Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46962 * 2 1 4 4 C 1.53001 * 109.46737 * 119.99325 * 2 1 3 5 5 C 1.53002 * 109.46903 * 183.76007 * 4 2 1 6 6 C 1.50700 * 109.46987 * 175.93828 * 5 4 2 7 7 H 1.08002 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00141 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99580 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00308 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.46928 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47467 * 119.99848 * 10 8 6 13 13 H 1.48499 * 109.47126 * 240.00092 * 10 8 6 14 14 N 1.46900 * 109.47280 * 239.99633 * 2 1 3 15 15 C 1.46843 * 110.99702 * 308.77110 * 14 2 1 16 16 C 1.53059 * 109.52411 * 185.87117 * 15 14 2 17 17 C 1.53002 * 109.27332 * 300.96453 * 16 15 14 18 18 C 1.53056 * 109.59616 * 177.62846 * 17 16 15 19 19 C 1.53111 * 109.16209 * 176.84536 * 18 17 16 20 20 O 1.42902 * 109.41616 * 302.54641 * 19 18 17 21 21 C 1.42900 * 114.12618 * 61.17892 * 20 19 18 22 22 C 1.53079 * 109.55178 * 297.46088 * 17 16 15 23 23 C 1.53013 * 109.34870 * 57.51155 * 17 16 15 24 24 C 1.46843 * 110.99938 * 73.01838 * 14 2 1 25 25 H 1.08998 * 109.46960 * 300.00709 * 1 2 3 26 26 H 1.09007 * 109.46629 * 60.00333 * 1 2 3 27 27 H 1.08995 * 109.46962 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47253 * 303.76594 * 4 2 1 29 29 H 1.09004 * 109.46710 * 63.76534 * 4 2 1 30 30 H 1.09000 * 109.47207 * 295.94389 * 5 4 2 31 31 H 1.08999 * 109.46519 * 55.94395 * 5 4 2 32 32 H 0.97006 * 119.99447 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.46602 * 305.88319 * 15 14 2 34 34 H 1.09000 * 109.46807 * 65.85493 * 15 14 2 35 35 H 1.09001 * 109.50347 * 60.90454 * 16 15 14 36 36 H 1.08999 * 109.50915 * 181.02392 * 16 15 14 37 37 H 1.08998 * 109.52427 * 296.74825 * 18 17 16 38 38 H 1.09000 * 109.52440 * 56.93848 * 18 17 16 39 39 H 1.09005 * 109.48046 * 182.56609 * 19 18 17 40 40 H 1.08999 * 109.48530 * 62.53163 * 19 18 17 41 41 H 1.09003 * 109.48172 * 178.82469 * 21 20 19 42 42 H 1.08993 * 109.49390 * 58.78556 * 21 20 19 43 43 H 1.09000 * 109.52095 * 303.00752 * 22 17 16 44 44 H 1.08999 * 109.52434 * 63.20021 * 22 17 16 45 45 H 1.08998 * 109.50988 * 182.53585 * 23 17 16 46 46 H 1.09001 * 109.54054 * 62.42492 * 23 17 16 47 47 H 1.09009 * 109.46293 * 294.12257 * 24 14 2 48 48 H 1.09000 * 109.46759 * 54.09814 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5671 -0.6397 1.2976 6 6 4.0631 -1.2623 2.5772 7 1 3.3596 -1.6751 3.2851 8 6 5.4151 -1.3049 2.8443 9 7 6.2717 -0.8017 1.9826 10 14 6.0300 -2.0772 4.4301 11 1 4.8738 -2.5655 5.2237 12 1 6.9280 -3.2159 4.1105 13 1 6.7771 -1.0634 5.2172 14 7 2.0198 -0.6926 -1.1994 15 6 1.3858 -2.0093 -1.3423 16 6 2.0236 -2.7597 -2.5140 17 6 1.8449 -1.9418 -3.7947 18 6 2.5316 -2.6572 -4.9606 19 6 2.2799 -1.8716 -6.2506 20 8 0.8724 -1.7451 -6.4628 21 6 0.1865 -1.0400 -5.4262 22 6 0.3530 -1.7924 -4.1032 23 6 2.4690 -0.5579 -3.6036 24 6 1.8177 0.1280 -2.4002 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6226 -0.2477 2.1380 29 1 1.7327 -1.7664 1.2163 30 1 3.9866 -1.1757 0.4462 31 1 3.8766 0.4046 1.2578 32 1 7.2229 -0.8313 2.1707 33 1 1.5261 -2.5816 -0.4252 34 1 0.3199 -1.8808 -1.5305 35 1 3.0864 -2.9030 -2.3191 36 1 1.5405 -3.7297 -2.6314 37 1 3.6037 -2.7144 -4.7723 38 1 2.1243 -3.6632 -5.0615 39 1 2.7282 -2.4007 -7.0917 40 1 2.7253 -0.8804 -6.1654 41 1 -0.8727 -0.9698 -5.6737 42 1 0.6045 -0.0380 -5.3298 43 1 -0.1026 -2.7792 -4.1854 44 1 -0.1303 -1.2326 -3.3024 45 1 2.3037 0.0426 -4.4982 46 1 3.5397 -0.6619 -3.4277 47 1 0.7497 0.2464 -2.5838 48 1 2.2713 1.1079 -2.2512 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172501452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = -66.710788 kcal Electronic energy + Delta-G solvation = -23917.412233 eV Core-core repulsion = 20778.111232 eV Total energy + Delta-G solvation = -3139.301001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71529 -38.32656 -35.65215 -33.21690 -31.72155 -31.14085 -30.77849 -29.32546 -27.63314 -25.20316 -24.40300 -23.75519 -22.75159 -21.72990 -20.76814 -19.09106 -18.01195 -16.45500 -16.15149 -16.12214 -15.79634 -14.90426 -14.76272 -14.50482 -14.41654 -14.21194 -13.95143 -13.48708 -12.98625 -12.81663 -12.54564 -12.26311 -12.05667 -11.94370 -11.79927 -11.63920 -11.44742 -11.37150 -11.22998 -10.92519 -10.87516 -10.54558 -10.48599 -10.42134 -10.26352 -10.06011 -9.95637 -9.60695 -9.34163 -9.17476 -8.86020 -8.23124 -7.67427 -5.88326 -3.89547 3.35880 3.43334 3.47254 3.76249 4.25222 4.54067 4.58850 4.60381 4.72967 4.91587 5.08211 5.12887 5.20676 5.30281 5.38358 5.41323 5.45311 5.47196 5.50319 5.56424 5.60684 5.67111 5.69525 5.76123 5.79702 5.86406 5.87427 5.98748 6.05554 6.07883 6.19681 6.21744 6.29772 6.35968 6.40965 6.42178 6.55978 6.70922 6.89347 7.07442 7.31301 7.60473 7.64068 7.86103 8.08482 8.23362 8.57923 9.19872 9.73228 11.22613 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025184 B = 0.004041 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.551174 B = 6927.915068 C = 7498.772567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 H 0.075 0.925 4 C -0.101 4.101 5 C 0.032 3.968 6 C -0.518 4.518 7 H 0.051 0.949 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.885 3.115 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.515 5.515 15 C 0.055 3.945 16 C -0.104 4.104 17 C -0.056 4.056 18 C -0.144 4.144 19 C 0.059 3.941 20 O -0.386 6.386 21 C 0.060 3.940 22 C -0.147 4.147 23 C -0.109 4.109 24 C 0.056 3.944 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.009 0.991 32 H 0.257 0.743 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.028 0.972 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 -0.523 -15.247 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.093 0.907 4 C -0.139 4.139 5 C -0.005 4.005 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.239 5.239 15 C -0.073 4.073 16 C -0.142 4.142 17 C -0.057 4.057 18 C -0.182 4.182 19 C -0.017 4.017 20 O -0.305 6.305 21 C -0.016 4.016 22 C -0.185 4.185 23 C -0.147 4.147 24 C -0.072 4.072 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.027 0.973 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.046 0.954 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.297 -0.645 -15.376 19.091 hybrid contribution -0.273 -0.166 1.134 1.178 sum -11.569 -0.811 -14.242 18.367 Atomic orbital electron populations 1.22503 0.98988 1.01592 1.01153 1.21868 0.90975 0.98440 0.91352 0.90666 1.21699 1.00812 0.98174 0.93170 1.18969 0.88029 0.96821 0.96701 1.21398 0.91688 1.37868 1.04749 0.93117 1.24990 0.97131 0.95767 0.96474 1.69996 1.01831 1.46220 1.35317 0.86647 0.78808 0.79075 0.84113 1.19895 1.21139 1.21169 1.62010 1.57785 1.02485 1.01603 1.22112 0.95187 0.91108 0.98915 1.21618 1.02438 0.97214 0.92950 1.20511 0.94256 0.95939 0.94956 1.22220 1.01512 0.99728 0.94736 1.22612 0.81882 0.99584 0.97635 1.87892 1.20188 1.77255 1.45180 1.22597 0.97013 0.94631 0.87405 1.22311 0.96822 1.01550 0.97792 1.21723 1.01267 0.94793 0.96924 1.22073 0.97727 0.96892 0.90538 0.92387 0.93696 0.92605 0.93389 0.93537 0.95141 0.97307 0.93323 0.90142 0.95234 0.90564 0.92086 0.90568 0.91246 0.89241 0.92967 0.89416 0.93021 0.91344 0.90678 0.92087 0.90573 0.95426 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.40 37.16 0.31 -2.22 16 2 C 0.08 1.38 2.31 -67.71 -0.16 1.22 16 3 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 4 C -0.10 -2.08 4.58 -26.73 -0.12 -2.20 16 5 C 0.03 0.83 4.80 -27.88 -0.13 0.70 16 6 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 N -0.52 -8.30 4.05 -226.66 -0.92 -9.22 16 15 C 0.05 0.80 4.22 -3.82 -0.02 0.78 16 16 C -0.10 -1.37 4.89 -26.70 -0.13 -1.50 16 17 C -0.06 -0.64 0.51 -154.43 -0.08 -0.72 16 18 C -0.14 -1.50 4.92 -26.64 -0.13 -1.64 16 19 C 0.06 0.59 6.57 37.22 0.24 0.83 16 20 O -0.39 -4.44 10.76 -35.23 -0.38 -4.82 16 21 C 0.06 0.60 6.57 37.22 0.24 0.84 16 22 C -0.15 -1.54 4.33 -26.63 -0.12 -1.66 16 23 C -0.11 -1.33 4.32 -26.69 -0.12 -1.45 16 24 C 0.06 0.75 4.93 -3.82 -0.02 0.73 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.56 6.93 -51.93 -0.36 0.20 16 27 H 0.05 0.76 6.44 -51.93 -0.33 0.42 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.95 6.39 -51.93 -0.33 0.62 16 30 H 0.03 0.86 7.83 -51.93 -0.41 0.45 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 33 H 0.08 1.32 6.28 -51.93 -0.33 1.00 16 34 H 0.03 0.40 5.03 -51.93 -0.26 0.13 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.50 6.68 -51.93 -0.35 0.15 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.81 4.96 -51.93 -0.26 0.55 16 45 H 0.06 0.66 5.04 -51.93 -0.26 0.39 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.34 5.30 -51.92 -0.28 0.07 16 48 H 0.07 0.98 7.98 -51.93 -0.41 0.56 16 LS Contribution 343.85 15.07 5.18 5.18 Total: -1.00 -30.66 343.85 -9.55 -40.21 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.52 Total: -1.76 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -0.63 Total: -19.96 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.18 Total: -35.85 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.38 Total: -4.82 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.66 -9.55 -40.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172501452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.504 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds