Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00348 * 2 1 4 4 H 1.08998 * 108.05226 * 327.12447 * 3 2 1 5 5 C 1.51495 * 108.30203 * 84.23593 * 3 2 1 6 6 C 1.52649 * 110.90488 * 74.48194 * 5 3 2 7 7 C 1.52856 * 108.66434 * 59.76861 * 6 5 3 8 8 C 1.51699 * 109.46140 * 295.18652 * 7 6 5 9 9 H 1.08998 * 111.19299 * 290.12213 * 8 7 6 10 10 C 1.55053 * 106.95504 * 167.05098 * 8 7 6 11 11 N 1.47487 * 105.81776 * 273.70185 * 10 8 7 12 12 C 1.46908 * 111.00128 * 217.87487 * 11 10 8 13 13 H 1.08997 * 109.47017 * 64.85862 * 12 11 10 14 14 C 1.52996 * 109.47293 * 184.86267 * 12 11 10 15 15 C 1.53003 * 109.46796 * 304.86460 * 12 11 10 16 16 C 1.53000 * 109.47030 * 174.47542 * 15 12 11 17 17 C 1.50694 * 109.47314 * 185.42918 * 16 15 12 18 18 H 1.07998 * 120.00019 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00297 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99951 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00213 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46913 * 60.00139 * 21 19 17 23 23 H 1.48502 * 109.47107 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.47302 * 300.00303 * 21 19 17 25 25 C 1.47555 * 108.97864 * 340.41665 * 11 10 8 26 26 C 1.49695 * 108.30727 * 210.00165 * 3 2 1 27 27 H 1.09000 * 107.65456 * 37.48568 * 26 3 2 28 28 H 1.09001 * 109.47341 * 59.99597 * 1 2 3 29 29 H 1.08998 * 109.47629 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46951 * 299.99308 * 1 2 3 31 31 H 1.08998 * 109.18812 * 194.84588 * 5 3 2 32 32 H 1.09003 * 109.19363 * 314.11182 * 5 3 2 33 33 H 1.09009 * 109.60321 * 179.52289 * 6 5 3 34 34 H 1.08999 * 109.60392 * 299.84181 * 6 5 3 35 35 H 1.08995 * 109.45114 * 55.11690 * 7 6 5 36 36 H 1.09006 * 109.44407 * 175.06042 * 7 6 5 37 37 H 1.09001 * 110.18182 * 154.61376 * 10 8 7 38 38 H 1.09000 * 110.18011 * 32.78854 * 10 8 7 39 39 H 1.09002 * 109.47208 * 299.99876 * 14 12 11 40 40 H 1.09002 * 109.47067 * 59.99526 * 14 12 11 41 41 H 1.08996 * 109.47197 * 179.97438 * 14 12 11 42 42 H 1.09003 * 109.47138 * 294.47199 * 15 12 11 43 43 H 1.08997 * 109.47449 * 54.47258 * 15 12 11 44 44 H 1.09001 * 109.47206 * 305.42770 * 16 15 12 45 45 H 1.09003 * 109.47140 * 65.42171 * 16 15 12 46 46 H 0.96995 * 120.00584 * 179.97438 * 20 19 17 47 47 H 1.09001 * 109.98366 * 118.79691 * 25 11 10 48 48 H 1.09004 * 109.98695 * 240.10105 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3526 1.9681 -0.5625 5 6 2.0718 1.7988 1.4310 6 6 3.1845 1.0941 2.2027 7 6 4.5169 1.3801 1.5105 8 6 4.5120 0.7568 0.1275 9 1 4.5482 -0.3310 0.1855 10 6 5.7228 1.3484 -0.6394 11 7 5.2430 2.6081 -1.2379 12 6 5.8160 2.8070 -2.5760 13 1 5.4548 2.0265 -3.2456 14 6 5.3936 4.1758 -3.1134 15 6 7.3423 2.7408 -2.4921 16 6 7.9339 2.8099 -3.9014 17 6 9.4260 2.6111 -3.8301 18 1 9.9045 2.4519 -2.8751 19 6 10.1803 2.6325 -4.9841 20 7 9.5976 2.8260 -6.1471 21 14 12.0300 2.3868 -4.8956 22 1 12.3249 1.0593 -4.2988 23 1 12.6042 2.4538 -6.2635 24 1 12.6312 3.4524 -4.0542 25 6 3.7687 2.5824 -1.2926 26 6 3.3259 1.2343 -0.7106 27 1 3.2142 0.5412 -1.5444 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.2596 2.8725 1.4321 32 1 1.1172 1.6024 1.9192 33 1 3.2153 1.4704 3.2254 34 1 2.9983 0.0201 2.2138 35 1 4.6560 2.4576 1.4221 36 1 5.3303 0.9563 2.0996 37 1 6.0460 0.6602 -1.4204 38 1 6.5433 1.5482 0.0498 39 1 4.3062 4.2229 -3.1731 40 1 5.7548 4.9563 -2.4437 41 1 5.8190 4.3235 -4.1059 42 1 7.7105 3.5801 -1.9020 43 1 7.6400 1.8053 -2.0185 44 1 7.4924 2.0283 -4.5196 45 1 7.7176 3.7846 -4.3389 46 1 10.1281 2.8414 -6.9589 47 1 3.3596 3.3981 -0.6964 48 1 3.4325 2.6707 -2.3257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = -86.850895 kcal Electronic energy + Delta-G solvation = -23321.761531 eV Core-core repulsion = 20181.587189 eV Total energy + Delta-G solvation = -3140.174342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.63145 -39.16980 -37.18975 -35.47287 -34.05588 -32.33406 -31.55976 -29.64365 -28.48467 -27.28044 -26.71008 -24.48996 -23.54389 -22.47135 -22.33218 -20.66090 -19.66532 -18.56769 -17.28221 -17.11925 -16.95649 -16.47682 -16.32292 -16.00007 -15.23426 -15.13381 -14.79367 -14.68117 -14.31773 -14.06739 -13.99942 -13.58957 -13.43380 -13.21841 -13.12289 -12.84263 -12.75311 -12.68855 -12.46920 -12.35789 -12.20547 -12.12863 -11.92950 -11.84115 -11.50392 -11.35581 -11.28919 -11.16977 -11.00118 -10.89812 -10.53294 -10.38949 -9.21979 -8.19942 -6.30828 1.38935 1.42210 1.50093 2.40576 2.77220 3.01788 3.12834 3.51632 3.58621 3.86270 4.04213 4.07568 4.14648 4.18780 4.25299 4.33437 4.43089 4.47697 4.50757 4.56446 4.58218 4.66364 4.70381 4.74848 4.82180 4.83500 4.87855 4.93105 4.98322 4.98464 5.05807 5.09966 5.14791 5.20073 5.22218 5.29491 5.38384 5.39303 5.42208 5.51743 5.59663 5.77316 5.85881 6.11649 6.14485 6.29369 6.33214 6.85803 7.38012 8.91674 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.003317 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.702706 B = 8439.427764 C = 8727.352814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.112 3.888 4 H 0.064 0.936 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.105 4.105 8 C -0.079 4.079 9 H 0.080 0.920 10 C 0.045 3.955 11 N -0.522 5.522 12 C 0.086 3.914 13 H 0.020 0.980 14 C -0.133 4.133 15 C -0.088 4.088 16 C 0.031 3.969 17 C -0.544 4.544 18 H 0.057 0.943 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.266 1.266 25 C 0.055 3.945 26 C -0.094 4.094 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.052 0.948 43 H 0.046 0.954 44 H -0.016 1.016 45 H 0.000 1.000 46 H 0.264 0.736 47 H 0.089 0.911 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.235 -2.610 16.340 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.054 3.946 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.147 4.147 7 C -0.143 4.143 8 C -0.098 4.098 9 H 0.098 0.902 10 C -0.082 4.082 11 N -0.246 5.246 12 C -0.023 4.023 13 H 0.038 0.962 14 C -0.191 4.191 15 C -0.126 4.126 16 C -0.007 4.007 17 C -0.582 4.582 18 H 0.075 0.925 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.191 1.191 25 C -0.073 4.073 26 C -0.114 4.114 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.002 0.998 45 H 0.018 0.982 46 H 0.072 0.928 47 H 0.107 0.893 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.934 -2.333 16.438 25.183 hybrid contribution 0.680 -0.723 -1.256 1.601 sum -18.254 -3.055 15.182 23.939 Atomic orbital electron populations 1.22935 0.80089 1.03475 1.00660 1.87941 1.20883 1.28793 1.95355 1.20935 0.93019 0.84426 0.96171 0.91793 1.21630 0.99988 1.00876 0.94708 1.21308 0.93983 1.00509 0.98880 1.21277 0.97915 1.01128 0.93967 1.21591 0.92620 0.99649 0.95895 0.90151 1.23109 0.98195 0.89515 0.97420 1.63449 1.06381 1.34421 1.20368 1.21740 0.94839 0.97138 0.88557 0.96192 1.21773 1.01038 0.95915 1.00325 1.21488 0.93043 1.00372 0.97671 1.18972 0.94401 0.94882 0.92413 1.21677 0.94218 1.49098 0.93254 0.92480 1.25969 1.03920 0.94838 0.95024 1.70086 1.37721 1.50950 0.98549 0.85525 0.79171 0.79179 0.77334 1.19265 1.20704 1.19112 1.22699 0.87583 0.96765 1.00210 1.20996 0.94521 0.97632 0.98219 0.92690 0.93667 0.88999 0.92874 0.90422 0.90577 0.90789 0.92406 0.91486 0.91588 0.95363 0.90291 0.91356 0.91952 0.93579 0.92924 0.93549 0.99801 0.98212 0.92768 0.89277 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.73 113.37 1.22 1.55 16 2 O -0.41 -8.43 10.09 -148.98 -1.50 -9.93 16 3 C 0.11 2.08 2.16 29.04 0.06 2.15 16 4 H 0.06 1.05 7.59 -2.39 -0.02 1.04 16 5 C -0.13 -2.08 5.48 29.98 0.16 -1.92 16 6 C -0.11 -1.83 5.89 30.43 0.18 -1.65 16 7 C -0.11 -2.10 4.82 30.12 0.15 -1.95 16 8 C -0.08 -1.85 3.33 -10.55 -0.04 -1.88 16 9 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 10 C 0.05 1.32 4.71 86.89 0.41 1.73 16 11 N -0.52 -15.65 4.97 -862.64 -4.29 -19.94 16 12 C 0.09 3.09 1.68 44.91 0.08 3.17 16 13 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 14 C -0.13 -4.43 8.89 71.98 0.64 -3.79 16 15 C -0.09 -3.82 4.52 30.60 0.14 -3.69 16 16 C 0.03 1.68 4.60 29.85 0.14 1.81 16 17 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 19 C 0.00 0.01 5.46 84.65 0.46 0.47 16 20 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 21 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.06 1.34 5.56 86.30 0.48 1.82 16 26 C -0.09 -2.15 2.19 -11.77 -0.03 -2.18 16 27 H 0.05 1.45 8.01 -2.39 -0.02 1.43 16 28 H 0.04 0.56 8.05 -2.39 -0.02 0.54 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.57 7.18 -2.38 -0.02 0.56 16 31 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.00 7.06 -2.39 -0.02 0.98 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.06 1.07 8.13 -2.39 -0.02 1.05 16 35 H 0.07 1.44 7.89 -2.39 -0.02 1.42 16 36 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.03 0.93 7.14 -2.39 -0.02 0.91 16 38 H 0.08 2.30 7.84 -2.39 -0.02 2.28 16 39 H 0.07 1.88 6.69 -2.39 -0.02 1.87 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.73 6.70 -2.39 -0.02 1.72 16 42 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.05 2.01 6.51 -2.39 -0.02 2.00 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H 0.00 -0.03 6.85 -2.39 -0.02 -0.04 16 46 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.09 1.89 7.97 -2.39 -0.02 1.87 16 48 H 0.06 1.40 6.54 -2.39 -0.02 1.38 16 Total: -1.00 -65.63 357.82 1.69 -63.94 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.89 Total: 12.38 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 4.28 Total: -36.10 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -4.00 Total: -77.49 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.50 Total: -9.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.63 1.69 -63.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.912 kcal (2) G-P(sol) polarization free energy of solvation -65.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds