Wall clock time and date at job start Tue Mar 31 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 108.75116 * 2 1 4 4 C 1.53918 * 108.78855 * 241.65407 * 2 1 3 5 5 N 1.47945 * 113.32843 * 196.97125 * 4 2 1 6 6 C 1.46900 * 110.99858 * 192.18522 * 5 4 2 7 7 C 1.53003 * 109.47169 * 314.65482 * 6 5 4 8 8 C 1.53004 * 109.46771 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46995 * 60.00282 * 8 7 6 10 10 C 1.50700 * 109.47137 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99773 * 120.00206 * 10 9 8 12 12 C 1.37879 * 120.00042 * 300.00231 * 10 9 8 13 13 N 1.31513 * 119.99888 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99989 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.46751 * 90.00398 * 14 12 10 16 16 H 1.48494 * 109.47163 * 210.00346 * 14 12 10 17 17 H 1.48498 * 109.47107 * 330.00604 * 14 12 10 18 18 C 1.52994 * 109.47290 * 299.99519 * 9 8 7 19 19 C 1.52996 * 109.47095 * 194.65459 * 6 5 4 20 20 C 1.44295 * 113.64539 * 318.14024 * 5 4 2 21 21 C 1.53983 * 108.31553 * 95.39876 * 20 5 4 22 22 C 1.45872 * 112.67024 * 278.59008 * 21 20 5 23 23 C 1.50591 * 108.72778 * 118.35770 * 2 1 3 24 24 H 1.08997 * 109.63770 * 92.81342 * 23 2 1 25 25 O 1.42898 * 109.52889 * 332.42664 * 23 2 1 26 26 H 1.09000 * 109.47301 * 178.35076 * 1 2 3 27 27 H 1.09008 * 109.47276 * 298.34657 * 1 2 3 28 28 H 1.08999 * 109.47654 * 58.34866 * 1 2 3 29 29 H 1.08995 * 108.71525 * 75.97463 * 4 2 1 30 30 H 1.09000 * 108.70817 * 317.96546 * 4 2 1 31 31 H 1.09002 * 109.47229 * 74.65280 * 6 5 4 32 32 H 1.08994 * 109.47195 * 300.00050 * 7 6 5 33 33 H 1.09006 * 109.47046 * 60.00060 * 7 6 5 34 34 H 1.08991 * 109.47236 * 299.99795 * 8 7 6 35 35 H 1.09003 * 109.46565 * 180.02562 * 8 7 6 36 36 H 1.09007 * 109.47181 * 59.99735 * 9 8 7 37 37 H 0.97008 * 119.99794 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.47500 * 300.00175 * 18 9 8 39 39 H 1.08997 * 109.47704 * 179.97438 * 18 9 8 40 40 H 1.09000 * 109.46920 * 300.00242 * 19 6 5 41 41 H 1.08999 * 109.46992 * 60.00555 * 19 6 5 42 42 H 1.09004 * 109.69643 * 335.69171 * 20 5 4 43 43 H 1.08999 * 109.73173 * 215.13109 * 20 5 4 44 44 H 1.08998 * 108.84082 * 157.76704 * 21 20 5 45 45 H 1.08996 * 108.83920 * 39.41086 * 21 20 5 46 46 H 1.08998 * 109.04099 * 182.05344 * 22 21 20 47 47 H 1.09004 * 109.04432 * 301.00416 * 22 21 20 48 48 H 0.96698 * 113.99311 * 180.67967 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8804 1.0321 0.0000 4 6 2.0258 -0.6919 -1.2824 5 7 3.4446 -1.1055 -1.2140 6 6 3.9452 -1.4907 -2.5403 7 6 2.9193 -2.3918 -3.2307 8 6 3.4405 -2.7924 -4.6123 9 6 4.7621 -3.5480 -4.4594 10 6 5.2751 -3.9431 -5.8202 11 1 6.2368 -3.5870 -6.1590 12 6 4.5168 -4.7592 -6.6326 13 7 4.9644 -5.1036 -7.8203 14 14 2.8538 -5.3757 -6.0463 15 1 1.7985 -4.4119 -6.4495 16 1 2.5738 -6.7003 -6.6563 17 1 2.8672 -5.5048 -4.5670 18 6 5.7879 -2.6469 -3.7691 19 6 5.2665 -2.2465 -2.3869 20 6 4.3052 -0.1222 -0.6019 21 6 4.4633 -0.4780 0.8879 22 6 3.3399 -0.0197 1.6977 23 6 2.0135 -0.6774 1.2550 24 1 2.1789 -1.7368 1.0591 25 8 1.0363 -0.5257 2.2865 26 1 -0.3634 -1.0272 -0.0296 27 1 -0.3634 0.4880 0.9045 28 1 -0.3634 0.5392 -0.8748 29 1 1.9015 -0.0059 -2.1203 30 1 1.4124 -1.5747 -1.4629 31 1 4.1060 -0.5960 -3.1418 32 1 2.7585 -3.2864 -2.6292 33 1 1.9779 -1.8533 -3.3400 34 1 3.6010 -1.8976 -5.2136 35 1 2.7095 -3.4340 -5.1043 36 1 4.6015 -4.4429 -3.8581 37 1 4.4310 -5.6781 -8.3918 38 1 5.9485 -1.7521 -4.3703 39 1 6.7292 -3.1854 -3.6597 40 1 5.9973 -1.6045 -1.8950 41 1 5.1056 -3.1411 -1.7855 42 1 3.8586 0.8675 -0.6978 43 1 5.2807 -0.1335 -1.0879 44 1 5.3783 -0.0202 1.2639 45 1 4.5483 -1.5604 0.9842 46 1 3.5292 -0.2688 2.7418 47 1 3.2499 1.0623 1.6012 48 1 1.2872 -0.9300 3.1284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:32 Heat of formation + Delta-G solvation = -65.410587 kcal Electronic energy + Delta-G solvation = -23935.409772 eV Core-core repulsion = 20796.165152 eV Total energy + Delta-G solvation = -3139.244620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -40.08284 -38.13873 -36.06514 -33.83866 -33.49195 -32.06589 -30.27282 -29.21871 -27.48387 -25.37182 -24.77724 -23.24584 -21.81927 -20.72502 -20.51660 -19.29582 -18.91040 -17.60391 -16.62652 -16.14481 -15.49201 -15.24569 -14.79393 -14.57082 -14.07887 -13.76629 -13.39640 -13.36282 -13.13297 -12.82962 -12.63455 -12.55437 -12.48480 -11.92633 -11.85784 -11.71323 -11.36997 -11.21825 -11.06053 -11.00566 -10.71580 -10.60094 -10.51745 -10.43267 -10.34538 -9.94884 -9.88157 -9.74170 -9.49912 -8.95249 -8.85379 -8.47359 -8.05572 -6.03564 -4.01871 3.29488 3.40784 3.43442 3.84989 4.10324 4.44731 4.47710 4.63355 4.90109 4.93876 5.01563 5.21825 5.24928 5.27000 5.32174 5.40593 5.46617 5.59113 5.63062 5.68442 5.71979 5.76066 5.80488 5.90820 5.96866 5.98421 6.05445 6.12460 6.14195 6.20173 6.21742 6.27129 6.29263 6.32159 6.38256 6.58031 6.68889 6.79119 6.95033 7.06487 7.25431 7.35921 7.41972 7.51507 7.62588 7.83477 8.57527 9.01154 9.59922 11.09972 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027106 B = 0.004404 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.729735 B = 6356.684752 C = 7009.663724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.066 0.934 4 C 0.067 3.933 5 N -0.548 5.548 6 C 0.096 3.904 7 C -0.117 4.117 8 C -0.118 4.118 9 C 0.014 3.986 10 C -0.512 4.512 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.299 1.299 17 H -0.264 1.264 18 C -0.097 4.097 19 C -0.107 4.107 20 C 0.059 3.941 21 C -0.114 4.114 22 C -0.141 4.141 23 C 0.115 3.885 24 H 0.068 0.932 25 O -0.568 6.568 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 10.824 19.431 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.085 0.915 4 C -0.060 4.060 5 N -0.272 5.272 6 C -0.011 4.011 7 C -0.155 4.155 8 C -0.156 4.156 9 C -0.004 4.004 10 C -0.550 4.550 11 H 0.090 0.910 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.718 3.282 15 H -0.208 1.208 16 H -0.227 1.227 17 H -0.189 1.189 18 C -0.136 4.136 19 C -0.145 4.145 20 C -0.070 4.070 21 C -0.152 4.152 22 C -0.179 4.179 23 C 0.057 3.943 24 H 0.086 0.914 25 O -0.373 6.373 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.850 10.661 19.071 22.618 hybrid contribution -0.632 0.106 0.013 0.641 sum -6.482 10.767 19.083 22.850 Atomic orbital electron populations 1.21604 0.94009 1.02111 1.01531 1.20977 0.97000 0.99322 0.93076 0.91539 1.22471 0.89288 0.99123 0.95128 1.60816 1.01296 1.41963 1.23119 1.21660 0.95716 0.96927 0.86802 1.21776 0.96801 0.99066 0.97837 1.21956 0.99292 1.00411 0.93921 1.19144 0.90935 0.93772 0.96591 1.21112 1.05613 1.29582 0.98679 0.91003 1.25034 0.97902 0.95712 0.94669 1.69909 1.38365 1.36748 1.09282 0.86841 0.84723 0.77123 0.79528 1.20760 1.22701 1.18907 1.21437 0.99057 0.99568 0.93493 1.21671 0.94574 0.99622 0.98668 1.21828 0.97259 0.93205 0.94701 1.20420 0.97333 1.02633 0.94842 1.21241 0.96029 1.00991 0.99652 1.21521 0.86343 0.99289 0.87168 0.91395 1.86536 1.45772 1.81565 1.23449 0.92650 0.91357 0.93387 0.94597 0.90455 0.94375 0.91811 0.93236 0.92452 0.93538 0.95558 0.92786 0.93024 0.92574 0.93184 0.91737 0.94387 0.90814 0.92259 0.90884 0.92174 0.92207 0.78119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.43 37.16 0.31 -1.11 16 2 C -0.08 -0.92 2.15 -91.35 -0.20 -1.12 16 3 H 0.07 0.73 6.66 -51.93 -0.35 0.38 16 4 C 0.07 0.83 3.57 -2.77 -0.01 0.82 16 5 N -0.55 -7.15 3.89 -226.66 -0.88 -8.03 16 6 C 0.10 1.48 1.84 -67.71 -0.12 1.36 16 7 C -0.12 -2.03 4.47 -26.73 -0.12 -2.15 16 8 C -0.12 -2.51 4.68 -26.73 -0.13 -2.63 16 9 C 0.01 0.33 1.69 -91.78 -0.16 0.18 16 10 C -0.51 -14.36 9.14 -34.44 -0.31 -14.67 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 13 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 14 Si 0.89 22.21 24.37 -169.99 -4.14 18.06 16 15 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 16 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 17 H -0.26 -6.33 6.53 56.52 0.37 -5.96 16 18 C -0.10 -1.90 5.15 -26.71 -0.14 -2.03 16 19 C -0.11 -1.72 5.18 -26.71 -0.14 -1.86 16 20 C 0.06 0.67 5.09 -4.70 -0.02 0.64 16 21 C -0.11 -1.11 5.37 -29.59 -0.16 -1.27 16 22 C -0.14 -1.28 5.00 -29.30 -0.15 -1.42 16 23 C 0.12 1.17 2.97 -27.13 -0.08 1.09 16 24 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 25 O -0.57 -5.44 11.35 -35.23 -0.40 -5.84 16 26 H 0.05 0.60 8.11 -51.93 -0.42 0.18 16 27 H 0.07 0.74 7.06 -51.92 -0.37 0.37 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.46 7.89 -51.93 -0.41 0.05 16 30 H 0.08 1.01 6.76 -51.93 -0.35 0.66 16 31 H 0.04 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.79 6.48 -51.93 -0.34 0.45 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 36 H 0.03 0.63 7.20 -51.92 -0.37 0.26 16 37 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.71 6.46 -51.93 -0.34 0.37 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.04 0.42 6.79 -51.93 -0.35 0.07 16 43 H 0.07 0.86 5.95 -51.93 -0.31 0.55 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 46 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 47 H 0.06 0.56 7.59 -51.93 -0.39 0.16 16 48 H 0.37 2.15 9.06 45.56 0.41 2.57 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -30.15 338.89 -9.04 -39.19 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.98 Total: 0.98 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -1.52 Total: -22.31 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.11 Total: -35.18 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.40 Total: -5.84 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.15 -9.04 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.224 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds