4.0193 -0.8046 36 1 4.8316 2.3344 -1.3559 37 1 6.3062 2.6022 0.4850 38 1 5.7161 2.2291 2.1281 39 1 6.4837 2.1678 -1.3092 40 1 7.1971 0.8239 -2.2329 41 1 5.4506 0.8396 -1.8897 42 1 5.7357 -1.4945 -0.8308 43 1 7.4601 -1.3765 -1.2563 44 1 8.0997 -1.6634 1.0909 45 1 6.3906 -1.6529 1.5879 46 1 7.8424 -4.4759 3.4544 47 1 4.0268 -0.7843 0.5785 48 1 4.3036 0.2254 -0.8759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:18 Heat of formation + Delta-G solvation = -51.179690 kcal Electronic energy + Delta-G solvation = -24122.700989 eV Core-core repulsion = 20984.073467 eV Total energy + Delta-G solvation = -3138.627522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79168 -37.98048 -35.84911 -33.58336 -32.38116 -31.07298 -29.62067 -28.55563 -27.06683 -26.37151 -25.11166 -23.27234 -22.23978 -21.56876 -20.47020 -19.18540 -18.50119 -16.52195 -16.15529 -15.90967 -15.79147 -15.35571 -14.79551 -14.49199 -14.34711 -13.84848 -13.54733 -13.30944 -12.92165 -12.74400 -12.70587 -12.42403 -11.97955 -11.89696 -11.75252 -11.49970 -11.39275 -11.29451 -11.10779 -10.90762 -10.77029 -10.63535 -10.39902 -10.38764 -10.17781 -10.08107 -10.02397 -9.53716 -9.42840 -9.10599 -8.81544 -8.16117 -7.63285 -5.81934 -3.82996 3.43071 3.46867 3.49714 3.67367 4.37107 4.52185 4.59555 4.67193 4.80913 4.95340 5.03107 5.14377 5.18541 5.23097 5.28391 5.33185 5.45798 5.48734 5.53307 5.57056 5.58340 5.62961 5.65539 5.74647 5.76322 5.82412 5.88615 5.94093 6.04440 6.10917 6.18598 6.21771 6.28536 6.40755 6.46392 6.52332 6.65405 6.74294 6.98842 7.20382 7.36476 7.54089 7.70091 7.91321 8.14351 8.30076 8.64011 9.25739 9.79199 11.29122 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.004855 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.456847 B = 5766.205147 C = 6631.182594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.377 6.377 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.142 4.142 6 C -0.114 4.114 7 C -0.144 4.144 8 C -0.097 4.097 9 H 0.083 0.917 10 C 0.042 3.958 11 N -0.508 5.508 12 C 0.076 3.924 13 H 0.076 0.924 14 C -0.194 4.194 15 C -0.103 4.103 16 C 0.029 3.971 17 C -0.517 4.517 18 H 0.049 0.951 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.886 3.114 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.278 1.278 25 C 0.059 3.941 26 C -0.094 4.094 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.008 0.992 45 H 0.033 0.967 46 H 0.258 0.742 47 H 0.087 0.913 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.034 16.620 -7.294 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.049 3.951 4 H 0.073 0.927 5 C -0.179 4.179 6 C -0.151 4.151 7 C -0.181 4.181 8 C -0.117 4.117 9 H 0.101 0.899 10 C -0.086 4.086 11 N -0.231 5.231 12 C -0.032 4.032 13 H 0.094 0.906 14 C -0.252 4.252 15 C -0.141 4.141 16 C -0.008 4.008 17 C -0.556 4.556 18 H 0.068 0.932 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.714 3.286 22 H -0.205 1.205 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.068 4.068 26 C -0.114 4.114 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.026 0.974 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.106 0.894 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.731 16.093 -6.646 20.994 hybrid contribution -0.441 -0.371 -0.833 1.013 sum -12.171 15.721 -7.478 21.242 Atomic orbital electron populations 1.22764 0.81720 1.02660 0.99393 1.88035 1.18997 1.27581 1.94994 1.21465 0.94245 0.84440 0.94934 0.92683 1.22096 1.01154 0.97360 0.97319 1.21456 0.96779 0.96345 1.00566 1.22139 0.97637 1.02045 0.96299 1.22322 0.96231 0.96421 0.96689 0.89906 1.23150 0.95024 0.89307 1.01168 1.63930 1.03573 1.13633 1.41990 1.21997 0.94529 0.97592 0.89119 0.90558 1.22845 1.01886 1.00222 1.00252 1.21715 1.00249 0.91158 1.00971 1.19006 0.96675 0.93132 0.91993 1.21296 1.45451 0.92119 0.96712 0.93231 1.24982 0.95687 0.98401 0.95256 1.69968 1.47167 1.34176 1.02126 0.86764 0.78391 0.86129 0.77298 1.20465 1.21419 1.20374 1.22855 0.86970 0.98980 0.97959 1.21485 0.93428 0.95764 1.00673 0.90083 0.89691 0.94342 0.94491 0.90723 0.92029 0.91899 0.92213 0.92222 0.89229 0.92508 0.91029 0.92543 0.92350 0.92089 0.93250 0.93561 0.97370 0.94814 0.93229 0.89438 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.80 101.05 1.09 1.41 16 2 O -0.38 -5.18 9.90 -35.23 -0.35 -5.53 16 3 C 0.11 1.28 2.30 -27.95 -0.06 1.21 16 4 H 0.06 0.58 7.74 -51.93 -0.40 0.18 16 5 C -0.14 -1.51 5.39 -26.65 -0.14 -1.65 16 6 C -0.11 -1.06 5.93 -26.77 -0.16 -1.22 16 7 C -0.14 -1.50 4.29 -26.94 -0.12 -1.62 16 8 C -0.10 -1.13 3.60 -88.86 -0.32 -1.45 16 9 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 10 C 0.04 0.58 5.94 -2.20 -0.01 0.56 16 11 N -0.51 -8.80 4.58 -222.81 -1.02 -9.82 16 12 C 0.08 1.34 2.25 -67.72 -0.15 1.19 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C -0.19 -2.72 7.16 37.16 0.27 -2.45 16 15 C -0.10 -2.21 4.49 -26.73 -0.12 -2.33 16 16 C 0.03 0.78 4.92 -27.88 -0.14 0.65 16 17 C -0.52 -15.27 9.11 -34.44 -0.31 -15.59 16 18 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.97 13.29 55.43 0.74 -27.24 16 21 Si 0.89 22.49 29.54 -169.99 -5.02 17.47 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.06 0.98 3.74 -2.61 -0.01 0.97 16 26 C -0.09 -1.28 2.53 -90.76 -0.23 -1.51 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 30 H 0.04 0.31 7.86 -51.93 -0.41 -0.09 16 31 H 0.07 0.91 6.80 -51.93 -0.35 0.56 16 32 H 0.06 0.59 7.86 -51.92 -0.41 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.04 2.65 -51.93 -0.14 0.90 16 37 H 0.06 0.73 5.79 -51.93 -0.30 0.43 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.70 5.10 -51.93 -0.27 0.43 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.85 4.88 -51.93 -0.25 0.60 16 42 H 0.05 1.07 6.89 -51.93 -0.36 0.71 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.03 0.98 7.62 -51.93 -0.40 0.58 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.09 1.75 8.13 -51.93 -0.42 1.32 16 48 H 0.05 0.83 3.61 -51.93 -0.19 0.65 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -31.71 345.16 -9.47 -41.18 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.50 Total: -1.06 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -0.52 Total: -20.21 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.28 Total: -37.06 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.35 Total: -5.53 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.71 -9.47 -41.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.996 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds