Wall clock time and date at job start Tue Mar 31 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47413 * 2 1 4 4 C 1.53001 * 109.47216 * 239.99678 * 2 1 3 5 5 C 1.53005 * 109.46969 * 176.74253 * 4 2 1 6 6 C 1.50706 * 109.46875 * 180.02562 * 5 4 2 7 7 H 1.07997 * 120.00017 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99714 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99898 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00168 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47108 * 90.00385 * 10 8 6 12 12 H 1.48504 * 109.47477 * 210.00179 * 10 8 6 13 13 H 1.48497 * 109.47475 * 330.00356 * 10 8 6 14 14 N 1.46897 * 109.46949 * 119.99986 * 2 1 3 15 15 C 1.46899 * 111.00446 * 35.39043 * 14 2 1 16 16 C 1.53776 * 113.62063 * 166.92652 * 15 14 2 17 17 C 1.53780 * 87.08190 * 220.02031 * 16 15 14 18 18 C 1.53777 * 87.08056 * 25.43272 * 17 16 15 19 19 C 1.46900 * 111.00099 * 271.43366 * 14 2 1 20 20 C 1.53173 * 109.54475 * 290.03064 * 19 14 2 21 21 C 1.53097 * 109.16281 * 176.84900 * 20 19 14 22 22 O 1.42900 * 109.41342 * 302.38562 * 21 20 19 23 23 C 1.42906 * 114.09447 * 61.16164 * 22 21 20 24 24 C 1.53094 * 109.41477 * 298.83904 * 23 22 21 25 25 H 1.08997 * 109.47556 * 301.32612 * 1 2 3 26 26 H 1.09003 * 109.46972 * 61.33310 * 1 2 3 27 27 H 1.09005 * 109.47167 * 181.33087 * 1 2 3 28 28 H 1.08991 * 109.47494 * 296.74412 * 4 2 1 29 29 H 1.09003 * 109.46791 * 56.74802 * 4 2 1 30 30 H 1.09001 * 109.47181 * 299.99811 * 5 4 2 31 31 H 1.08993 * 109.46828 * 60.00485 * 5 4 2 32 32 H 0.96999 * 120.00507 * 180.02562 * 9 8 6 33 33 H 1.09000 * 112.84802 * 298.23648 * 15 14 2 34 34 H 1.09001 * 113.61309 * 334.56975 * 16 15 14 35 35 H 1.09002 * 113.61260 * 105.46693 * 16 15 14 36 36 H 1.09007 * 113.61475 * 270.88117 * 17 16 15 37 37 H 1.09001 * 113.61322 * 139.98365 * 17 16 15 38 38 H 1.09001 * 113.61137 * 220.02032 * 18 17 16 39 39 H 1.08994 * 113.69338 * 89.13033 * 18 17 16 40 40 H 1.09002 * 109.61875 * 169.80265 * 19 14 2 41 41 H 1.08992 * 109.52507 * 56.93795 * 20 19 14 42 42 H 1.09009 * 109.52279 * 296.75019 * 20 19 14 43 43 H 1.08988 * 109.48187 * 62.37306 * 21 20 19 44 44 H 1.09002 * 109.47571 * 182.39961 * 21 20 19 45 45 H 1.08996 * 109.48131 * 58.82355 * 23 22 21 46 46 H 1.09002 * 109.47744 * 178.86048 * 23 22 21 47 47 H 1.08998 * 109.52208 * 177.51474 * 24 23 22 48 48 H 1.08995 * 109.52503 * 297.70315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5679 -0.6507 -1.2908 6 6 4.0702 -1.3607 -2.5216 7 1 3.3698 -1.8162 -3.2059 8 6 5.4239 -1.4285 -2.7740 9 7 5.8622 -2.0476 -3.8483 10 14 6.6353 -0.6399 -1.5908 11 1 7.0309 -1.6284 -0.5556 12 1 7.8398 -0.1967 -2.3378 13 1 5.9984 0.5322 -0.9383 14 7 2.0196 -0.6925 1.1994 15 6 1.1410 -1.8148 1.5549 16 6 1.7517 -2.7703 2.5937 17 6 1.1428 -3.9219 1.7765 18 6 1.2025 -2.9847 0.5587 19 6 2.1627 0.2409 2.3247 20 6 3.3328 1.1921 2.0558 21 6 3.4249 2.2103 3.1954 22 8 2.1871 2.9163 3.3028 23 6 1.0645 2.0837 3.6006 24 6 0.8776 1.0604 2.4773 25 1 -0.3634 0.5343 0.8778 26 1 -0.3633 0.4930 -0.9017 27 1 -0.3634 -1.0274 0.0239 28 1 1.7252 -1.7644 -1.2205 29 1 1.6298 -0.2422 -2.1382 30 1 3.8827 0.3925 -1.3196 31 1 3.9780 -1.1297 -0.4018 32 1 6.8147 -2.0957 -4.0257 33 1 0.1259 -1.4983 1.7945 34 1 2.8417 -2.7685 2.6009 35 1 1.3207 -2.6659 3.5894 36 1 0.1282 -4.1824 2.0778 37 1 1.7963 -4.7902 1.6917 38 1 0.3281 -3.0535 -0.0884 39 1 2.1417 -3.0408 0.0085 40 1 2.3500 -0.3175 3.2419 41 1 3.1687 1.7142 1.1132 42 1 4.2604 0.6221 2.0008 43 1 3.6294 1.6907 4.1314 44 1 4.2293 2.9161 2.9881 45 1 1.2381 1.5624 4.5419 46 1 0.1683 2.6984 3.6851 47 1 0.0492 0.3963 2.7236 48 1 0.6638 1.5799 1.5432 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172505362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:46 Heat of formation + Delta-G solvation = -22.250492 kcal Electronic energy + Delta-G solvation = -24507.020368 eV Core-core repulsion = 21369.647310 eV Total energy + Delta-G solvation = -3137.373058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54296 -38.60157 -36.21686 -33.84458 -32.36165 -31.26597 -30.29711 -29.13031 -25.69275 -25.44258 -24.71921 -23.46232 -23.14540 -21.01736 -20.52901 -19.22973 -18.50881 -16.62571 -16.56474 -16.07129 -15.88881 -15.49661 -14.94583 -14.61731 -14.19078 -14.04713 -13.60647 -13.16204 -13.00522 -12.81443 -12.65723 -12.31838 -12.13121 -12.11880 -11.82365 -11.54643 -11.41005 -11.11178 -11.05533 -10.95733 -10.84212 -10.66223 -10.42780 -10.20787 -10.08484 -9.98047 -9.78964 -9.56358 -9.42000 -9.28770 -8.97181 -8.41488 -7.87295 -5.93170 -3.88744 3.39073 3.45571 3.51372 3.81111 4.09472 4.56219 4.67808 4.76913 4.82239 4.90940 4.94040 5.06953 5.09458 5.14761 5.23043 5.31980 5.36015 5.42930 5.48935 5.50775 5.59615 5.61468 5.66813 5.75438 5.83142 5.85917 5.98226 6.00759 6.07291 6.09405 6.21709 6.25259 6.26698 6.34209 6.40897 6.48840 6.61802 6.65324 6.85677 7.13325 7.16702 7.45149 7.53850 7.59526 7.76397 7.96171 8.67965 9.13638 9.71445 11.20841 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.006685 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.957152 B = 4187.577599 C = 5193.265963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.078 3.922 3 H 0.073 0.927 4 C -0.097 4.097 5 C -0.003 4.003 6 C -0.514 4.514 7 H 0.067 0.933 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.880 3.120 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.264 1.264 14 N -0.504 5.504 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.145 4.145 18 C -0.127 4.127 19 C 0.087 3.913 20 C -0.149 4.149 21 C 0.063 3.937 22 O -0.385 6.385 23 C 0.065 3.935 24 C -0.193 4.193 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.026 0.974 32 H 0.260 0.740 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 4.036 16.859 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.030 4.030 3 H 0.091 0.909 4 C -0.135 4.135 5 C -0.040 4.040 6 C -0.552 4.552 7 H 0.085 0.915 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.708 3.292 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.189 1.189 14 N -0.226 5.226 15 C -0.052 4.052 16 C -0.167 4.167 17 C -0.183 4.183 18 C -0.164 4.164 19 C -0.022 4.022 20 C -0.187 4.187 21 C -0.014 4.014 22 O -0.304 6.304 23 C -0.013 4.013 24 C -0.232 4.232 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.464 3.985 16.616 20.037 hybrid contribution -0.086 0.364 0.642 0.743 sum -10.550 4.349 17.258 20.689 Atomic orbital electron populations 1.22931 0.98312 1.02265 1.02033 1.21880 0.91699 0.98036 0.91358 0.90850 1.21640 0.98914 0.99800 0.93149 1.19437 0.91468 0.96041 0.97101 1.21266 0.92489 1.34355 1.07112 0.91488 1.25017 0.98460 0.95035 0.95107 1.69928 1.14234 1.44069 1.26768 0.86765 0.80583 0.80509 0.81333 1.20486 1.21895 1.18909 1.62558 1.48274 1.08669 1.03066 1.23109 0.94499 0.90238 0.97349 1.22957 1.01476 0.95771 0.96497 1.22747 1.00461 0.97285 0.97818 1.23132 1.03568 0.93878 0.95855 1.21669 0.93373 0.92354 0.94794 1.22280 0.99624 0.97194 0.99616 1.22611 0.86319 0.95179 0.97332 1.87915 1.16124 1.34477 1.91878 1.22516 0.89405 0.93063 0.96292 1.23262 0.99937 0.99178 1.00839 0.92070 0.92601 0.92099 0.91829 0.93319 0.97697 0.95607 0.93027 0.92015 0.89264 0.92584 0.90968 0.91285 0.92112 0.87522 0.90454 0.90478 0.89916 0.93424 0.88826 0.93599 0.89403 0.91189 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.60 7.50 37.16 0.28 -2.33 16 2 C 0.08 1.23 1.62 -67.71 -0.11 1.12 16 3 H 0.07 1.22 5.48 -51.93 -0.28 0.93 16 4 C -0.10 -1.91 4.49 -26.73 -0.12 -2.03 16 5 C 0.00 -0.07 3.91 -27.88 -0.11 -0.18 16 6 C -0.51 -14.84 9.66 -34.44 -0.33 -15.18 16 7 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 8 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 10 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 14 N -0.50 -7.41 3.67 -209.68 -0.77 -8.18 16 15 C 0.06 0.74 1.80 -66.90 -0.12 0.62 16 16 C -0.13 -1.56 6.94 -25.92 -0.18 -1.74 16 17 C -0.15 -1.72 8.08 -25.92 -0.21 -1.93 16 18 C -0.13 -1.80 5.24 -25.92 -0.14 -1.93 16 19 C 0.09 1.11 2.17 -67.53 -0.15 0.97 16 20 C -0.15 -2.04 5.49 -26.59 -0.15 -2.19 16 21 C 0.06 0.73 6.84 37.21 0.25 0.99 16 22 O -0.39 -4.93 10.77 -35.23 -0.38 -5.31 16 23 C 0.06 0.68 6.84 37.21 0.25 0.93 16 24 C -0.19 -2.16 3.56 -26.59 -0.09 -2.26 16 25 H 0.06 0.72 4.39 -51.93 -0.23 0.49 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.79 5.48 -51.93 -0.28 0.51 16 28 H 0.06 1.25 4.88 -51.93 -0.25 1.00 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.00 0.12 7.20 -51.93 -0.37 -0.26 16 31 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.06 0.76 5.70 -51.93 -0.30 0.46 16 34 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.83 7.55 -51.93 -0.39 0.44 16 39 H 0.11 1.87 6.97 -51.93 -0.36 1.51 16 40 H 0.08 0.95 7.29 -51.93 -0.38 0.57 16 41 H 0.08 1.19 6.41 -51.93 -0.33 0.86 16 42 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 43 H 0.05 0.49 8.14 -51.94 -0.42 0.07 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.72 6.56 -51.93 -0.34 0.38 16 48 H 0.09 1.07 5.12 -51.93 -0.27 0.81 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -30.90 342.24 -9.30 -40.20 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.40 Total: 1.69 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -1.01 Total: -23.35 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.00 Total: -36.08 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.38 Total: -5.31 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.90 -9.30 -40.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172505362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.946 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds