Wall clock time and date at job start Tue Mar 31 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.51942 * 2 1 4 4 C 1.53118 * 109.52193 * 239.87725 * 2 1 3 5 5 C 1.53036 * 109.27888 * 182.43959 * 4 2 1 6 6 N 1.46843 * 109.52501 * 59.17739 * 5 4 2 7 7 C 1.46901 * 111.00314 * 174.16101 * 6 5 4 8 8 C 1.53000 * 109.46769 * 66.04469 * 7 6 5 9 9 C 1.52997 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47317 * 59.99960 * 9 8 7 11 11 C 1.50703 * 109.47466 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 120.00134 * 11 10 9 13 13 C 1.37880 * 119.99788 * 300.00202 * 11 10 9 14 14 N 1.31510 * 119.99893 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99568 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47545 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47117 * 120.00317 * 15 13 11 18 18 H 1.48504 * 109.46892 * 239.99922 * 15 13 11 19 19 C 1.53005 * 109.47159 * 300.00546 * 10 9 8 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 10 9 21 21 C 1.46847 * 111.19945 * 298.26162 * 6 5 4 22 22 C 1.53039 * 109.52346 * 61.74041 * 21 6 5 23 23 C 1.52995 * 109.50508 * 60.76336 * 22 21 6 24 24 O 1.42904 * 109.53402 * 180.86500 * 22 21 6 25 25 H 1.09012 * 109.47040 * 180.12205 * 1 2 3 26 26 H 1.09001 * 109.47290 * 300.12004 * 1 2 3 27 27 H 1.08996 * 109.47266 * 60.12797 * 1 2 3 28 28 H 1.09006 * 109.50593 * 62.49407 * 4 2 1 29 29 H 1.09002 * 109.50400 * 302.37955 * 4 2 1 30 30 H 1.09005 * 109.46135 * 299.15850 * 5 4 2 31 31 H 1.08999 * 109.46398 * 179.19776 * 5 4 2 32 32 H 1.08992 * 109.47407 * 186.04767 * 7 6 5 33 33 H 1.09002 * 109.47398 * 300.00295 * 8 7 6 34 34 H 1.09001 * 109.47194 * 60.00475 * 8 7 6 35 35 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47153 * 300.00319 * 9 8 7 37 37 H 1.09002 * 109.46716 * 60.00091 * 10 9 8 38 38 H 0.96996 * 119.99480 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46935 * 299.99411 * 19 10 9 40 40 H 1.09001 * 109.46812 * 179.97438 * 19 10 9 41 41 H 1.08993 * 109.47194 * 179.97438 * 20 19 10 42 42 H 1.09002 * 109.46695 * 59.99734 * 20 19 10 43 43 H 1.08993 * 109.46224 * 181.75634 * 21 6 5 44 44 H 1.08999 * 109.46167 * 301.72572 * 21 6 5 45 45 H 1.08998 * 109.46871 * 300.19747 * 23 22 21 46 46 H 1.09000 * 109.47204 * 60.19741 * 23 22 21 47 47 H 1.09000 * 109.47337 * 180.20044 * 23 22 21 48 48 H 0.96701 * 113.99354 * 299.82042 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7243 -1.2483 5 6 3.5708 -0.7744 -1.2122 6 7 4.0103 -1.4788 -0.0010 7 6 5.4671 -1.6677 -0.0011 8 6 6.1578 -0.3061 0.0988 9 6 7.6751 -0.5027 0.0980 10 6 8.0990 -1.1957 -1.1985 11 6 9.5934 -1.3900 -1.1990 12 1 10.0086 -2.3848 -1.2643 13 6 10.4306 -0.2975 -1.1161 14 7 9.9249 0.9139 -1.0371 15 14 12.2829 -0.5383 -1.1175 16 1 12.5938 -1.9871 -1.2150 17 1 12.8739 0.1745 -2.2785 18 1 12.8538 0.0063 0.1406 19 6 7.4081 -2.5573 -1.2985 20 6 5.8908 -2.3607 -1.2977 21 6 3.5709 -0.7759 1.2111 22 6 2.0417 -0.7258 1.2473 23 6 1.4845 -2.1505 1.2741 24 8 1.6142 -0.0242 2.4166 25 1 -0.3634 -1.0278 0.0022 26 1 -0.3634 0.5157 0.8889 27 1 -0.3633 0.5118 -0.8911 28 1 1.7160 -0.1877 -2.1395 29 1 1.6447 -1.7392 -1.2685 30 1 3.9674 0.2409 -1.2060 31 1 3.9378 -1.3020 -2.0925 32 1 5.7537 -2.2839 0.8510 33 1 5.8712 0.3101 -0.7534 34 1 5.8556 0.1877 1.0223 35 1 8.1673 0.4671 0.1696 36 1 7.9620 -1.1192 0.9500 37 1 7.8120 -0.5793 -2.0505 38 1 10.5139 1.6823 -0.9785 39 1 7.6951 -3.1737 -0.4465 40 1 7.7098 -3.0507 -2.2224 41 1 5.3988 -3.3306 -1.3694 42 1 5.6040 -1.7442 -2.1497 43 1 3.9379 -1.3046 2.0907 44 1 3.9674 0.2394 1.2060 45 1 1.8121 -2.6855 0.3827 46 1 1.8491 -2.6666 2.1622 47 1 0.3953 -2.1142 1.2963 48 1 1.9034 -0.4290 3.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:36 Heat of formation + Delta-G solvation = -73.497144 kcal Electronic energy + Delta-G solvation = -24011.618072 eV Core-core repulsion = 20872.022792 eV Total energy + Delta-G solvation = -3139.595279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28639 -37.97520 -35.63345 -34.08824 -32.23956 -30.69709 -29.78284 -29.26036 -27.75829 -26.20790 -24.22385 -22.89456 -22.48420 -21.51807 -20.12391 -18.94576 -18.15774 -16.87888 -16.32041 -15.86747 -15.17041 -14.93384 -14.58573 -14.46767 -13.83713 -13.61566 -13.37557 -13.23282 -12.96850 -12.55080 -12.45377 -12.27831 -12.07840 -11.97218 -11.78837 -11.45748 -11.36806 -11.16538 -11.01151 -10.85487 -10.75504 -10.62769 -10.43470 -10.30587 -10.10797 -10.01874 -9.90770 -9.71712 -9.32125 -8.97857 -8.64781 -8.31177 -7.85461 -5.96483 -4.02631 3.29663 3.37980 3.41859 3.91709 4.31200 4.45311 4.65172 4.74507 4.91152 5.16009 5.19329 5.30572 5.35377 5.42490 5.47730 5.54203 5.59400 5.65851 5.73086 5.76181 5.83962 5.90109 5.96897 6.01156 6.06256 6.13485 6.16628 6.19515 6.23137 6.31035 6.41000 6.43802 6.45343 6.61171 6.67805 6.79922 6.94786 7.11859 7.23171 7.31187 7.43734 7.53896 7.65046 7.77049 8.03595 8.17525 8.49554 9.02087 9.62123 11.08887 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035325 B = 0.003826 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.440825 B = 7317.266574 C = 7466.030235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.077 4.077 3 H 0.071 0.929 4 C -0.111 4.111 5 C 0.044 3.956 6 N -0.527 5.527 7 C 0.089 3.911 8 C -0.146 4.146 9 C -0.104 4.104 10 C 0.049 3.951 11 C -0.511 4.511 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.891 5.891 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.108 4.108 20 C -0.108 4.108 21 C 0.031 3.969 22 C 0.137 3.863 23 C -0.169 4.169 24 O -0.562 6.562 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.023 0.977 38 H 0.258 0.742 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.056 0.944 48 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.370 -3.588 3.300 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.084 4.084 6 N -0.251 5.251 7 C -0.018 4.018 8 C -0.185 4.185 9 C -0.143 4.143 10 C 0.030 3.970 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.098 4.098 22 C 0.096 3.904 23 C -0.226 4.226 24 O -0.367 6.367 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.825 -3.480 2.868 18.386 hybrid contribution 1.813 0.473 0.541 1.950 sum -16.012 -3.007 3.409 16.644 Atomic orbital electron populations 1.21810 0.94857 1.01774 1.01577 1.21083 0.96070 0.99475 0.92941 0.91078 1.21728 0.95476 1.01071 0.96627 1.22226 0.94582 0.97546 0.94074 1.62239 1.13589 1.48228 1.01055 1.21772 0.84188 0.96724 0.99140 1.22246 0.99871 0.96550 0.99831 1.21539 0.90328 1.03536 0.98885 1.18652 0.94080 0.90363 0.93869 1.21289 0.91258 0.92742 1.49684 0.92761 1.24971 0.98492 0.95311 0.95270 1.69890 1.34424 0.97809 1.50899 0.86603 0.86086 0.78194 0.77514 1.19827 1.21111 1.21125 1.21616 0.92324 1.00506 1.00125 1.21659 0.97688 0.99150 0.96073 1.22706 0.94929 0.98026 0.94149 1.21151 0.92203 0.91450 0.85554 1.22430 1.00558 0.96310 1.03304 1.86529 1.78749 1.55583 1.15829 0.92534 0.92171 0.93073 0.91283 0.90852 0.94415 0.89816 0.90627 0.92893 0.94009 0.89237 0.94939 0.95926 0.93206 0.93424 0.93372 0.92893 0.92500 0.91069 0.93733 0.90011 0.93026 0.92513 0.77945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.67 37.16 0.32 -1.11 16 2 C -0.08 -0.89 2.29 -90.50 -0.21 -1.09 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.11 -1.24 5.02 -26.65 -0.13 -1.37 16 5 C 0.04 0.59 4.67 -3.84 -0.02 0.57 16 6 N -0.53 -7.42 3.98 -226.70 -0.90 -8.32 16 7 C 0.09 1.48 2.33 -67.71 -0.16 1.32 16 8 C -0.15 -2.78 4.50 -26.73 -0.12 -2.90 16 9 C -0.10 -2.42 4.98 -26.73 -0.13 -2.56 16 10 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 11 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 14 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 15 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.11 -2.20 5.14 -26.73 -0.14 -2.33 16 20 C -0.11 -1.85 4.78 -26.73 -0.13 -1.98 16 21 C 0.03 0.40 3.90 -3.83 -0.01 0.39 16 22 C 0.14 1.58 0.84 -90.54 -0.08 1.50 16 23 C -0.17 -1.75 7.96 37.16 0.30 -1.46 16 24 O -0.56 -6.41 12.43 -35.23 -0.44 -6.84 16 25 H 0.06 0.53 6.38 -51.92 -0.33 0.20 16 26 H 0.06 0.64 7.77 -51.93 -0.40 0.24 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.79 6.58 -51.93 -0.34 0.45 16 30 H 0.04 0.56 6.76 -51.93 -0.35 0.21 16 31 H 0.08 1.14 5.87 -51.93 -0.30 0.84 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 1.05 6.68 -51.93 -0.35 0.71 16 34 H 0.04 0.76 6.51 -51.93 -0.34 0.42 16 35 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.98 6.20 -51.93 -0.32 0.65 16 43 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 44 H 0.04 0.67 6.61 -51.93 -0.34 0.33 16 45 H 0.08 0.92 6.01 -51.93 -0.31 0.61 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.55 6.39 -51.93 -0.33 0.22 16 48 H 0.37 2.97 9.05 45.56 0.41 3.38 16 LS Contribution 342.09 15.07 5.16 5.16 Total: -1.00 -28.35 342.09 -9.49 -37.84 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.82 Total: 3.46 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: -1.09 Total: -22.73 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: -0.27 Total: -33.15 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.44 Total: -6.84 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.35 -9.49 -37.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.661 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds