Wall clock time and date at job start Tue Mar 31 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.52119 * 2 1 4 4 C 1.53118 * 109.51947 * 239.88183 * 2 1 3 5 5 C 1.53035 * 109.27768 * 182.43532 * 4 2 1 6 6 N 1.46847 * 109.52507 * 59.17975 * 5 4 2 7 7 C 1.46903 * 111.00410 * 174.15719 * 6 5 4 8 8 C 1.53000 * 109.46898 * 66.04752 * 7 6 5 9 9 C 1.52995 * 109.47200 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47124 * 60.00113 * 9 8 7 11 11 C 1.50694 * 109.47168 * 60.00026 * 10 9 8 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.53000 * 109.46989 * 300.00016 * 10 9 8 20 20 C 1.53001 * 109.46909 * 306.04787 * 7 6 5 21 21 C 1.46841 * 111.19643 * 298.25912 * 6 5 4 22 22 C 1.53040 * 109.52583 * 61.73720 * 21 6 5 23 23 C 1.52996 * 109.50387 * 180.87895 * 22 21 6 24 24 O 1.42899 * 109.50039 * 60.76089 * 22 21 6 25 25 H 1.08996 * 109.46920 * 180.12656 * 1 2 3 26 26 H 1.09007 * 109.46584 * 300.11789 * 1 2 3 27 27 H 1.08999 * 109.47524 * 60.11906 * 1 2 3 28 28 H 1.09002 * 109.50861 * 62.49947 * 4 2 1 29 29 H 1.08999 * 109.50703 * 302.37764 * 4 2 1 30 30 H 1.09001 * 109.46653 * 299.16325 * 5 4 2 31 31 H 1.09002 * 109.46174 * 179.19537 * 5 4 2 32 32 H 1.08998 * 109.47002 * 186.04665 * 7 6 5 33 33 H 1.08997 * 109.47359 * 59.99533 * 8 7 6 34 34 H 1.09007 * 109.46901 * 300.00289 * 8 7 6 35 35 H 1.08998 * 109.46811 * 299.99981 * 9 8 7 36 36 H 1.09002 * 109.47384 * 180.02562 * 9 8 7 37 37 H 1.09003 * 109.46836 * 180.02562 * 10 9 8 38 38 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47359 * 180.02562 * 19 10 9 40 40 H 1.09007 * 109.47356 * 300.00069 * 19 10 9 41 41 H 1.08994 * 109.47397 * 299.99613 * 20 7 6 42 42 H 1.08998 * 109.47388 * 60.00114 * 20 7 6 43 43 H 1.09003 * 109.46088 * 181.75184 * 21 6 5 44 44 H 1.08999 * 109.46562 * 301.72132 * 21 6 5 45 45 H 1.09007 * 109.47363 * 179.80499 * 23 22 21 46 46 H 1.09002 * 109.47183 * 299.80383 * 23 22 21 47 47 H 1.08999 * 109.47267 * 59.80640 * 23 22 21 48 48 H 0.96702 * 114.00038 * 60.20131 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2483 5 6 3.5707 -0.7742 -1.2123 6 7 4.0103 -1.4788 -0.0012 7 6 5.4672 -1.6677 -0.0014 8 6 6.1580 -0.3061 0.0986 9 6 7.6752 -0.5028 0.0977 10 6 8.0990 -1.1956 -1.1990 11 6 7.7022 -0.3433 -2.3767 12 1 7.1986 0.5986 -2.2165 13 6 7.9822 -0.7659 -3.6590 14 7 8.5959 -1.9126 -3.8541 15 14 7.4897 0.2903 -5.1189 16 1 7.9011 -0.3821 -6.3775 17 1 6.0171 0.4810 -5.1176 18 1 8.1601 1.6118 -5.0223 19 6 7.4082 -2.5571 -1.2990 20 6 5.8913 -2.3608 -1.2978 21 6 3.5710 -0.7759 1.2109 22 6 2.0418 -0.7258 1.2472 23 6 1.5850 0.0257 2.4991 24 8 1.5214 -2.0564 1.2721 25 1 -0.3633 -1.0276 0.0023 26 1 -0.3633 0.5157 0.8890 27 1 -0.3634 0.5120 -0.8910 28 1 1.7161 -0.1876 -2.1395 29 1 1.6447 -1.7391 -1.2687 30 1 3.9674 0.2410 -1.2060 31 1 3.9377 -1.3018 -2.0928 32 1 5.7538 -2.2840 0.8507 33 1 5.8557 0.1877 1.0220 34 1 5.8713 0.3102 -0.7536 35 1 7.9621 -1.1192 0.9496 36 1 8.1674 0.4672 0.1694 37 1 9.1799 -1.3360 -1.1994 38 1 8.7925 -2.2101 -4.7562 39 1 7.7104 -3.0509 -2.2225 40 1 7.6951 -3.1736 -0.4471 41 1 5.3992 -3.3307 -1.3691 42 1 5.6047 -1.7445 -2.1500 43 1 3.9380 -1.3047 2.0905 44 1 3.9676 0.2394 1.2059 45 1 0.4959 0.0641 2.5227 46 1 1.9496 -0.4914 3.3867 47 1 1.9839 1.0399 2.4800 48 1 1.8053 -2.5756 2.0369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330587.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:32 Heat of formation + Delta-G solvation = -87.797450 kcal Electronic energy + Delta-G solvation = -24539.641229 eV Core-core repulsion = 21399.425842 eV Total energy + Delta-G solvation = -3140.215387 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.26430 -39.33134 -36.61153 -35.07817 -33.83475 -32.28062 -31.38477 -30.50075 -28.58477 -27.30692 -26.19334 -23.83605 -23.51679 -22.89091 -21.46297 -20.64066 -19.95853 -17.71021 -17.21373 -17.02759 -16.61820 -16.16424 -15.73823 -15.47986 -15.26390 -14.93634 -14.75525 -14.64504 -14.44551 -13.86746 -13.54119 -13.38227 -13.09685 -13.00045 -12.86423 -12.82294 -12.76073 -12.68247 -12.53040 -12.41358 -12.26743 -12.04249 -11.80943 -11.67687 -11.49373 -11.29032 -11.05105 -10.94407 -10.67704 -10.55566 -10.48915 -10.26289 -8.98867 -8.03122 -6.12866 1.39195 1.40121 1.46493 2.44276 2.97443 3.24983 3.53297 3.76440 3.82318 3.96587 4.03545 4.12849 4.20219 4.38389 4.41442 4.51449 4.60104 4.64866 4.68179 4.70754 4.78067 4.85057 4.87048 4.89945 4.91922 4.96520 4.97833 5.02673 5.04298 5.07175 5.18268 5.20475 5.26079 5.31886 5.41885 5.45470 5.49959 5.61364 5.66087 5.71164 5.74952 5.93712 6.21378 6.28408 6.36777 6.46903 6.96269 7.08436 7.52537 9.01425 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.005368 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.032983 B = 5215.103843 C = 5826.693126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.102 4.102 5 C 0.053 3.947 6 N -0.522 5.522 7 C 0.101 3.899 8 C -0.126 4.126 9 C -0.097 4.097 10 C 0.039 3.961 11 C -0.503 4.503 12 H 0.048 0.952 13 C 0.016 3.984 14 N -0.917 5.917 15 Si 0.936 3.064 16 H -0.288 1.288 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.101 4.101 20 C -0.083 4.083 21 C 0.027 3.973 22 C 0.145 3.855 23 C -0.173 4.173 24 O -0.557 6.557 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.041 0.959 37 H -0.012 1.012 38 H 0.257 0.743 39 H 0.057 0.943 40 H 0.027 0.973 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.088 3.180 12.211 19.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.075 4.075 6 N -0.244 5.244 7 C -0.007 4.007 8 C -0.165 4.165 9 C -0.136 4.136 10 C 0.020 3.980 11 C -0.541 4.541 12 H 0.066 0.934 13 C -0.182 4.182 14 N -0.557 5.557 15 Si 0.762 3.238 16 H -0.213 1.213 17 H -0.198 1.198 18 H -0.200 1.200 19 C -0.140 4.140 20 C -0.121 4.121 21 C -0.101 4.101 22 C 0.103 3.897 23 C -0.230 4.230 24 O -0.364 6.364 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.006 0.994 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.086 0.914 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -15.536 2.800 11.510 19.537 hybrid contribution 1.150 0.985 -0.818 1.721 sum -14.386 3.786 10.692 18.320 Atomic orbital electron populations 1.21710 0.93594 1.01996 1.01903 1.21184 0.97169 0.98108 0.93434 0.90590 1.21541 0.93492 1.01188 0.97755 1.22089 0.96064 0.95904 0.93476 1.62161 1.11377 1.49059 1.01846 1.21562 0.85842 0.95265 0.98030 1.21949 0.95955 0.98328 1.00232 1.21397 0.95587 0.99119 0.97464 1.18684 0.93537 0.93178 0.92590 1.21290 1.36766 1.04606 0.91433 0.93391 1.25575 0.95566 0.95989 1.01036 1.70000 1.42844 1.21513 1.21389 0.85955 0.78818 0.79347 0.79653 1.21324 1.19789 1.19992 1.21345 0.94728 0.98304 0.99576 1.21280 0.95631 0.98316 0.96829 1.22880 0.96590 0.97317 0.93297 1.21114 0.89999 0.83428 0.95115 1.22447 1.02708 1.01031 0.96855 1.86514 1.74096 1.24685 1.51087 0.92815 0.91489 0.92601 0.91521 0.91745 0.95975 0.92348 0.90563 0.92039 0.93315 0.93051 0.94001 0.99381 0.93391 0.92476 0.95476 0.94045 0.93349 0.89891 0.94380 0.90858 0.91110 0.91439 0.76933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.73 71.98 0.63 -1.93 16 2 C -0.08 -1.80 2.12 -10.72 -0.02 -1.82 16 3 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.10 -2.78 5.22 30.65 0.16 -2.62 16 5 C 0.05 1.73 4.68 86.33 0.40 2.14 16 6 N -0.52 -16.21 4.58 -871.12 -3.99 -20.20 16 7 C 0.10 3.56 2.33 44.92 0.10 3.67 16 8 C -0.13 -4.56 4.28 30.59 0.13 -4.43 16 9 C -0.10 -3.95 5.41 30.59 0.17 -3.79 16 10 C 0.04 1.92 2.59 -11.54 -0.03 1.89 16 11 C -0.50 -27.02 6.61 25.60 0.17 -26.85 16 12 H 0.05 2.57 6.71 -2.91 -0.02 2.55 16 13 C 0.02 0.90 5.30 84.66 0.45 1.35 16 14 N -0.92 -53.26 11.32 21.45 0.24 -53.01 16 15 Si 0.94 43.93 29.54 68.60 2.03 45.95 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 19 C -0.10 -4.80 5.23 30.58 0.16 -4.64 16 20 C -0.08 -3.51 4.56 30.58 0.14 -3.37 16 21 C 0.03 0.67 3.78 86.33 0.33 1.00 16 22 C 0.14 3.00 0.68 -10.75 -0.01 2.99 16 23 C -0.17 -2.62 8.53 71.98 0.61 -2.01 16 24 O -0.56 -12.30 11.54 -148.98 -1.72 -14.02 16 25 H 0.05 1.14 7.62 -2.39 -0.02 1.13 16 26 H 0.07 1.06 6.52 -2.38 -0.02 1.05 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.92 7.80 -2.39 -0.02 1.91 16 30 H 0.02 0.77 6.75 -2.39 -0.02 0.75 16 31 H 0.06 2.22 5.87 -2.39 -0.01 2.21 16 32 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.06 1.91 6.51 -2.39 -0.02 1.90 16 34 H 0.05 2.00 5.16 -2.38 -0.01 1.99 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 40 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.05 2.30 5.27 -2.39 -0.01 2.28 16 43 H 0.08 1.82 8.12 -2.39 -0.02 1.80 16 44 H 0.04 0.97 6.61 -2.39 -0.02 0.95 16 45 H 0.07 1.04 6.51 -2.38 -0.02 1.03 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.38 6.04 9.05 -74.06 -0.67 5.37 16 Total: -1.00 -60.32 340.78 0.21 -60.11 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.26 Total: 19.62 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.39 Total: -38.44 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: -3.74 Total: -73.21 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.72 Total: -14.02 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.32 0.21 -60.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330587.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.687 kcal (2) G-P(sol) polarization free energy of solvation -60.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds