Wall clock time and date at job start Tue Mar 31 2020 06:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 114.00038 * 2 1 4 4 C 1.53001 * 109.47077 * 269.99874 * 3 2 1 5 5 C 1.53000 * 109.46941 * 299.99948 * 4 3 2 6 6 C 1.53002 * 109.47400 * 299.99944 * 5 4 3 7 7 N 1.46892 * 109.46978 * 180.02562 * 6 5 4 8 8 C 1.46905 * 110.99813 * 155.00220 * 7 6 5 9 9 C 1.52999 * 109.47103 * 274.99845 * 8 7 6 10 10 C 1.52999 * 109.47077 * 299.99846 * 9 8 7 11 11 C 1.53000 * 109.47428 * 300.00207 * 10 9 8 12 12 C 1.50705 * 109.47258 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99213 * 245.44088 * 12 11 10 14 14 C 1.37875 * 119.99625 * 65.44673 * 12 11 10 15 15 N 1.31507 * 120.00350 * 9.56941 * 14 12 11 16 16 Si 1.86805 * 119.99344 * 189.57507 * 14 12 11 17 17 H 1.48496 * 109.47337 * 94.99001 * 16 14 12 18 18 H 1.48502 * 109.46646 * 214.98696 * 16 14 12 19 19 H 1.48496 * 109.47046 * 334.98437 * 16 14 12 20 20 C 1.52999 * 109.47160 * 59.99844 * 11 10 9 21 21 C 1.52999 * 109.47077 * 300.00371 * 20 11 10 22 22 C 1.52997 * 109.46695 * 60.00031 * 6 5 4 23 23 C 1.52997 * 109.47689 * 300.00078 * 22 6 5 24 24 H 1.09005 * 109.47167 * 59.99925 * 1 2 3 25 25 H 1.09007 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47528 * 300.00279 * 1 2 3 27 27 H 1.09003 * 109.46947 * 30.00083 * 3 2 1 28 28 H 1.09002 * 109.47026 * 180.02562 * 4 3 2 29 29 H 1.08998 * 109.47076 * 60.00286 * 4 3 2 30 30 H 1.09003 * 109.46762 * 180.02562 * 5 4 3 31 31 H 1.08994 * 109.47420 * 60.00406 * 5 4 3 32 32 H 1.09001 * 109.46633 * 300.00274 * 6 5 4 33 33 H 1.00898 * 111.00041 * 278.95255 * 7 6 5 34 34 H 1.08996 * 109.47216 * 34.99942 * 8 7 6 35 35 H 1.09002 * 109.47078 * 59.99885 * 9 8 7 36 36 H 1.09000 * 109.47107 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.47213 * 179.97438 * 10 9 8 38 38 H 1.09000 * 109.47195 * 60.00022 * 10 9 8 39 39 H 1.09000 * 109.46782 * 300.00068 * 11 10 9 40 40 H 0.97003 * 119.99611 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.47078 * 180.02562 * 20 11 10 42 42 H 1.09000 * 109.47107 * 59.99858 * 20 11 10 43 43 H 1.09000 * 109.47195 * 299.99978 * 21 20 11 44 44 H 1.08999 * 109.47213 * 180.02562 * 21 20 11 45 45 H 1.09002 * 109.47129 * 60.00217 * 22 6 5 46 46 H 1.09009 * 109.47013 * 180.02562 * 22 6 5 47 47 H 1.09000 * 109.47750 * 180.02562 * 23 22 6 48 48 H 1.09002 * 109.46949 * 300.00249 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.2177 1.7713 -1.4425 5 6 3.1515 0.7973 -2.1637 6 6 4.5002 0.7550 -1.4424 7 7 5.3969 -0.1797 -2.1352 8 6 6.8045 0.1610 -1.8892 9 6 7.2529 1.2291 -2.8887 10 6 7.0998 0.6913 -4.3128 11 6 7.9642 -0.5598 -4.4813 12 6 7.8129 -1.0898 -5.8839 13 1 7.3537 -2.0530 -6.0504 14 6 8.2608 -0.3451 -6.9543 15 7 8.9848 0.7332 -6.7482 16 14 7.8389 -0.8679 -8.6974 17 1 6.6271 -0.1404 -9.1529 18 1 8.9755 -0.5492 -9.5984 19 1 7.5789 -2.3296 -8.7265 20 6 7.5159 -1.6279 -3.4818 21 6 7.6690 -1.0900 -2.0577 22 6 4.2926 0.2892 0.0000 23 6 3.3589 1.2631 0.7213 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.3449 1.9993 0.5139 28 1 2.6615 2.7669 -1.4425 29 1 1.2569 1.8014 -1.9563 30 1 3.2997 1.1294 -3.1912 31 1 2.7082 -0.1985 -2.1637 32 1 4.9435 1.7508 -1.4425 33 1 5.2033 -1.1328 -1.8666 34 1 6.9137 0.5441 -0.8747 35 1 6.6370 2.1204 -2.7687 36 1 8.2975 1.4816 -2.7065 37 1 7.4187 1.4524 -5.0249 38 1 6.0553 0.4385 -4.4954 39 1 9.0087 -0.3069 -4.2988 40 1 9.2995 1.2572 -7.5014 41 1 8.1320 -2.5190 -3.6016 42 1 6.4714 -1.8806 -3.6643 43 1 8.7134 -0.8372 -1.8751 44 1 7.3500 -1.8511 -1.3456 45 1 3.8493 -0.7066 0.0000 46 1 5.2535 0.2595 0.5141 47 1 3.2114 0.9315 1.7491 48 1 3.8022 2.2589 0.7213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330189.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:55 Heat of formation + Delta-G solvation = -80.283816 kcal Electronic energy + Delta-G solvation = -23577.053884 eV Core-core repulsion = 20437.164312 eV Total energy + Delta-G solvation = -3139.889572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.68642 -38.14760 -36.15781 -33.53494 -31.87795 -30.81450 -29.64626 -29.29934 -27.21483 -26.40185 -24.29039 -22.65734 -21.87858 -21.36336 -20.37152 -19.66004 -18.04833 -16.44540 -16.21737 -16.16331 -15.51111 -14.97502 -14.64427 -14.49982 -14.13186 -13.64957 -13.59152 -13.11750 -12.82702 -12.59427 -12.43986 -12.21587 -12.20578 -11.92897 -11.48158 -11.39145 -11.20314 -11.12878 -11.06534 -10.77007 -10.72362 -10.57839 -10.38716 -10.11425 -10.08905 -9.95327 -9.69618 -9.57862 -9.16477 -8.64643 -8.48958 -8.12378 -7.75414 -5.86155 -3.85561 3.39800 3.46607 3.50062 3.63303 4.45377 4.57432 4.64952 4.75481 4.89905 5.09007 5.12107 5.17623 5.27018 5.45035 5.45296 5.46050 5.48211 5.52218 5.56979 5.61647 5.70950 5.83261 5.86124 5.89172 5.99070 6.21042 6.22365 6.28175 6.42764 6.46473 6.50168 6.56449 6.59813 6.68549 6.88807 6.94907 7.07268 7.12044 7.35602 7.56444 7.66684 7.72883 7.88957 7.95875 8.24599 8.27064 8.66898 9.18995 9.76336 11.22930 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.003952 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.835716 B = 7083.670400 C = 7581.805875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.089 3.911 4 C -0.140 4.140 5 C -0.100 4.100 6 C 0.091 3.909 7 N -0.666 5.666 8 C 0.096 3.904 9 C -0.105 4.105 10 C -0.090 4.090 11 C 0.051 3.949 12 C -0.507 4.507 13 H 0.052 0.948 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.882 3.118 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.143 4.143 23 C -0.110 4.110 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.336 0.664 34 H 0.025 0.975 35 H 0.037 0.963 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.024 0.976 40 H 0.257 0.743 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 2.264 15.824 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.031 3.969 4 C -0.178 4.178 5 C -0.138 4.138 6 C -0.019 4.019 7 N -0.296 5.296 8 C -0.014 4.014 9 C -0.143 4.143 10 C -0.128 4.128 11 C 0.032 3.968 12 C -0.546 4.546 13 H 0.070 0.930 14 C -0.138 4.138 15 N -0.530 5.530 16 Si 0.710 3.290 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.200 1.200 20 C -0.139 4.139 21 C -0.157 4.157 22 C -0.183 4.183 23 C -0.148 4.148 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.590 2.565 15.109 20.483 hybrid contribution -0.350 -0.181 -0.045 0.397 sum -13.940 2.384 15.064 20.662 Atomic orbital electron populations 1.22751 0.81735 1.02508 0.99592 1.87948 1.18943 1.27752 1.95003 1.22141 0.94568 0.84415 0.95746 1.22025 1.00235 0.99806 0.95760 1.21354 0.93707 0.99618 0.99109 1.21566 0.93481 0.96813 0.90059 1.60538 1.02919 1.05614 1.60519 1.21472 0.87463 0.96556 0.95862 1.21600 0.98660 0.95811 0.98250 1.21345 1.00037 0.99546 0.91868 1.18609 0.95021 0.90729 0.92417 1.21229 1.38292 1.03721 0.91339 0.93012 1.24934 0.94848 0.95427 0.98626 1.69980 1.35104 1.17295 1.30575 0.86745 0.77936 0.78838 0.85456 1.20860 1.21557 1.20030 1.21526 1.00605 0.98936 0.92809 1.21750 0.99067 0.95785 0.99060 1.22209 0.98628 1.00041 0.97387 1.21561 0.94086 1.00319 0.98876 0.94183 0.89872 0.94486 0.92696 0.91220 0.92023 0.91225 0.91460 0.91027 0.84558 0.95739 0.94418 0.93256 0.92172 0.93058 0.95815 0.93364 0.94277 0.92556 0.92295 0.94038 0.91111 0.92518 0.91821 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.34 16 2 O -0.38 -4.18 9.00 -35.23 -0.32 -4.50 16 3 C 0.09 0.88 2.92 -26.73 -0.08 0.80 16 4 C -0.14 -1.47 5.63 -26.73 -0.15 -1.62 16 5 C -0.10 -1.30 5.38 -26.73 -0.14 -1.44 16 6 C 0.09 1.22 2.28 -67.72 -0.15 1.07 16 7 N -0.67 -10.46 4.57 -99.74 -0.46 -10.92 16 8 C 0.10 1.61 2.63 -67.71 -0.18 1.43 16 9 C -0.11 -2.06 5.52 -26.73 -0.15 -2.21 16 10 C -0.09 -2.14 4.88 -26.73 -0.13 -2.27 16 11 C 0.05 1.28 1.97 -91.77 -0.18 1.10 16 12 C -0.51 -14.36 8.48 -34.44 -0.29 -14.65 16 13 H 0.05 1.46 7.77 -52.49 -0.41 1.05 16 14 C 0.06 1.78 5.20 -17.82 -0.09 1.69 16 15 N -0.89 -26.34 12.16 55.43 0.67 -25.67 16 16 Si 0.88 21.94 29.55 -169.99 -5.02 16.92 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.10 -2.14 4.98 -26.73 -0.13 -2.28 16 21 C -0.12 -2.09 5.30 -26.73 -0.14 -2.23 16 22 C -0.14 -1.68 5.01 -26.73 -0.13 -1.81 16 23 C -0.11 -1.10 5.66 -26.73 -0.15 -1.25 16 24 H 0.04 0.30 7.87 -51.93 -0.41 -0.10 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 27 H 0.05 0.46 7.79 -51.93 -0.40 0.06 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 32 H 0.07 1.02 7.11 -51.93 -0.37 0.65 16 33 H 0.34 5.09 7.93 -39.29 -0.31 4.78 16 34 H 0.02 0.38 7.11 -51.93 -0.37 0.02 16 35 H 0.04 0.70 7.43 -51.93 -0.39 0.31 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 38 H 0.05 1.25 7.60 -51.93 -0.39 0.85 16 39 H 0.02 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.20 7.48 -51.93 -0.39 0.81 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 46 H 0.06 0.67 7.43 -51.92 -0.39 0.28 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -29.41 356.65 -9.93 -39.34 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.17 Total: 1.76 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -1.02 Total: -22.31 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.22 Total: -36.58 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.32 Total: -4.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.41 -9.93 -39.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330189.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.941 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds