Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00348 * 2 1 4 4 H 1.08998 * 108.05226 * 327.12447 * 3 2 1 5 5 C 1.51495 * 108.30203 * 84.23593 * 3 2 1 6 6 C 1.52649 * 110.90488 * 74.48194 * 5 3 2 7 7 C 1.52856 * 108.66434 * 59.76861 * 6 5 3 8 8 C 1.51699 * 109.46140 * 295.18652 * 7 6 5 9 9 H 1.08998 * 111.19299 * 290.12213 * 8 7 6 10 10 C 1.55053 * 106.95504 * 167.05098 * 8 7 6 11 11 N 1.47487 * 105.81776 * 273.70185 * 10 8 7 12 12 C 1.46908 * 111.00128 * 217.87487 * 11 10 8 13 13 H 1.08997 * 109.47017 * 64.85862 * 12 11 10 14 14 C 1.52996 * 109.47293 * 184.86267 * 12 11 10 15 15 C 1.53003 * 109.46796 * 304.86460 * 12 11 10 16 16 C 1.53000 * 109.47030 * 174.47542 * 15 12 11 17 17 C 1.50694 * 109.47314 * 185.42918 * 16 15 12 18 18 H 1.07998 * 120.00019 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00297 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99951 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00213 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46913 * 60.00139 * 21 19 17 23 23 H 1.48502 * 109.47107 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47302 * 300.00303 * 21 19 17 25 25 C 1.47555 * 108.97864 * 340.41665 * 11 10 8 26 26 C 1.49695 * 108.30727 * 210.00165 * 3 2 1 27 27 H 1.09000 * 107.65456 * 37.48568 * 26 3 2 28 28 H 1.09001 * 109.47341 * 59.99597 * 1 2 3 29 29 H 1.08998 * 109.47629 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46951 * 299.99308 * 1 2 3 31 31 H 1.08998 * 109.18812 * 194.84588 * 5 3 2 32 32 H 1.09003 * 109.19363 * 314.11182 * 5 3 2 33 33 H 1.09009 * 109.60321 * 179.52289 * 6 5 3 34 34 H 1.08999 * 109.60392 * 299.84181 * 6 5 3 35 35 H 1.08995 * 109.45114 * 55.11690 * 7 6 5 36 36 H 1.09006 * 109.44407 * 175.06042 * 7 6 5 37 37 H 1.09001 * 110.18182 * 154.61376 * 10 8 7 38 38 H 1.09000 * 110.18011 * 32.78854 * 10 8 7 39 39 H 1.09002 * 109.47208 * 299.99876 * 14 12 11 40 40 H 1.09002 * 109.47067 * 59.99526 * 14 12 11 41 41 H 1.08996 * 109.47197 * 179.97438 * 14 12 11 42 42 H 1.09003 * 109.47138 * 294.47199 * 15 12 11 43 43 H 1.08997 * 109.47449 * 54.47258 * 15 12 11 44 44 H 1.09001 * 109.47206 * 305.42770 * 16 15 12 45 45 H 1.09003 * 109.47140 * 65.42171 * 16 15 12 46 46 H 0.96995 * 120.00584 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.98366 * 118.79691 * 25 11 10 48 48 H 1.09004 * 109.98695 * 240.10105 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3526 1.9681 -0.5625 5 6 2.0718 1.7988 1.4310 6 6 3.1845 1.0941 2.2027 7 6 4.5169 1.3801 1.5105 8 6 4.5120 0.7568 0.1275 9 1 4.5482 -0.3310 0.1855 10 6 5.7228 1.3484 -0.6394 11 7 5.2430 2.6081 -1.2379 12 6 5.8160 2.8070 -2.5760 13 1 5.4548 2.0265 -3.2456 14 6 5.3936 4.1758 -3.1134 15 6 7.3423 2.7408 -2.4921 16 6 7.9339 2.8099 -3.9014 17 6 9.4260 2.6111 -3.8301 18 1 9.9045 2.4519 -2.8751 19 6 10.1803 2.6325 -4.9841 20 7 9.5976 2.8260 -6.1471 21 14 12.0300 2.3868 -4.8956 22 1 12.3249 1.0593 -4.2988 23 1 12.6042 2.4538 -6.2635 24 1 12.6312 3.4524 -4.0542 25 6 3.7687 2.5824 -1.2926 26 6 3.3259 1.2343 -0.7106 27 1 3.2142 0.5412 -1.5444 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.2596 2.8725 1.4321 32 1 1.1172 1.6024 1.9192 33 1 3.2153 1.4704 3.2254 34 1 2.9983 0.0201 2.2138 35 1 4.6560 2.4576 1.4221 36 1 5.3303 0.9563 2.0996 37 1 6.0460 0.6602 -1.4204 38 1 6.5433 1.5482 0.0498 39 1 4.3062 4.2229 -3.1731 40 1 5.7548 4.9563 -2.4437 41 1 5.8190 4.3235 -4.1059 42 1 7.7105 3.5801 -1.9020 43 1 7.6400 1.8053 -2.0185 44 1 7.4924 2.0283 -4.5196 45 1 7.7176 3.7846 -4.3389 46 1 10.1281 2.8414 -6.9589 47 1 3.3596 3.3981 -0.6964 48 1 3.4325 2.6707 -2.3257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = -68.979358 kcal Electronic energy + Delta-G solvation = -23320.986563 eV Core-core repulsion = 20181.587189 eV Total energy + Delta-G solvation = -3139.399374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63896 -38.15303 -36.01159 -33.83923 -32.38708 -31.39777 -30.00730 -28.33260 -27.39545 -26.45274 -24.96124 -23.19956 -22.45691 -21.36100 -20.89938 -19.17032 -18.72911 -16.53703 -16.45014 -16.18568 -15.74432 -15.39790 -14.79903 -14.46818 -14.19730 -14.10315 -13.55464 -13.48285 -13.05112 -12.91767 -12.47587 -12.24239 -12.23602 -12.07529 -11.92878 -11.56094 -11.42780 -11.24094 -11.15411 -11.07972 -10.96540 -10.69015 -10.53080 -10.40027 -10.29989 -10.16483 -10.04495 -9.63767 -9.58424 -9.25353 -8.98545 -8.29580 -7.94416 -5.96088 -3.97829 3.35940 3.39941 3.42798 3.52356 4.24361 4.42150 4.49709 4.53251 4.75100 4.96312 4.98658 5.03824 5.07052 5.11743 5.26884 5.35589 5.39387 5.39556 5.45349 5.57340 5.58916 5.60826 5.69476 5.72550 5.81576 5.87309 5.95542 5.99047 6.00612 6.10709 6.18938 6.27322 6.32521 6.36920 6.44921 6.49722 6.67027 6.80913 6.83099 7.02629 7.16538 7.37223 7.54109 7.73164 7.89196 8.04745 8.48573 9.09250 9.65784 11.15282 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.003317 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.702706 B = 8439.427764 C = 8727.352814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.112 3.888 4 H 0.054 0.946 5 C -0.137 4.137 6 C -0.113 4.113 7 C -0.110 4.110 8 C -0.085 4.085 9 H 0.082 0.918 10 C 0.048 3.952 11 N -0.523 5.523 12 C 0.076 3.924 13 H 0.036 0.964 14 C -0.140 4.140 15 C -0.103 4.103 16 C 0.023 3.977 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.891 3.109 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C 0.055 3.945 26 C -0.101 4.101 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.012 0.988 45 H 0.019 0.981 46 H 0.260 0.740 47 H 0.071 0.929 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 -2.845 14.512 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.054 3.946 4 H 0.072 0.928 5 C -0.174 4.174 6 C -0.151 4.151 7 C -0.147 4.147 8 C -0.104 4.104 9 H 0.101 0.899 10 C -0.080 4.080 11 N -0.247 5.247 12 C -0.031 4.031 13 H 0.054 0.946 14 C -0.197 4.197 15 C -0.141 4.141 16 C -0.014 4.014 17 C -0.557 4.557 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 C -0.074 4.074 26 C -0.120 4.120 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.176 -2.566 14.593 23.450 hybrid contribution 0.493 -0.617 -0.664 1.032 sum -17.683 -3.183 13.929 22.734 Atomic orbital electron populations 1.22761 0.81693 1.02483 0.99717 1.87977 1.19062 1.28399 1.95173 1.20959 0.94065 0.84247 0.95345 0.92841 1.21630 0.99496 1.00643 0.95673 1.21341 0.94785 1.00800 0.98159 1.21329 0.96735 1.01793 0.94881 1.21642 0.93788 0.99784 0.95212 0.89937 1.23088 0.97009 0.90039 0.97849 1.63470 1.04701 1.34006 1.22511 1.21987 0.97153 0.96801 0.87174 0.94649 1.21859 0.99389 0.96732 1.01742 1.21735 0.90584 1.00701 1.01049 1.19112 0.95055 0.97135 0.90100 1.21235 0.92779 1.48817 0.92855 0.92810 1.25018 0.98470 0.95442 0.95532 1.69953 1.35632 1.50280 0.97773 0.86677 0.85745 0.78731 0.76957 1.20282 1.21340 1.20247 1.22636 0.89402 0.95557 0.99761 1.21057 0.93486 0.98804 0.98654 0.90872 0.94228 0.89882 0.94261 0.91148 0.91932 0.92287 0.91693 0.90876 0.91974 0.93233 0.90135 0.94064 0.92303 0.91294 0.92773 0.93265 0.97003 0.96292 0.93024 0.91101 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.73 101.05 1.08 1.32 16 2 O -0.39 -4.31 10.09 -35.23 -0.36 -4.66 16 3 C 0.11 1.15 2.16 -29.13 -0.06 1.09 16 4 H 0.05 0.51 7.59 -51.93 -0.39 0.12 16 5 C -0.14 -1.26 5.48 -27.67 -0.15 -1.41 16 6 C -0.11 -1.09 5.89 -26.99 -0.16 -1.25 16 7 C -0.11 -1.19 4.82 -27.46 -0.13 -1.32 16 8 C -0.09 -1.03 3.33 -90.25 -0.30 -1.33 16 9 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 10 C 0.05 0.69 4.71 -2.42 -0.01 0.68 16 11 N -0.52 -7.96 4.97 -224.01 -1.11 -9.08 16 12 C 0.08 1.36 1.68 -67.71 -0.11 1.25 16 13 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 14 C -0.14 -2.34 8.89 37.16 0.33 -2.01 16 15 C -0.10 -2.18 4.52 -26.73 -0.12 -2.30 16 16 C 0.02 0.61 4.60 -27.89 -0.13 0.48 16 17 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.05 0.70 5.56 -3.27 -0.02 0.68 16 26 C -0.10 -1.20 2.19 -92.12 -0.20 -1.40 16 27 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 28 H 0.04 0.29 8.05 -51.93 -0.42 -0.13 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.27 7.18 -51.93 -0.37 -0.11 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.52 7.06 -51.93 -0.37 0.15 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.79 7.14 -51.93 -0.37 0.42 16 38 H 0.08 1.17 7.84 -51.93 -0.41 0.77 16 39 H 0.04 0.59 6.69 -51.93 -0.35 0.24 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.26 6.70 -51.93 -0.35 0.91 16 42 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.04 6.51 -51.93 -0.34 0.70 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.02 0.52 6.85 -51.93 -0.36 0.16 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 48 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 LS Contribution 357.82 15.07 5.39 5.39 Total: -1.00 -30.28 357.82 -9.83 -40.10 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -9.07 Total: -2.99 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -0.40 Total: -19.20 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.38 Total: -35.59 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.36 Total: -4.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.28 -9.83 -40.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.875 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds