Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46420 * 2 1 4 4 C 1.53039 * 109.45858 * 240.02475 * 2 1 3 5 5 C 1.53123 * 109.27546 * 180.80464 * 4 2 1 6 6 C 1.53120 * 109.21163 * 57.62218 * 5 4 2 7 7 H 1.09000 * 109.50719 * 62.32149 * 6 5 4 8 8 C 1.53008 * 109.50107 * 182.43700 * 6 5 4 9 9 O 1.42902 * 109.46878 * 294.99814 * 8 6 5 10 10 C 1.53048 * 109.27450 * 302.43753 * 6 5 4 11 11 N 1.46842 * 109.46195 * 119.97026 * 2 1 3 12 12 C 1.46892 * 111.00192 * 305.85492 * 11 2 1 13 13 C 1.52995 * 109.47257 * 299.99933 * 12 11 2 14 14 C 1.53004 * 109.47182 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47173 * 60.00483 * 14 13 12 16 16 C 1.50701 * 109.47226 * 59.99536 * 15 14 13 17 17 H 1.07997 * 120.00034 * 240.00028 * 16 15 14 18 18 C 1.37873 * 119.99516 * 60.00646 * 16 15 14 19 19 N 1.31516 * 120.00401 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99744 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47047 * 89.99548 * 20 18 16 22 22 H 1.48491 * 109.46993 * 209.99650 * 20 18 16 23 23 H 1.48505 * 109.46775 * 329.99784 * 20 18 16 24 24 C 1.53004 * 109.46744 * 299.99661 * 15 14 13 25 25 C 1.53004 * 109.47144 * 180.02562 * 12 11 2 26 26 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47096 * 299.97746 * 1 2 3 28 28 H 1.08995 * 109.47229 * 59.97613 * 1 2 3 29 29 H 1.08999 * 109.50420 * 60.86660 * 4 2 1 30 30 H 1.09001 * 109.50541 * 300.74014 * 4 2 1 31 31 H 1.09002 * 109.52319 * 177.56011 * 5 4 2 32 32 H 1.08995 * 109.52318 * 297.68693 * 5 4 2 33 33 H 1.08998 * 109.46955 * 55.00115 * 8 6 5 34 34 H 1.09002 * 109.46834 * 175.00130 * 8 6 5 35 35 H 0.96695 * 113.99374 * 179.97438 * 9 8 6 36 36 H 1.08999 * 109.41208 * 299.06816 * 10 6 5 37 37 H 1.09000 * 109.46050 * 179.13236 * 10 6 5 38 38 H 1.09004 * 109.47448 * 60.00373 * 12 11 2 39 39 H 1.09001 * 109.47559 * 300.00133 * 13 12 11 40 40 H 1.08996 * 109.46983 * 60.00302 * 13 12 11 41 41 H 1.08996 * 109.47020 * 300.00030 * 14 13 12 42 42 H 1.09000 * 109.46827 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.47196 * 179.97438 * 15 14 13 44 44 H 0.97001 * 119.99524 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.47269 * 300.00342 * 24 15 14 46 46 H 1.08998 * 109.46748 * 180.02562 * 24 15 14 47 47 H 1.09000 * 109.47257 * 299.99826 * 25 12 11 48 48 H 1.08996 * 109.47235 * 60.00105 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5709 -0.7361 -1.2356 6 6 4.0561 -1.4179 0.0467 7 1 3.7148 -2.4530 0.0601 8 6 5.5849 -1.3827 0.0969 9 8 6.1148 -2.1686 -0.9724 10 6 3.4865 -0.6776 1.2591 11 7 2.0193 -0.6916 1.1994 12 6 1.4373 -0.1104 2.4165 13 6 1.8228 1.3671 2.5107 14 6 1.2162 1.9727 3.7781 15 6 1.7478 1.2278 5.0042 16 6 3.2487 1.3530 5.0564 17 1 3.8659 0.4673 5.0254 18 6 3.8339 2.5983 5.1437 19 7 3.0823 3.6769 5.1810 20 14 5.6944 2.7536 5.2090 21 1 6.2299 2.8726 3.8291 22 1 6.0631 3.9621 5.9890 23 1 6.2689 1.5493 5.8608 24 6 1.3623 -0.2499 4.9100 25 6 1.9700 -0.8551 3.6423 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3633 0.5142 -0.8897 29 1 1.6894 -0.1982 -2.1399 30 1 1.6659 -1.7448 -1.2576 31 1 3.9379 -1.2864 -2.1020 32 1 3.9456 0.2869 -1.2684 33 1 5.9281 -0.3531 -0.0041 34 1 5.9265 -1.7878 1.0495 35 1 7.0811 -2.1912 -1.0024 36 1 3.8404 0.3534 1.2531 37 1 3.8175 -1.1697 2.1736 38 1 0.3517 -0.2011 2.3793 39 1 2.9084 1.4578 2.5480 40 1 1.4437 1.8980 1.6375 41 1 0.1306 1.8821 3.7404 42 1 1.4904 3.0255 3.8450 43 1 1.3160 1.6594 5.9071 44 1 3.4941 4.5531 5.2420 45 1 0.2768 -0.3405 4.8722 46 1 1.7407 -0.7805 5.7837 47 1 1.6957 -1.9079 3.5755 48 1 3.0555 -0.7641 3.6794 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = -74.279582 kcal Electronic energy + Delta-G solvation = -24520.537370 eV Core-core repulsion = 21380.908162 eV Total energy + Delta-G solvation = -3139.629208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88215 -37.49005 -36.31763 -33.49847 -32.66845 -31.56379 -29.54457 -28.26607 -27.83931 -24.86727 -24.26079 -23.49336 -21.86299 -20.81204 -20.09220 -19.20233 -18.34154 -17.23438 -15.75210 -15.68808 -15.13046 -14.89741 -14.68545 -14.20215 -14.02661 -13.71369 -13.44373 -13.12229 -12.95187 -12.53327 -12.47691 -12.13048 -11.74582 -11.63478 -11.40785 -11.36231 -11.14004 -11.01298 -10.86882 -10.72380 -10.64487 -10.52344 -10.42028 -10.17910 -9.99305 -9.88003 -9.70401 -9.62038 -9.12363 -8.89936 -8.62117 -8.28745 -7.62608 -5.96194 -4.00266 3.26476 3.34902 3.37001 4.01554 4.43037 4.51716 4.86683 4.98451 5.03560 5.31282 5.34169 5.41823 5.51145 5.55415 5.63564 5.70403 5.75420 5.78575 5.88622 5.90633 5.96872 6.08423 6.11371 6.17621 6.18741 6.31165 6.33201 6.37900 6.45052 6.52237 6.57711 6.58396 6.64445 6.80112 6.81269 6.90340 7.13231 7.20024 7.42818 7.53452 7.57166 7.63956 7.70176 7.77493 7.97676 8.18143 8.50643 9.02258 9.62463 11.09567 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.006749 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.523132 B = 4147.804692 C = 5266.441537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 H 0.043 0.957 4 C -0.109 4.109 5 C -0.110 4.110 6 C -0.083 4.083 7 H 0.081 0.919 8 C 0.079 3.921 9 O -0.574 6.574 10 C 0.058 3.942 11 N -0.527 5.527 12 C 0.089 3.911 13 C -0.129 4.129 14 C -0.103 4.103 15 C 0.043 3.957 16 C -0.497 4.497 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.891 5.891 20 Si 0.880 3.120 21 H -0.283 1.283 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.106 4.106 25 C -0.100 4.100 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.375 0.625 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.031 0.969 41 H 0.012 0.988 42 H 0.088 0.912 43 H 0.023 0.977 44 H 0.258 0.742 45 H 0.033 0.967 46 H 0.046 0.954 47 H 0.043 0.957 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -8.003 -11.172 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 H 0.061 0.939 4 C -0.147 4.147 5 C -0.148 4.148 6 C -0.102 4.102 7 H 0.100 0.900 8 C 0.001 3.999 9 O -0.379 6.379 10 C -0.071 4.071 11 N -0.251 5.251 12 C -0.018 4.018 13 C -0.168 4.168 14 C -0.142 4.142 15 C 0.025 3.975 16 C -0.536 4.536 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.708 3.292 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.144 4.144 25 C -0.137 4.137 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.222 0.778 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.031 0.969 42 H 0.106 0.894 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.639 -8.390 -11.312 14.098 hybrid contribution 1.983 1.264 0.248 2.365 sum 1.345 -7.126 -11.064 13.228 Atomic orbital electron populations 1.21888 0.94836 1.02061 1.01579 1.21577 0.95078 0.95906 0.90495 0.93927 1.21624 0.95365 1.01118 0.96616 1.21545 0.95530 1.00105 0.97576 1.21155 0.92258 1.01241 0.95500 0.90018 1.22214 0.94547 0.94013 0.89126 1.86455 1.25410 1.73356 1.52655 1.22038 0.88472 0.99121 0.97420 1.62210 1.06238 1.54492 1.02123 1.21767 0.98321 0.93529 0.88224 1.21975 1.02369 0.94730 0.97679 1.21442 0.94674 1.03378 0.94683 1.18693 0.95716 0.89095 0.94031 1.21136 0.91460 0.91881 1.49108 0.92819 1.24929 0.97251 0.96154 0.95618 1.69871 1.34335 0.97689 1.51126 0.86782 0.86855 0.77609 0.77910 1.20935 1.21338 1.19974 1.21552 0.97372 0.99543 0.95958 1.21523 1.01442 0.96973 0.93789 0.92192 0.92016 0.92898 0.92126 0.91421 0.91643 0.92691 0.93712 0.93435 0.77847 0.94210 0.89918 0.90890 0.91077 0.95022 0.96921 0.89362 0.95894 0.93229 0.94838 0.93532 0.93853 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.77 37.16 0.33 -1.62 16 2 C 0.08 1.14 1.87 -67.72 -0.13 1.01 16 3 H 0.04 0.69 6.63 -51.93 -0.34 0.35 16 4 C -0.11 -1.40 5.38 -26.65 -0.14 -1.54 16 5 C -0.11 -1.44 5.15 -26.61 -0.14 -1.58 16 6 C -0.08 -1.14 2.59 -90.53 -0.23 -1.38 16 7 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 8 C 0.08 0.99 6.43 37.16 0.24 1.23 16 9 O -0.57 -6.74 13.25 -35.23 -0.47 -7.21 16 10 C 0.06 0.92 3.96 -3.83 -0.02 0.90 16 11 N -0.53 -8.46 4.52 -218.76 -0.99 -9.45 16 12 C 0.09 1.60 1.77 -67.72 -0.12 1.48 16 13 C -0.13 -2.64 4.25 -26.73 -0.11 -2.75 16 14 C -0.10 -2.38 5.23 -26.73 -0.14 -2.52 16 15 C 0.04 1.04 2.59 -91.77 -0.24 0.80 16 16 C -0.50 -12.95 6.61 -34.44 -0.23 -13.18 16 17 H 0.05 1.39 6.71 -52.49 -0.35 1.04 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 20 Si 0.88 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.11 -2.17 5.42 -26.70 -0.14 -2.32 16 25 C -0.10 -1.87 4.62 -26.70 -0.12 -2.00 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.89 6.27 -51.93 -0.33 0.56 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.38 2.69 9.12 45.56 0.42 3.10 16 36 H 0.04 0.70 6.71 -51.93 -0.35 0.35 16 37 H 0.08 1.37 5.90 -51.93 -0.31 1.07 16 38 H 0.07 1.30 6.21 -51.93 -0.32 0.98 16 39 H 0.07 1.63 5.71 -51.93 -0.30 1.33 16 40 H 0.03 0.62 6.52 -51.93 -0.34 0.28 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.42 4.69 -51.93 -0.24 1.17 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -27.86 342.47 -9.80 -37.66 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.82 Total: 4.28 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.29 Total: -21.92 kcal Atomic # 7 Polarization: -33.44 SS G_CDS: -0.36 Total: -33.80 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.47 Total: -7.21 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.86 -9.80 -37.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.618 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds