Wall clock time and date at job start Tue Mar 31 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.03726 * 2 1 4 4 C 1.50818 * 109.04962 * 118.97763 * 2 1 3 5 5 N 1.47624 * 108.02888 * 215.61593 * 4 2 1 6 6 C 1.46907 * 110.99897 * 150.31365 * 5 4 2 7 7 C 1.52997 * 109.46802 * 71.68944 * 6 5 4 8 8 C 1.53005 * 109.47059 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47052 * 300.00073 * 8 7 6 10 10 C 1.50700 * 109.47116 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00029 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00008 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00239 * 359.72556 * 12 10 9 14 14 Si 1.86809 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47208 * 59.99781 * 14 12 10 16 16 H 1.48498 * 109.47208 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46643 * 299.99986 * 14 12 10 18 18 C 1.52997 * 109.47249 * 60.00043 * 9 8 7 19 19 C 1.52997 * 109.47168 * 191.68931 * 6 5 4 20 20 C 1.39781 * 114.76997 * 277.17396 * 5 4 2 21 21 C 1.54431 * 111.76106 * 62.28269 * 20 5 4 22 22 C 1.50751 * 109.02953 * 282.61336 * 21 20 5 23 23 C 1.53814 * 109.05277 * 241.08416 * 2 1 3 24 24 H 1.09005 * 108.97567 * 77.84892 * 23 2 1 25 25 O 1.42895 * 108.98414 * 319.05528 * 23 2 1 26 26 H 1.08995 * 109.47235 * 301.02462 * 1 2 3 27 27 H 1.09001 * 109.47193 * 61.02384 * 1 2 3 28 28 H 1.09001 * 109.46698 * 181.01791 * 1 2 3 29 29 H 1.08996 * 109.74875 * 95.98548 * 4 2 1 30 30 H 1.08991 * 109.75073 * 335.24977 * 4 2 1 31 31 H 1.08994 * 109.47160 * 311.69322 * 6 5 4 32 32 H 1.09001 * 109.47350 * 60.00160 * 7 6 5 33 33 H 1.08996 * 109.47270 * 300.00049 * 7 6 5 34 34 H 1.08999 * 109.47401 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.46897 * 59.99898 * 8 7 6 36 36 H 1.09001 * 109.47126 * 299.99684 * 9 8 7 37 37 H 0.97002 * 120.00558 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.47350 * 59.99778 * 18 9 8 39 39 H 1.08998 * 109.47454 * 180.02562 * 18 9 8 40 40 H 1.09001 * 109.47126 * 299.99928 * 19 6 5 41 41 H 1.08999 * 109.47441 * 59.99750 * 19 6 5 42 42 H 1.09006 * 109.01924 * 182.87337 * 20 5 4 43 43 H 1.08999 * 109.01811 * 301.69344 * 20 5 4 44 44 H 1.09001 * 109.54225 * 162.75125 * 21 20 5 45 45 H 1.09001 * 109.61891 * 42.52501 * 21 20 5 46 46 H 1.08998 * 108.85492 * 332.20396 * 22 21 20 47 47 H 1.09009 * 108.85315 * 213.81772 * 22 21 20 48 48 H 0.96704 * 114.00589 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0304 0.0000 4 6 2.0223 -0.6907 1.2471 5 7 3.2501 -0.0043 1.6951 6 6 3.4005 -0.0931 3.1538 7 6 3.7708 -1.5260 3.5419 8 6 3.9281 -1.6184 5.0610 9 6 5.0332 -0.6643 5.5183 10 6 5.1877 -0.7549 7.0146 11 1 4.5607 -1.4262 7.5826 12 6 6.1303 0.0184 7.6584 13 7 6.8982 0.8311 6.9662 14 14 6.3222 -0.0944 9.5132 15 1 6.6812 -1.4852 9.8900 16 1 7.3957 0.8309 9.9569 17 1 5.0428 0.2811 10.1669 18 6 4.6629 0.7685 5.1302 19 6 4.5053 0.8611 3.6116 20 6 4.4189 -0.4113 1.0453 21 6 4.3653 -0.1137 -0.4691 22 6 3.5020 -1.1495 -1.1433 23 6 2.0322 -0.7030 -1.2726 24 1 1.9428 -0.0171 -2.1151 25 8 1.2192 -1.8516 -1.5207 26 1 -0.3633 0.5296 0.8806 27 1 -0.3633 0.4978 -0.8990 28 1 -0.3633 -1.0275 0.0183 29 1 2.2436 -1.7349 1.0268 30 1 1.2620 -0.6309 2.0257 31 1 2.4611 0.1818 3.6333 32 1 4.7103 -1.8010 3.0624 33 1 2.9837 -2.2058 3.2157 34 1 4.1915 -2.6393 5.3376 35 1 2.9889 -1.3432 5.5409 36 1 5.9724 -0.9395 5.0384 37 1 7.5611 1.3755 7.4191 38 1 3.7237 1.0438 5.6101 39 1 5.4504 1.4482 5.4556 40 1 5.4447 0.5860 3.1321 41 1 4.2415 1.8818 3.3351 42 1 5.2688 0.1142 1.4809 43 1 4.5522 -1.4831 1.1924 44 1 5.3724 -0.1523 -0.8841 45 1 3.9411 0.8770 -0.6326 46 1 3.5403 -2.0716 -0.5633 47 1 3.8997 -1.3454 -2.1392 48 1 1.4730 -2.3503 -2.3094 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:21 Heat of formation + Delta-G solvation = -71.153408 kcal Electronic energy + Delta-G solvation = -23887.648370 eV Core-core repulsion = 20748.154722 eV Total energy + Delta-G solvation = -3139.493647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.19374 -37.97861 -35.88536 -33.52453 -33.27886 -31.90559 -29.80211 -28.57236 -27.59173 -25.28384 -24.50555 -23.32744 -21.88142 -21.22805 -19.86433 -19.39687 -18.24910 -17.31980 -16.29413 -16.03614 -15.39774 -15.12206 -14.72480 -14.35393 -13.59769 -13.56937 -13.39284 -13.29060 -12.97391 -12.83990 -12.60332 -12.29733 -12.05829 -11.79712 -11.69154 -11.32262 -11.22765 -11.01379 -10.92627 -10.79309 -10.62859 -10.59115 -10.35846 -10.29987 -10.23759 -10.01010 -9.87177 -9.66120 -9.28485 -8.84316 -8.67179 -8.24668 -7.73859 -5.93458 -3.99403 3.34325 3.38943 3.41708 4.10507 4.21638 4.47687 4.62784 4.66757 4.89942 5.03502 5.20293 5.33297 5.36808 5.39805 5.46081 5.53791 5.61592 5.67159 5.73504 5.80465 5.87508 5.94538 5.98359 5.99405 6.09951 6.13115 6.20247 6.28465 6.31748 6.36946 6.45100 6.50004 6.56217 6.64591 6.79013 6.84152 6.96523 7.17413 7.31917 7.50096 7.52965 7.58052 7.79312 7.81030 8.07711 8.21981 8.52863 9.04491 9.64932 11.12071 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.037131 B = 0.003717 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.908290 B = 7530.504203 C = 7732.975885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.091 0.909 4 C 0.072 3.928 5 N -0.552 5.552 6 C 0.095 3.905 7 C -0.144 4.144 8 C -0.104 4.104 9 C 0.050 3.950 10 C -0.513 4.513 11 H 0.052 0.948 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.888 3.112 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.108 4.108 19 C -0.108 4.108 20 C 0.067 3.933 21 C -0.115 4.115 22 C -0.153 4.153 23 C 0.111 3.889 24 H 0.048 0.952 25 O -0.565 6.565 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.022 0.978 37 H 0.259 0.741 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.080 0.920 43 H 0.021 0.979 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -1.724 -17.460 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.109 0.891 4 C -0.055 4.055 5 N -0.274 5.274 6 C -0.012 4.012 7 C -0.183 4.183 8 C -0.142 4.142 9 C 0.031 3.969 10 C -0.552 4.552 11 H 0.070 0.930 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.716 3.284 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.063 4.063 21 C -0.153 4.153 22 C -0.191 4.191 23 C 0.053 3.947 24 H 0.066 0.934 25 O -0.370 6.370 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.110 0.890 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.039 0.961 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.565 -0.929 -17.026 19.081 hybrid contribution 0.638 -1.109 0.634 1.428 sum -7.927 -2.038 -16.391 18.321 Atomic orbital electron populations 1.21695 0.94712 1.02192 1.00923 1.21066 0.95983 1.00089 0.92734 0.89086 1.21785 0.91848 0.95730 0.96118 1.59124 1.02876 1.59407 1.05995 1.21784 0.99797 0.94880 0.84720 1.22181 1.00139 0.96956 0.99026 1.21565 1.00478 1.00014 0.92168 1.18638 0.92584 0.90504 0.95149 1.21208 1.18508 1.22981 0.92456 0.92964 1.24951 0.95686 0.95417 0.97865 1.69864 1.22014 1.25984 1.35101 0.86727 0.77657 0.77812 0.86187 1.20417 1.21355 1.20346 1.21590 1.00987 1.01756 0.90287 1.21708 0.96465 0.97289 0.99092 1.21048 0.93640 0.98149 0.93414 1.21416 0.99165 0.99425 0.95335 1.22183 0.95587 1.00441 1.00847 1.22312 0.88634 0.86607 0.97176 0.93417 1.86567 1.58368 1.42087 1.49966 0.92887 0.93294 0.91963 0.93954 0.90999 0.90733 0.92561 0.94020 0.93784 0.93510 0.95939 0.93079 0.94859 0.89006 0.92914 0.93217 0.90220 0.96093 0.91577 0.90853 0.91345 0.92511 0.78279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.45 37.16 0.31 -1.16 16 2 C -0.08 -0.91 2.16 -91.29 -0.20 -1.11 16 3 H 0.09 1.09 7.26 -51.93 -0.38 0.72 16 4 C 0.07 0.96 4.09 -4.52 -0.02 0.94 16 5 N -0.55 -8.04 3.90 -232.00 -0.90 -8.95 16 6 C 0.10 1.63 2.13 -67.71 -0.14 1.48 16 7 C -0.14 -2.58 4.57 -26.73 -0.12 -2.70 16 8 C -0.10 -2.19 5.14 -26.73 -0.14 -2.33 16 9 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 10 C -0.51 -14.18 8.56 -34.44 -0.29 -14.47 16 11 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 12 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 13 N -0.89 -25.44 11.33 55.43 0.63 -24.81 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.11 -2.51 4.98 -26.76 -0.13 -2.65 16 19 C -0.11 -2.07 5.02 -26.76 -0.13 -2.20 16 20 C 0.07 0.93 4.15 -6.74 -0.03 0.90 16 21 C -0.12 -1.28 5.64 -27.11 -0.15 -1.43 16 22 C -0.15 -1.52 4.90 -27.25 -0.13 -1.66 16 23 C 0.11 1.12 3.16 -25.70 -0.08 1.04 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 O -0.56 -5.63 11.89 -35.23 -0.42 -6.05 16 26 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.72 7.38 -51.93 -0.38 0.33 16 29 H 0.04 0.60 6.60 -51.93 -0.34 0.26 16 30 H 0.07 0.98 7.13 -51.93 -0.37 0.61 16 31 H 0.07 1.31 7.75 -51.93 -0.40 0.91 16 32 H 0.06 1.03 6.57 -51.93 -0.34 0.69 16 33 H 0.04 0.69 7.53 -51.93 -0.39 0.30 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 2.42 6.08 -51.93 -0.32 2.10 16 40 H 0.05 1.03 6.26 -51.93 -0.33 0.71 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.21 5.74 -51.93 -0.30 0.91 16 43 H 0.02 0.31 6.01 -51.93 -0.31 0.00 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.82 7.11 -51.93 -0.37 0.45 16 46 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 47 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.37 2.23 9.05 45.56 0.41 2.65 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -28.42 342.82 -10.03 -38.45 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.92 Total: 2.50 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -1.55 Total: -22.69 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: -0.28 Total: -33.75 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.42 Total: -6.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.42 -10.03 -38.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.706 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds