Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 110.99975 * 2 1 4 4 C 1.53006 * 109.47055 * 293.94899 * 3 2 1 5 5 C 1.53173 * 109.54396 * 294.55721 * 4 3 2 6 6 C 1.53087 * 109.16693 * 183.15182 * 5 4 3 7 7 O 1.42906 * 109.41347 * 57.60317 * 6 5 4 8 8 C 1.42901 * 114.10076 * 298.84789 * 7 6 5 9 9 C 1.53087 * 109.41383 * 61.15541 * 8 7 6 10 10 C 1.46906 * 110.99647 * 123.94972 * 2 1 3 11 11 C 1.52997 * 109.46907 * 176.05029 * 10 2 1 12 12 C 1.52996 * 109.47165 * 179.97438 * 11 10 2 13 13 C 1.53002 * 109.46969 * 60.00104 * 12 11 10 14 14 C 1.50706 * 109.47305 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99823 * 119.99738 * 14 13 12 16 16 C 1.37879 * 119.99661 * 299.99958 * 14 13 12 17 17 N 1.31515 * 120.00032 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99651 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47389 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47216 * 120.00058 * 18 16 14 21 21 H 1.48501 * 109.47057 * 239.99930 * 18 16 14 22 22 C 1.52997 * 109.47092 * 299.99940 * 13 12 11 23 23 C 1.52993 * 109.47378 * 56.05124 * 10 2 1 24 24 H 1.09002 * 109.47611 * 296.04843 * 1 2 3 25 25 H 1.09001 * 109.46987 * 56.05605 * 1 2 3 26 26 H 1.09004 * 109.47141 * 176.04649 * 1 2 3 27 27 H 1.09000 * 109.47384 * 53.95035 * 3 2 1 28 28 H 1.08997 * 109.47542 * 173.94808 * 3 2 1 29 29 H 1.09000 * 109.53795 * 54.82179 * 4 3 2 30 30 H 1.08998 * 109.52148 * 303.05931 * 5 4 3 31 31 H 1.09006 * 109.52425 * 63.24294 * 5 4 3 32 32 H 1.09004 * 109.48003 * 297.62641 * 6 5 4 33 33 H 1.08992 * 109.48686 * 177.59202 * 6 5 4 34 34 H 1.09004 * 109.47825 * 301.17076 * 8 7 6 35 35 H 1.09004 * 109.49110 * 181.14622 * 8 7 6 36 36 H 1.09005 * 109.52122 * 182.48450 * 9 8 7 37 37 H 1.09001 * 109.52543 * 62.30395 * 9 8 7 38 38 H 1.09000 * 109.47033 * 296.04865 * 10 2 1 39 39 H 1.09000 * 109.47140 * 299.99770 * 11 10 2 40 40 H 1.09001 * 109.47375 * 59.99788 * 11 10 2 41 41 H 1.09004 * 109.47552 * 300.00012 * 12 11 10 42 42 H 1.09004 * 109.47298 * 179.97438 * 12 11 10 43 43 H 1.09000 * 109.47312 * 60.00061 * 13 12 11 44 44 H 0.97003 * 119.99476 * 179.97438 * 17 16 14 45 45 H 1.09000 * 109.47140 * 300.00226 * 22 13 12 46 46 H 1.09001 * 109.47375 * 180.02562 * 22 13 12 47 47 H 1.09004 * 109.46862 * 299.99897 * 23 10 2 48 48 H 1.09004 * 109.46998 * 59.99419 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3184 5 6 2.3513 1.3582 -2.4756 6 6 2.0440 2.0989 -3.7796 7 8 2.4479 3.4642 -3.6568 8 6 1.7733 4.1815 -2.6213 9 6 2.0698 3.5243 -1.2708 10 6 1.9953 -0.7659 1.1377 11 6 3.5216 -0.8263 1.0494 12 6 4.0699 -1.6234 2.2346 13 6 3.5006 -3.0432 2.2014 14 6 4.0401 -3.8283 3.3692 15 1 3.3622 -4.2427 4.1007 16 6 5.3993 -4.0175 3.5036 17 7 6.2247 -3.5132 2.6126 18 14 6.0681 -4.9900 4.9515 19 1 4.9412 -5.4462 5.8043 20 1 6.8196 -6.1689 4.4511 21 1 6.9752 -4.1274 5.7505 22 6 1.9744 -2.9829 2.2897 23 6 1.4261 -2.1856 1.1039 24 1 -0.3634 0.4513 0.9233 25 1 -0.3633 0.5738 -0.8526 26 1 -0.3634 -1.0253 -0.0709 27 1 1.5610 1.9274 0.8309 28 1 3.0796 1.3445 0.1083 29 1 0.5537 2.0036 -1.4719 30 1 3.4262 1.3686 -2.2953 31 1 2.0038 0.3278 -2.5513 32 1 0.9736 2.0532 -3.9800 33 1 2.5879 1.6313 -4.6002 34 1 0.6993 4.1630 -2.8066 35 1 2.1220 5.2141 -2.6074 36 1 1.5209 4.0432 -0.4849 37 1 3.1390 3.5786 -1.0661 38 1 1.7042 -0.2798 2.0688 39 1 3.8127 -1.3124 0.1183 40 1 3.9272 0.1852 1.0735 41 1 3.7788 -1.1369 3.1656 42 1 5.1572 -1.6668 2.1715 43 1 3.7917 -3.5297 1.2705 44 1 7.1809 -3.6460 2.7074 45 1 1.6832 -2.4963 3.2206 46 1 1.5688 -3.9943 2.2665 47 1 0.3387 -2.1426 1.1668 48 1 1.7172 -2.6717 0.1727 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330850.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = -70.882611 kcal Electronic energy + Delta-G solvation = -23370.176406 eV Core-core repulsion = 20230.694501 eV Total energy + Delta-G solvation = -3139.481905 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73742 -38.51001 -35.99975 -33.76070 -32.18846 -31.16195 -30.07374 -28.87584 -27.44207 -25.51115 -23.98190 -23.57757 -22.04872 -21.27761 -20.08620 -19.73521 -18.71371 -16.46349 -16.22647 -16.11086 -15.56549 -14.98289 -14.80783 -14.71011 -14.45600 -13.95836 -13.50239 -13.28922 -13.01473 -12.71092 -12.57385 -12.37073 -12.23749 -11.91704 -11.76500 -11.41006 -11.39477 -11.07241 -10.97345 -10.68989 -10.61743 -10.52308 -10.49127 -10.28146 -10.24614 -10.13066 -9.74743 -9.56366 -9.30582 -8.82149 -8.59070 -8.26247 -8.03407 -5.94066 -3.99985 3.31184 3.39421 3.43198 3.76844 4.07117 4.47085 4.63168 4.76721 4.79124 4.94829 5.11252 5.24309 5.29618 5.35111 5.35174 5.44732 5.46189 5.53016 5.56887 5.65666 5.72934 5.76768 5.85774 5.91855 5.95684 5.99383 6.06632 6.19519 6.22349 6.35543 6.38456 6.46175 6.48194 6.58353 6.73750 6.81248 6.99889 7.08349 7.17442 7.28539 7.36463 7.45226 7.59213 7.79914 8.07650 8.20764 8.52197 9.04516 9.64454 11.11403 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.029676 B = 0.003497 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.305164 B = 8005.914200 C = 8466.977750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.084 4.084 5 C -0.141 4.141 6 C 0.059 3.941 7 O -0.387 6.387 8 C 0.064 3.936 9 C -0.153 4.153 10 C 0.091 3.909 11 C -0.107 4.107 12 C -0.108 4.108 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.887 3.113 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.107 4.107 23 C -0.107 4.107 24 H 0.018 0.982 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.046 0.954 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.030 0.970 42 H 0.092 0.908 43 H 0.026 0.974 44 H 0.258 0.742 45 H 0.044 0.956 46 H 0.047 0.953 47 H 0.044 0.956 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.591 12.946 -9.387 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.072 4.072 4 C -0.103 4.103 5 C -0.178 4.178 6 C -0.018 4.018 7 O -0.306 6.306 8 C -0.013 4.013 9 C -0.191 4.191 10 C -0.016 4.016 11 C -0.145 4.145 12 C -0.146 4.146 13 C 0.031 3.969 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.146 4.146 23 C -0.145 4.145 24 H 0.037 0.963 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.046 0.954 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.111 0.889 43 H 0.044 0.956 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.109 12.800 -9.969 19.116 hybrid contribution -0.100 -0.211 1.841 1.856 sum -10.210 12.589 -8.127 18.132 Atomic orbital electron populations 1.22447 0.88669 1.02143 0.99569 1.62057 1.06809 1.12633 1.44495 1.22207 1.01243 0.88508 0.95226 1.21208 0.99958 0.93599 0.95535 1.22116 1.01494 1.00526 0.93698 1.22654 0.99092 0.81908 0.98113 1.87915 1.65214 1.23322 1.54107 1.22519 0.96220 0.95704 0.86885 1.22236 1.02759 0.96178 0.97902 1.21708 0.96500 0.93744 0.89697 1.21716 0.92313 0.99200 1.01290 1.21607 1.03553 0.96088 0.93378 1.18652 0.88449 0.92740 0.97102 1.21290 0.91694 1.32734 1.09292 0.92859 1.24967 0.97183 0.95782 0.96100 1.69890 1.02743 1.45379 1.34892 0.86612 0.78961 0.79948 0.82919 1.19896 1.21099 1.21135 1.21628 0.99678 0.97724 0.95526 1.21651 0.97975 0.94542 1.00344 0.96304 0.92019 0.91042 0.95422 0.89899 0.91299 0.91150 0.89548 0.93632 0.89051 0.93557 0.89180 0.91200 0.90824 0.95066 0.92080 0.94075 0.95161 0.88932 0.95621 0.93190 0.93737 0.93392 0.93727 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.91 60.06 0.54 0.78 16 2 N -0.54 -7.67 4.17 -234.89 -0.98 -8.65 16 3 C 0.06 0.72 4.17 -3.82 -0.02 0.71 16 4 C -0.08 -0.91 2.20 -90.44 -0.20 -1.11 16 5 C -0.14 -1.58 5.27 -26.60 -0.14 -1.72 16 6 C 0.06 0.60 6.84 37.20 0.25 0.86 16 7 O -0.39 -4.49 10.77 -35.23 -0.38 -4.87 16 8 C 0.06 0.59 6.84 37.20 0.25 0.84 16 9 C -0.15 -1.47 5.42 -26.60 -0.14 -1.61 16 10 C 0.09 1.55 1.94 -67.71 -0.13 1.42 16 11 C -0.11 -2.07 5.00 -26.73 -0.13 -2.21 16 12 C -0.11 -2.52 4.98 -26.73 -0.13 -2.65 16 13 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 14 C -0.51 -14.09 8.56 -34.44 -0.29 -14.38 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 17 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.11 -2.23 5.14 -26.71 -0.14 -2.37 16 23 C -0.11 -1.89 4.84 -26.71 -0.13 -2.02 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.66 6.20 -51.93 -0.32 0.34 16 26 H 0.07 0.88 6.24 -51.93 -0.32 0.56 16 27 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 28 H 0.08 1.17 5.83 -51.93 -0.30 0.87 16 29 H 0.07 0.72 6.26 -51.93 -0.33 0.39 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 1.04 7.87 -51.93 -0.41 0.63 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.04 0.74 6.20 -51.93 -0.32 0.42 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.04 0.70 6.35 -51.93 -0.33 0.37 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -28.26 351.97 -10.10 -38.37 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.95 Total: -0.82 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -0.70 Total: -20.87 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: -0.35 Total: -33.45 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.38 Total: -4.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.26 -10.10 -38.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330850.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.516 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds