Wall clock time and date at job start Tue Mar 31 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.46938 * 2 1 4 4 C 1.46899 * 111.00035 * 294.38099 * 3 2 1 5 5 C 1.50693 * 109.47662 * 295.59388 * 4 3 2 6 6 H 1.08007 * 119.99988 * 354.97952 * 5 4 3 7 7 C 1.37879 * 120.00433 * 174.97891 * 5 4 3 8 8 N 1.31514 * 119.99621 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00294 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47171 * 60.00185 * 9 7 5 11 11 H 1.48500 * 109.47061 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47120 * 300.00350 * 9 7 5 13 13 C 1.46897 * 111.00153 * 58.34212 * 3 2 1 14 14 C 1.52997 * 109.46619 * 56.04348 * 13 3 2 15 15 C 1.53019 * 109.46582 * 180.02562 * 14 13 3 16 16 C 1.52927 * 109.45750 * 300.08282 * 15 14 13 17 17 C 1.53104 * 109.56049 * 180.12653 * 16 15 14 18 18 C 1.53105 * 109.15755 * 176.80860 * 17 16 15 19 19 O 1.42899 * 109.41675 * 302.48647 * 18 17 16 20 20 C 1.42903 * 114.12603 * 61.15923 * 19 18 17 21 21 C 1.53114 * 109.40121 * 298.82573 * 20 19 18 22 22 C 1.52945 * 109.58627 * 59.94159 * 16 15 14 23 23 C 1.52995 * 109.46865 * 176.07533 * 13 3 2 24 24 H 1.08999 * 109.47324 * 62.47818 * 1 2 3 25 25 H 1.09003 * 109.46978 * 182.47775 * 1 2 3 26 26 H 1.08993 * 109.47009 * 302.47442 * 1 2 3 27 27 H 1.09008 * 109.46765 * 240.00174 * 2 1 3 28 28 H 1.09000 * 109.47162 * 120.00234 * 2 1 3 29 29 H 1.09004 * 109.46938 * 55.59629 * 4 3 2 30 30 H 1.09003 * 109.47314 * 175.59090 * 4 3 2 31 31 H 0.97005 * 120.00018 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.45619 * 296.05838 * 13 3 2 33 33 H 1.09007 * 109.47177 * 300.00861 * 14 13 3 34 34 H 1.08995 * 109.47365 * 60.01390 * 14 13 3 35 35 H 1.09002 * 109.47168 * 60.07606 * 15 14 13 36 36 H 1.08994 * 109.47519 * 180.08759 * 15 14 13 37 37 H 1.09003 * 109.52479 * 296.71163 * 17 16 15 38 38 H 1.08995 * 109.52280 * 56.90299 * 17 16 15 39 39 H 1.08997 * 109.48455 * 182.49993 * 18 17 16 40 40 H 1.09004 * 109.48388 * 62.47058 * 18 17 16 41 41 H 1.09004 * 109.48741 * 178.85298 * 20 19 18 42 42 H 1.08993 * 109.48544 * 58.80601 * 20 19 18 43 43 H 1.08997 * 109.52064 * 297.64416 * 21 20 19 44 44 H 1.08995 * 109.52490 * 177.44626 * 21 20 19 45 45 H 1.08999 * 109.47324 * 180.02562 * 22 16 15 46 46 H 1.08990 * 109.47844 * 60.04741 * 22 16 15 47 47 H 1.08992 * 109.47215 * 299.97971 * 23 13 3 48 48 H 1.09008 * 109.46760 * 59.98120 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6613 2.0700 -1.2491 5 6 2.3625 1.4054 -2.4056 6 1 3.0718 0.6116 -2.2230 7 6 2.0986 1.8106 -3.6968 8 7 1.2353 2.7775 -3.9191 9 14 2.9684 0.9872 -5.1303 10 1 2.6480 -0.4629 -5.1369 11 1 2.5135 1.6009 -6.4038 12 1 4.4354 1.1694 -4.9899 13 6 1.5165 2.1212 1.1673 14 6 1.9085 1.3787 2.4463 15 6 1.3838 2.1453 3.6622 16 6 1.9897 3.5493 3.6796 17 6 1.4687 4.3174 4.8972 18 6 2.1415 5.6918 4.9498 19 8 3.5598 5.5248 4.9983 20 6 4.1084 4.8552 3.8612 21 6 3.5151 3.4469 3.7652 22 6 1.5989 4.2922 2.4011 23 6 2.1241 3.5253 1.1853 24 1 -0.3634 0.4749 -0.9113 25 1 -0.3633 -1.0267 0.0444 26 1 -0.3633 0.5517 0.8669 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8900 29 1 0.5829 2.0144 -1.3976 30 1 1.9666 3.1148 -1.1910 31 1 1.0499 3.0628 -4.8275 32 1 0.4305 2.1961 1.1090 33 1 1.4753 0.3784 2.4330 34 1 2.9943 1.3036 2.5046 35 1 0.2978 2.2189 3.6044 36 1 1.6643 1.6172 4.5735 37 1 0.3892 4.4433 4.8139 38 1 1.7027 3.7623 5.8055 39 1 1.8077 6.2261 5.8392 40 1 1.8728 6.2623 4.0607 41 1 5.1911 4.7870 3.9667 42 1 3.8654 5.4143 2.9578 43 1 3.7927 2.8737 4.6497 44 1 3.8976 2.9505 2.8734 45 1 2.0321 5.2923 2.4151 46 1 0.5133 4.3677 2.3420 47 1 3.2098 3.4506 1.2436 48 1 1.8446 4.0538 0.2738 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173049736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:54 Heat of formation + Delta-G solvation = -62.764807 kcal Electronic energy + Delta-G solvation = -24148.997051 eV Core-core repulsion = 21009.867161 eV Total energy + Delta-G solvation = -3139.129890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.62704 -38.15282 -35.98575 -32.73971 -31.88757 -30.98816 -30.85965 -29.00142 -27.37514 -25.50154 -23.81503 -23.64527 -22.76715 -21.81914 -20.82135 -18.78081 -18.07109 -16.53553 -16.13561 -16.00897 -15.40331 -14.84466 -14.77489 -14.55334 -14.33242 -14.09859 -13.58301 -13.39184 -13.10021 -12.56988 -12.38884 -12.13517 -11.96683 -11.79697 -11.73024 -11.56577 -11.30861 -11.30632 -11.15467 -10.86501 -10.82617 -10.66812 -10.56976 -10.23387 -10.09874 -10.01064 -9.97889 -9.74096 -9.44428 -9.19384 -9.07798 -8.38548 -7.09645 -6.00304 -4.00654 3.33888 3.38098 3.41015 3.86448 4.43032 4.56311 4.65225 4.77806 4.99520 5.00942 5.18832 5.21240 5.29269 5.34924 5.37245 5.47595 5.56281 5.60966 5.67878 5.76930 5.78472 5.80862 5.86137 5.89068 5.92483 5.98075 6.01145 6.08156 6.12104 6.20497 6.24239 6.28196 6.38491 6.47437 6.52757 6.59677 6.70678 6.79681 6.87521 6.98074 7.17990 7.40517 7.49599 7.85040 8.17126 8.28116 8.63524 9.07534 9.63130 11.10330 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.004377 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.332385 B = 6395.368406 C = 6924.940932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.059 3.941 3 N -0.532 5.532 4 C 0.187 3.813 5 C -0.505 4.505 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.087 3.913 14 C -0.114 4.114 15 C -0.103 4.103 16 C -0.055 4.055 17 C -0.145 4.145 18 C 0.059 3.941 19 O -0.387 6.387 20 C 0.058 3.942 21 C -0.147 4.147 22 C -0.111 4.111 23 C -0.113 4.113 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.053 0.947 29 H -0.003 1.003 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 2.078 16.965 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.069 4.069 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.022 4.022 14 C -0.151 4.151 15 C -0.141 4.141 16 C -0.055 4.055 17 C -0.182 4.182 18 C -0.017 4.017 19 O -0.306 6.306 20 C -0.018 4.018 21 C -0.184 4.184 22 C -0.148 4.148 23 C -0.151 4.151 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.015 0.985 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.666 2.239 16.982 17.142 hybrid contribution -0.803 -0.507 -1.232 1.555 sum -0.137 1.732 15.751 15.846 Atomic orbital electron populations 1.22380 0.99688 1.00603 1.01922 1.21993 0.91868 0.91776 1.01276 1.62357 1.58575 1.01529 1.03122 1.19795 0.94771 0.94447 0.84754 1.21142 1.23792 1.19142 0.90256 0.92085 1.24964 0.95393 0.95310 0.98876 1.69948 1.34497 1.28629 1.20877 0.86615 0.80042 0.79541 0.81524 1.20355 1.21438 1.20226 1.21484 0.96320 0.93366 0.91042 1.21668 1.01594 0.98377 0.93503 1.21539 0.99889 0.94523 0.98152 1.20506 0.95011 0.95535 0.94489 1.22235 1.00421 0.96930 0.98635 1.22582 0.81265 0.96158 1.01732 1.87883 1.20923 1.78381 1.43430 1.22647 0.98065 0.92380 0.88756 1.22321 0.95296 0.97617 1.03213 1.21693 1.00712 0.98414 0.94015 1.21655 1.01039 0.95174 0.97213 0.91708 0.93688 0.93644 0.90158 0.92885 0.98492 0.95156 0.92991 0.95175 0.92174 0.91249 0.92337 0.92382 0.91120 0.91353 0.89455 0.92962 0.89223 0.92733 0.91588 0.89457 0.92140 0.92236 0.91269 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.37 9.21 37.16 0.34 -3.03 16 2 C 0.06 1.14 5.38 -3.83 -0.02 1.12 16 3 N -0.53 -11.06 4.58 -228.09 -1.05 -12.11 16 4 C 0.19 4.74 4.33 -4.98 -0.02 4.72 16 5 C -0.50 -13.96 8.31 -34.44 -0.29 -14.25 16 6 H 0.06 1.68 7.22 -52.48 -0.38 1.30 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.09 1.49 1.38 -67.72 -0.09 1.40 16 14 C -0.11 -1.62 4.57 -26.72 -0.12 -1.74 16 15 C -0.10 -1.23 4.74 -26.76 -0.13 -1.36 16 16 C -0.06 -0.64 0.51 -154.46 -0.08 -0.72 16 17 C -0.14 -1.47 4.92 -26.62 -0.13 -1.60 16 18 C 0.06 0.61 6.57 37.21 0.24 0.86 16 19 O -0.39 -4.78 10.76 -35.23 -0.38 -5.16 16 20 C 0.06 0.66 6.57 37.22 0.24 0.91 16 21 C -0.15 -1.70 4.22 -26.61 -0.11 -1.82 16 22 C -0.11 -1.44 4.18 -26.74 -0.11 -1.55 16 23 C -0.11 -1.85 4.72 -26.72 -0.13 -1.98 16 24 H 0.06 1.36 6.57 -51.93 -0.34 1.02 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.04 0.76 6.33 -51.93 -0.33 0.43 16 27 H 0.08 1.70 6.71 -51.92 -0.35 1.36 16 28 H 0.05 0.90 6.33 -51.93 -0.33 0.57 16 29 H 0.00 -0.07 6.31 -51.93 -0.33 -0.40 16 30 H 0.03 0.82 5.89 -51.93 -0.31 0.51 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.03 0.56 6.44 -51.92 -0.33 0.22 16 33 H 0.06 0.86 6.37 -51.92 -0.33 0.53 16 34 H 0.07 1.01 6.51 -51.93 -0.34 0.67 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.53 6.60 -51.93 -0.34 0.19 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.64 6.60 -51.93 -0.34 0.29 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.09 1.11 4.84 -51.93 -0.25 0.85 16 45 H 0.06 0.75 5.01 -51.93 -0.26 0.49 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.07 1.14 6.37 -51.93 -0.33 0.81 16 48 H 0.07 1.33 6.23 -51.92 -0.32 1.01 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -28.99 336.49 -9.29 -38.28 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.15 Total: 0.71 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.50 Total: -17.57 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.31 Total: -37.90 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.38 Total: -5.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.99 -9.29 -38.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173049736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.488 kcal (2) G-P(sol) polarization free energy of solvation -28.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds