Wall clock time and date at job start Tue Mar 31 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99746 * 2 1 4 4 H 1.08999 * 108.01971 * 327.05049 * 3 2 1 5 5 C 1.51482 * 108.28509 * 84.10968 * 3 2 1 6 6 C 1.52672 * 110.82572 * 74.76811 * 5 3 2 7 7 C 1.53250 * 109.24602 * 59.74649 * 6 5 3 8 8 C 1.52905 * 109.46092 * 295.97895 * 7 6 5 9 9 H 1.09005 * 111.15443 * 288.79975 * 8 7 6 10 10 C 1.54787 * 107.42723 * 166.80874 * 8 7 6 11 11 N 1.47365 * 107.24439 * 262.39019 * 10 8 7 12 12 C 1.46896 * 111.00113 * 120.99736 * 11 10 8 13 13 H 1.09007 * 109.47529 * 59.18888 * 12 11 10 14 14 C 1.53001 * 109.47062 * 299.19179 * 12 11 10 15 15 C 1.53000 * 109.47276 * 179.18828 * 12 11 10 16 16 C 1.52999 * 109.47137 * 294.99116 * 15 12 11 17 17 C 1.50706 * 109.46629 * 175.28727 * 16 15 12 18 18 H 1.07998 * 120.00385 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99595 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00154 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99935 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46973 * 90.00452 * 21 19 17 23 23 H 1.48498 * 109.46930 * 210.00167 * 21 19 17 24 24 H 1.48498 * 109.47245 * 330.00004 * 21 19 17 25 25 C 1.47656 * 109.04713 * 358.40832 * 11 10 8 26 26 C 1.49597 * 108.27937 * 210.00511 * 3 2 1 27 27 H 1.09001 * 107.98716 * 38.06283 * 26 3 2 28 28 H 1.08998 * 109.47013 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46728 * 299.99882 * 1 2 3 30 30 H 1.08994 * 109.47448 * 60.00133 * 1 2 3 31 31 H 1.09006 * 109.20904 * 195.11397 * 5 3 2 32 32 H 1.09003 * 109.20544 * 314.42477 * 5 3 2 33 33 H 1.08999 * 109.61818 * 179.74653 * 6 5 3 34 34 H 1.09001 * 109.62004 * 300.10251 * 6 5 3 35 35 H 1.09000 * 110.17223 * 175.59386 * 7 6 5 36 36 H 1.09004 * 108.91569 * 55.59285 * 7 6 5 37 37 H 1.08993 * 109.89274 * 142.97866 * 10 8 7 38 38 H 1.09002 * 109.88983 * 21.79465 * 10 8 7 39 39 H 1.09005 * 109.47160 * 186.49286 * 14 12 11 40 40 H 1.08999 * 109.46958 * 306.48538 * 14 12 11 41 41 H 1.08992 * 109.47190 * 66.49592 * 14 12 11 42 42 H 1.09000 * 109.46684 * 54.99307 * 15 12 11 43 43 H 1.09000 * 109.47455 * 174.98739 * 15 12 11 44 44 H 1.08994 * 109.47117 * 295.28461 * 16 15 12 45 45 H 1.08992 * 109.47012 * 55.28624 * 16 15 12 46 46 H 0.96998 * 119.99860 * 180.02562 * 20 19 17 47 47 H 1.08994 * 110.24980 * 100.43930 * 25 11 10 48 48 H 1.09003 * 110.24438 * 222.44427 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3527 1.9672 -0.5638 5 6 2.0686 1.7997 1.4307 6 6 3.1850 1.0995 2.2017 7 6 4.5265 1.3836 1.5175 8 6 4.5238 0.7707 0.1167 9 1 4.5747 -0.3171 0.1631 10 6 5.7342 1.3582 -0.6487 11 7 5.2315 2.4723 -1.4720 12 6 5.9041 3.7306 -1.1223 13 1 6.9780 3.6236 -1.2761 14 6 5.6300 4.0645 0.3455 15 6 5.3716 4.8573 -2.0098 16 6 5.7552 4.5845 -3.4656 17 6 5.1333 5.6314 -4.3535 18 1 4.5248 6.4127 -3.9227 19 6 5.3401 5.5909 -5.7161 20 7 4.7978 6.5047 -6.4910 21 14 6.3920 4.2389 -6.4613 22 1 5.5333 3.0779 -6.8077 23 1 7.0553 4.7476 -7.6887 24 1 7.4234 3.8165 -5.4801 25 6 3.7706 2.5849 -1.2901 26 6 3.3248 1.2338 -0.7103 27 1 3.2159 0.5495 -1.5517 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 2.2515 2.8743 1.4318 32 1 1.1150 1.5985 1.9188 33 1 3.2123 1.4724 3.2256 34 1 3.0063 0.0242 2.2086 35 1 5.3431 0.9557 2.0991 36 1 4.6628 2.4624 1.4412 37 1 6.1749 0.5938 -1.2885 38 1 6.4773 1.7261 0.0589 39 1 6.0306 5.0521 0.5743 40 1 4.5549 4.0581 0.5249 41 1 6.1093 3.3215 0.9828 42 1 4.2861 4.9059 -1.9230 43 1 5.8042 5.8058 -1.6916 44 1 6.8398 4.6190 -3.5680 45 1 5.3938 3.5987 -3.7579 46 1 4.9431 6.4759 -7.4496 47 1 3.5382 3.3898 -0.5929 48 1 3.2837 2.7631 -2.2489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500300.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:24 Heat of formation + Delta-G solvation = -55.230550 kcal Electronic energy + Delta-G solvation = -24036.310350 eV Core-core repulsion = 20897.507169 eV Total energy + Delta-G solvation = -3138.803181 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 7.46 seconds Orbital eigenvalues (eV) -40.81696 -38.24618 -35.80952 -33.67576 -32.42932 -31.41006 -30.09421 -28.80294 -27.36672 -26.46775 -25.32514 -23.19383 -22.42620 -21.51407 -20.48946 -19.20539 -18.64490 -16.64722 -16.33772 -16.26925 -15.94364 -15.43562 -14.91405 -14.36633 -14.25285 -14.04011 -13.59626 -13.52630 -12.92463 -12.87865 -12.77532 -12.50188 -12.36347 -12.07462 -11.85160 -11.80920 -11.54094 -11.35606 -11.17185 -11.06745 -11.01496 -10.76942 -10.51510 -10.31870 -10.18430 -10.06458 -9.84116 -9.59015 -9.57504 -9.37907 -9.00018 -8.41576 -7.83710 -5.93743 -3.89920 3.41644 3.47729 3.55016 3.58566 4.24826 4.44563 4.57173 4.63960 4.69909 4.93253 5.04698 5.05904 5.12269 5.17564 5.20442 5.31546 5.42255 5.42903 5.45591 5.48630 5.49402 5.54454 5.58372 5.64221 5.70246 5.74113 5.86224 5.93478 5.93842 6.02401 6.11716 6.13603 6.23046 6.26296 6.36525 6.38221 6.42977 6.53016 6.75880 7.08593 7.09432 7.36521 7.48126 7.54636 7.72147 7.94822 8.66043 9.12028 9.70707 11.20044 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.004635 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.602463 B = 6039.044229 C = 6569.154448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.110 3.890 4 H 0.058 0.942 5 C -0.138 4.138 6 C -0.111 4.111 7 C -0.131 4.131 8 C -0.092 4.092 9 H 0.081 0.919 10 C 0.042 3.958 11 N -0.512 5.512 12 C 0.074 3.926 13 H 0.078 0.922 14 C -0.191 4.191 15 C -0.095 4.095 16 C -0.008 4.008 17 C -0.516 4.516 18 H 0.067 0.933 19 C 0.064 3.936 20 N -0.910 5.910 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.292 1.292 24 H -0.265 1.265 25 C 0.052 3.948 26 C -0.092 4.092 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.009 0.991 45 H 0.027 0.973 46 H 0.261 0.739 47 H 0.054 0.946 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.511 -12.821 18.653 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.052 3.948 4 H 0.076 0.924 5 C -0.175 4.175 6 C -0.149 4.149 7 C -0.169 4.169 8 C -0.112 4.112 9 H 0.099 0.901 10 C -0.086 4.086 11 N -0.235 5.235 12 C -0.035 4.035 13 H 0.096 0.904 14 C -0.249 4.249 15 C -0.132 4.132 16 C -0.045 4.045 17 C -0.554 4.554 18 H 0.085 0.915 19 C -0.136 4.136 20 N -0.550 5.550 21 Si 0.709 3.291 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.189 1.189 25 C -0.075 4.075 26 C -0.111 4.111 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.045 0.955 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.286 -13.018 17.920 22.560 hybrid contribution 0.067 -0.215 0.283 0.361 sum -4.219 -13.233 18.203 22.896 Atomic orbital electron populations 1.22770 0.81661 1.02422 0.99865 1.87960 1.19102 1.28348 1.95178 1.20918 0.94372 0.84412 0.95101 0.92430 1.21635 0.99482 1.00481 0.95933 1.21359 0.94503 1.00951 0.98050 1.22007 0.97025 1.02445 0.95377 1.21889 0.94470 1.00203 0.94589 0.90076 1.23060 0.96491 0.94202 0.94872 1.63522 1.03345 1.03970 1.52666 1.22050 0.98873 0.90208 0.92352 0.90403 1.22764 1.01722 1.01710 0.98728 1.21548 1.00016 0.94822 0.96863 1.19492 0.96021 0.97506 0.91516 1.21241 1.31016 1.11754 0.91434 0.91474 1.25018 0.95552 0.95727 0.97274 1.69932 1.45456 1.34994 1.04570 0.86748 0.81411 0.82474 0.78462 1.20368 1.21810 1.18912 1.22804 0.89053 0.95058 1.00628 1.20883 0.92716 0.99101 0.98442 0.89970 0.89931 0.94328 0.93994 0.91343 0.91687 0.92389 0.91668 0.92044 0.90412 0.91052 0.92356 0.92193 0.92166 0.92591 0.92784 0.92808 0.97273 0.95461 0.92977 0.92835 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.73 101.05 1.08 1.35 16 2 O -0.39 -4.59 10.10 -35.23 -0.36 -4.94 16 3 C 0.11 1.25 2.24 -29.18 -0.07 1.19 16 4 H 0.06 0.65 7.59 -51.93 -0.39 0.26 16 5 C -0.14 -1.37 5.51 -27.67 -0.15 -1.52 16 6 C -0.11 -1.07 5.87 -26.77 -0.16 -1.23 16 7 C -0.13 -1.35 4.63 -26.65 -0.12 -1.47 16 8 C -0.09 -1.07 3.27 -89.81 -0.29 -1.37 16 9 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 10 C 0.04 0.54 5.98 -2.63 -0.02 0.53 16 11 N -0.51 -8.09 4.56 -224.05 -1.02 -9.11 16 12 C 0.07 1.18 2.22 -67.71 -0.15 1.03 16 13 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 14 C -0.19 -2.47 7.23 37.16 0.27 -2.20 16 15 C -0.09 -1.88 4.47 -26.73 -0.12 -2.00 16 16 C -0.01 -0.19 3.98 -27.88 -0.11 -0.31 16 17 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 18 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.76 13.96 55.43 0.77 -27.98 16 21 Si 0.88 22.68 27.47 -169.99 -4.67 18.01 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 25 C 0.05 0.77 4.50 -3.08 -0.01 0.76 16 26 C -0.09 -1.17 2.23 -92.05 -0.21 -1.38 16 27 H 0.08 1.16 8.03 -51.93 -0.42 0.75 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.30 7.17 -51.92 -0.37 -0.07 16 30 H 0.04 0.36 8.05 -51.93 -0.42 -0.06 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.59 7.05 -51.93 -0.37 0.22 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.84 3.76 -51.93 -0.20 0.64 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.71 5.75 -51.93 -0.30 0.41 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.77 4.98 -51.93 -0.26 0.51 16 41 H 0.06 0.64 5.25 -51.93 -0.27 0.37 16 42 H 0.05 1.08 6.77 -51.93 -0.35 0.73 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.01 0.22 7.20 -51.93 -0.37 -0.15 16 45 H 0.03 0.68 7.05 -51.93 -0.37 0.31 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.05 0.76 5.12 -51.93 -0.27 0.49 16 48 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -31.50 344.45 -9.15 -40.65 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.59 Total: -1.64 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -0.49 Total: -20.18 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.25 Total: -37.09 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.36 Total: -4.94 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.50 -9.15 -40.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500300.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.577 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.46 seconds