Wall clock time and date at job start Tue Mar 31 2020 05:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.03911 * 2 1 4 4 C 1.50824 * 109.04417 * 241.09441 * 2 1 3 5 5 N 1.47629 * 108.03397 * 144.38511 * 4 2 1 6 6 C 1.46895 * 111.00096 * 209.67699 * 5 4 2 7 7 C 1.53000 * 109.47406 * 290.36435 * 6 5 4 8 8 C 1.53002 * 109.47617 * 179.97438 * 7 6 5 9 9 C 1.52991 * 109.47026 * 59.99496 * 8 7 6 10 10 C 1.50704 * 109.47344 * 60.00573 * 9 8 7 11 11 H 1.07993 * 119.99965 * 240.00368 * 10 9 8 12 12 C 1.37881 * 119.99870 * 59.99097 * 10 9 8 13 13 N 1.31518 * 119.99924 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99804 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46936 * 90.00738 * 14 12 10 16 16 H 1.48506 * 109.47322 * 210.00123 * 14 12 10 17 17 H 1.48497 * 109.47601 * 330.00717 * 14 12 10 18 18 C 1.53001 * 109.47634 * 300.00439 * 9 8 7 19 19 C 1.52995 * 109.47663 * 170.36204 * 6 5 4 20 20 C 1.39779 * 114.76758 * 82.81976 * 5 4 2 21 21 C 1.54438 * 111.76578 * 297.72077 * 20 5 4 22 22 C 1.50754 * 109.02915 * 77.38463 * 21 20 5 23 23 C 1.53812 * 109.05234 * 118.98460 * 2 1 3 24 24 H 1.08997 * 108.98051 * 282.06032 * 23 2 1 25 25 O 1.42897 * 108.98280 * 40.86341 * 23 2 1 26 26 H 1.09004 * 109.46649 * 301.01707 * 1 2 3 27 27 H 1.09000 * 109.47532 * 181.02133 * 1 2 3 28 28 H 1.09001 * 109.47361 * 61.01505 * 1 2 3 29 29 H 1.09002 * 109.74897 * 264.01621 * 4 2 1 30 30 H 1.08991 * 109.75323 * 24.74834 * 4 2 1 31 31 H 1.09003 * 109.46998 * 50.35877 * 6 5 4 32 32 H 1.09004 * 109.47102 * 299.99698 * 7 6 5 33 33 H 1.09002 * 109.47031 * 59.99279 * 7 6 5 34 34 H 1.09004 * 109.46716 * 300.00030 * 8 7 6 35 35 H 1.08991 * 109.47537 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.47348 * 180.02562 * 9 8 7 37 37 H 0.96998 * 119.99608 * 179.97438 * 13 12 10 38 38 H 1.09004 * 109.47147 * 300.00101 * 18 9 8 39 39 H 1.08994 * 109.47466 * 179.97438 * 18 9 8 40 40 H 1.09001 * 109.47179 * 300.00660 * 19 6 5 41 41 H 1.09003 * 109.47180 * 59.99785 * 19 6 5 42 42 H 1.09001 * 109.02408 * 177.13424 * 20 5 4 43 43 H 1.09004 * 109.02435 * 58.30973 * 20 5 4 44 44 H 1.09000 * 109.53785 * 317.52191 * 21 20 5 45 45 H 1.08997 * 109.54476 * 197.25935 * 21 20 5 46 46 H 1.09003 * 108.84974 * 146.18432 * 22 21 20 47 47 H 1.08999 * 108.77184 * 27.75098 * 22 21 20 48 48 H 0.96702 * 113.99753 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0303 0.0000 4 6 2.0221 -0.6891 -1.2481 5 7 3.2500 -0.0023 -1.6954 6 6 3.4003 -0.0896 -3.1541 7 6 3.7202 -1.5329 -3.5484 8 6 3.8762 -1.6239 -5.0678 9 6 5.0150 -0.7074 -5.5193 10 6 6.2984 -1.1366 -4.8561 11 1 6.8323 -0.4488 -4.2172 12 6 6.7907 -2.4075 -5.0649 13 7 6.1406 -3.2449 -5.8431 14 14 8.3811 -2.9397 -4.2422 15 1 8.0765 -3.5435 -2.9201 16 1 9.0696 -3.9404 -5.0966 17 1 9.2615 -1.7584 -4.0559 18 6 4.6951 0.7359 -5.1250 19 6 4.5394 0.8268 -3.6052 20 6 4.4187 -0.4102 -1.0462 21 6 4.3653 -0.1144 0.4687 22 6 3.5020 -1.1510 1.1417 23 6 2.0321 -0.7045 1.2718 24 1 1.9442 -0.0192 2.1148 25 8 1.2179 -1.8524 1.5195 26 1 -0.3633 0.5296 0.8808 27 1 -0.3634 -1.0275 0.0183 28 1 -0.3634 0.4980 -0.8989 29 1 2.2434 -1.7338 -1.0291 30 1 1.2617 -0.6284 -2.0266 31 1 2.4723 0.2210 -3.6342 32 1 4.6483 -1.8435 -3.0684 33 1 2.9087 -2.1857 -3.2270 34 1 2.9480 -1.3134 -5.5475 35 1 4.1037 -2.6521 -5.3487 36 1 5.1258 -0.7719 -6.6018 37 1 6.4872 -4.1388 -5.9902 38 1 3.7668 1.0464 -5.6048 39 1 5.5066 1.3887 -5.4463 40 1 4.3115 1.8550 -3.3242 41 1 5.4674 0.5162 -3.1251 42 1 5.2687 0.1157 -1.4810 43 1 4.5521 -1.4818 -1.1944 44 1 3.9403 0.8759 0.6320 45 1 5.3725 -0.1534 0.8836 46 1 3.8997 -1.3480 2.1373 47 1 3.5404 -2.0714 0.5591 48 1 1.4717 -2.3519 2.3077 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330840.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:14 Heat of formation + Delta-G solvation = -67.672353 kcal Electronic energy + Delta-G solvation = -24483.841955 eV Core-core repulsion = 21344.499258 eV Total energy + Delta-G solvation = -3139.342698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06435 -37.93955 -35.86495 -33.38316 -33.13014 -31.79809 -29.56051 -28.39264 -27.45950 -25.16452 -24.43673 -23.58934 -21.72473 -21.23712 -19.76163 -19.26952 -18.26490 -17.21340 -15.93881 -15.70826 -15.26436 -14.97900 -14.73775 -14.32948 -13.63303 -13.46313 -13.26220 -13.20506 -12.93240 -12.76418 -12.59820 -12.14551 -11.89818 -11.66194 -11.43842 -11.26352 -11.10379 -10.97411 -10.82902 -10.81586 -10.56302 -10.51299 -10.39872 -10.21354 -10.08055 -9.82584 -9.79005 -9.61023 -9.09743 -8.86903 -8.59970 -8.26379 -7.53812 -5.93779 -3.97850 3.29665 3.37533 3.39970 4.22079 4.34972 4.45968 4.74151 4.78154 5.01699 5.15239 5.34642 5.37049 5.49304 5.50501 5.60230 5.66955 5.78659 5.84357 5.86492 5.92506 6.02134 6.09764 6.11752 6.17215 6.22620 6.30426 6.35434 6.38672 6.45331 6.54863 6.58105 6.60880 6.63762 6.81494 6.83010 6.92210 7.14535 7.23753 7.46463 7.57412 7.59968 7.69813 7.79582 7.92997 8.01885 8.20400 8.52868 9.04645 9.64952 11.12016 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.005425 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.374988 B = 5160.082666 C = 5710.678551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.079 4.079 3 H 0.090 0.910 4 C 0.073 3.927 5 N -0.551 5.551 6 C 0.097 3.903 7 C -0.127 4.127 8 C -0.104 4.104 9 C 0.043 3.957 10 C -0.498 4.498 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.881 3.119 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.106 4.106 19 C -0.099 4.099 20 C 0.066 3.934 21 C -0.115 4.115 22 C -0.154 4.154 23 C 0.112 3.888 24 H 0.046 0.954 25 O -0.565 6.565 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.012 0.988 35 H 0.088 0.912 36 H 0.023 0.977 37 H 0.258 0.742 38 H 0.033 0.967 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.055 5.380 13.280 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.098 4.098 3 H 0.108 0.892 4 C -0.055 4.055 5 N -0.274 5.274 6 C -0.010 4.010 7 C -0.166 4.166 8 C -0.142 4.142 9 C 0.025 3.975 10 C -0.536 4.536 11 H 0.072 0.928 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.709 3.291 15 H -0.209 1.209 16 H -0.214 1.214 17 H -0.200 1.200 18 C -0.144 4.144 19 C -0.136 4.136 20 C -0.063 4.063 21 C -0.153 4.153 22 C -0.192 4.192 23 C 0.054 3.946 24 H 0.064 0.936 25 O -0.370 6.370 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.031 0.969 35 H 0.107 0.893 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.383 5.865 12.798 16.384 hybrid contribution 1.383 -1.530 0.845 2.228 sum -6.999 4.335 13.642 15.934 Atomic orbital electron populations 1.21701 0.94841 1.02232 1.00759 1.21059 0.95849 1.00006 0.92875 0.89204 1.21760 0.91906 0.95914 0.95874 1.59148 1.02874 1.59235 1.06128 1.21717 0.98502 0.96049 0.84754 1.21968 1.00309 0.94931 0.99425 1.21449 0.95911 1.04274 0.92607 1.18693 0.93762 0.88872 0.96212 1.21134 1.06548 0.97659 1.28244 0.92809 1.24932 0.96742 0.96939 0.95349 1.69873 1.38775 1.06579 1.37822 0.86768 0.84404 0.78489 0.79406 1.20920 1.21364 1.19978 1.21554 0.98461 1.00040 0.94382 1.21516 0.98179 0.96974 0.96969 1.21044 0.93527 0.98786 0.92986 1.21422 0.99041 0.99183 0.95665 1.22192 0.95502 1.00652 1.00818 1.22293 0.88694 0.86567 0.97085 0.93556 1.86565 1.58229 1.42132 1.50044 0.93403 0.91882 0.92972 0.93861 0.91165 0.91608 0.90880 0.95349 0.96914 0.89338 0.95897 0.93239 0.94847 0.93526 0.93855 0.91091 0.90136 0.95610 0.91052 0.91682 0.92603 0.91193 0.78308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.53 37.16 0.32 -1.27 16 2 C -0.08 -0.98 2.16 -91.29 -0.20 -1.18 16 3 H 0.09 1.15 7.26 -51.93 -0.38 0.77 16 4 C 0.07 1.07 4.00 -4.51 -0.02 1.05 16 5 N -0.55 -8.77 3.92 -231.99 -0.91 -9.68 16 6 C 0.10 1.76 2.13 -67.72 -0.14 1.62 16 7 C -0.13 -2.67 4.39 -26.73 -0.12 -2.79 16 8 C -0.10 -2.44 5.23 -26.73 -0.14 -2.58 16 9 C 0.04 1.05 2.59 -91.77 -0.24 0.81 16 10 C -0.50 -13.09 6.61 -34.44 -0.23 -13.32 16 11 H 0.05 1.41 6.71 -52.49 -0.35 1.06 16 12 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 13 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 14 Si 0.88 21.12 29.54 -169.99 -5.02 16.10 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 18 C -0.11 -2.19 5.41 -26.71 -0.14 -2.34 16 19 C -0.10 -1.86 4.74 -26.71 -0.13 -1.99 16 20 C 0.07 1.05 4.19 -6.74 -0.03 1.02 16 21 C -0.12 -1.46 5.65 -27.10 -0.15 -1.61 16 22 C -0.15 -1.80 4.91 -27.25 -0.13 -1.93 16 23 C 0.11 1.26 3.15 -25.70 -0.08 1.18 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 O -0.56 -6.35 11.84 -35.23 -0.42 -6.76 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.78 7.29 -51.93 -0.38 0.41 16 28 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 29 H 0.04 0.70 6.58 -51.93 -0.34 0.36 16 30 H 0.07 1.05 7.13 -51.93 -0.37 0.68 16 31 H 0.07 1.19 7.81 -51.93 -0.41 0.79 16 32 H 0.07 1.71 5.67 -51.93 -0.29 1.41 16 33 H 0.03 0.57 7.45 -51.93 -0.39 0.18 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.44 4.70 -51.93 -0.24 1.20 16 42 H 0.08 1.38 5.66 -51.93 -0.29 1.08 16 43 H 0.03 0.47 6.03 -51.93 -0.31 0.15 16 44 H 0.07 0.88 7.11 -51.93 -0.37 0.51 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.95 6.56 -51.93 -0.34 0.61 16 48 H 0.37 2.71 9.05 45.56 0.41 3.13 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -27.78 337.64 -9.88 -37.66 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -7.73 Total: 3.97 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -1.53 Total: -21.75 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: -0.28 Total: -34.30 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.42 Total: -6.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.78 -9.88 -37.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330840.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.012 kcal (2) G-P(sol) polarization free energy of solvation -27.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds