Wall clock time and date at job start Tue Mar 31 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 108.82295 * 2 1 4 4 C 1.50633 * 108.81537 * 241.51306 * 2 1 3 5 5 C 1.54427 * 109.09937 * 146.17589 * 4 2 1 6 6 N 1.39780 * 111.70226 * 77.44670 * 5 4 2 7 7 C 1.46901 * 110.99998 * 170.90249 * 6 5 4 8 8 C 1.53005 * 109.47362 * 51.70736 * 7 6 5 9 9 C 1.52996 * 109.47471 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47108 * 59.99988 * 9 8 7 11 11 C 1.50696 * 109.47419 * 59.99849 * 10 9 8 12 12 H 1.07999 * 120.00472 * 239.99744 * 11 10 9 13 13 C 1.37876 * 119.99984 * 60.00234 * 11 10 9 14 14 N 1.31515 * 120.00030 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00197 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47222 * 89.99531 * 15 13 11 17 17 H 1.48503 * 109.47113 * 209.99881 * 15 13 11 18 18 H 1.48504 * 109.46775 * 329.99753 * 15 13 11 19 19 C 1.53002 * 109.47015 * 299.99647 * 10 9 8 20 20 C 1.53002 * 109.47161 * 60.00401 * 19 10 9 21 21 C 1.47632 * 114.76698 * 297.75956 * 6 5 4 22 22 C 1.50811 * 108.03974 * 82.81919 * 21 6 5 23 23 C 1.53817 * 111.62045 * 264.93539 * 22 21 6 24 24 H 1.08998 * 108.98590 * 280.39965 * 23 22 21 25 25 O 1.42908 * 108.98172 * 161.59773 * 23 22 21 26 26 H 1.09002 * 109.47753 * 301.49542 * 1 2 3 27 27 H 1.09000 * 109.47012 * 61.49568 * 1 2 3 28 28 H 1.09005 * 109.46741 * 181.49023 * 1 2 3 29 29 H 1.08997 * 109.43663 * 26.33145 * 4 2 1 30 30 H 1.09007 * 109.58643 * 266.10447 * 4 2 1 31 31 H 1.09004 * 109.02379 * 316.90044 * 5 4 2 32 32 H 1.09001 * 109.02333 * 197.99635 * 5 4 2 33 33 H 1.09000 * 109.47535 * 171.70188 * 7 6 5 34 34 H 1.09010 * 109.46459 * 300.00157 * 8 7 6 35 35 H 1.08994 * 109.47088 * 59.99423 * 8 7 6 36 36 H 1.08998 * 109.47137 * 299.99904 * 9 8 7 37 37 H 1.08996 * 109.46947 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47046 * 180.02562 * 10 9 8 39 39 H 0.96997 * 120.00271 * 180.02562 * 14 13 11 40 40 H 1.08997 * 109.47379 * 300.00738 * 19 10 9 41 41 H 1.09001 * 109.47176 * 179.97438 * 19 10 9 42 42 H 1.08990 * 109.47882 * 179.97438 * 20 19 10 43 43 H 1.09007 * 109.47076 * 59.99543 * 20 19 10 44 44 H 1.09003 * 109.74600 * 202.45337 * 21 6 5 45 45 H 1.09000 * 109.74477 * 323.18502 * 21 6 5 46 46 H 1.08998 * 109.05448 * 25.49310 * 22 21 6 47 47 H 1.09002 * 109.05121 * 144.39110 * 22 21 6 48 48 H 0.96700 * 113.99809 * 60.00314 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8817 1.0318 0.0000 4 6 2.0158 -0.6801 -1.2532 5 6 3.3263 -0.0078 -1.7174 6 7 4.4194 -0.4224 -0.9513 7 6 5.6814 0.0524 -1.5344 8 6 5.5934 1.5597 -1.7823 9 6 6.9075 2.0541 -2.3903 10 6 7.1592 1.3331 -3.7160 11 6 6.0262 1.6204 -4.6672 12 1 5.4287 0.8091 -5.0561 13 6 5.7525 2.9189 -5.0411 14 7 6.4798 3.9069 -4.5673 15 14 4.3476 3.2751 -6.2196 16 1 3.0983 3.4966 -5.4480 17 1 4.6623 4.4911 -7.0119 18 1 4.1654 2.1207 -7.1358 19 6 7.2473 -0.1741 -3.4681 20 6 5.9332 -0.6686 -2.8602 21 6 4.3364 -0.0782 0.4820 22 6 3.4997 -1.1294 1.1670 23 6 2.0282 -0.6962 1.2821 24 1 1.9259 -0.0075 2.1208 25 8 1.2218 -1.8502 1.5277 26 1 -0.3635 0.5369 0.8763 27 1 -0.3633 0.4904 -0.9031 28 1 -0.3633 -1.0274 0.0267 29 1 1.2608 -0.5848 -2.0335 30 1 2.1997 -1.7349 -1.0487 31 1 3.2211 1.0737 -1.6301 32 1 3.5065 -0.2639 -2.7614 33 1 6.5006 -0.1552 -0.8461 34 1 4.7741 1.7674 -2.4707 35 1 5.4136 2.0733 -0.8380 36 1 7.7270 1.8463 -1.7023 37 1 6.8446 3.1278 -2.5673 38 1 8.0956 1.6850 -4.1489 39 1 6.2870 4.8205 -4.8300 40 1 8.0668 -0.3819 -2.7801 41 1 7.4262 -0.6879 -4.4127 42 1 5.9957 -1.7424 -2.6839 43 1 5.1137 -0.4608 -3.5482 44 1 5.3363 -0.0631 0.9156 45 1 3.8685 0.8992 0.5994 46 1 3.5542 -2.0558 0.5954 47 1 3.8978 -1.3055 2.1663 48 1 1.4490 -2.3231 2.3400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:19 Heat of formation + Delta-G solvation = -68.014765 kcal Electronic energy + Delta-G solvation = -24388.344622 eV Core-core repulsion = 21248.987077 eV Total energy + Delta-G solvation = -3139.357546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.05313 -37.99363 -35.89512 -33.94168 -32.37488 -31.56223 -29.62229 -29.11425 -27.28184 -25.13793 -24.30724 -23.44228 -21.93463 -21.17236 -19.78604 -19.30636 -18.37443 -17.16172 -15.96199 -15.70264 -15.27074 -14.85701 -14.70504 -14.34882 -13.73015 -13.46024 -13.41326 -13.17922 -12.88564 -12.77391 -12.48474 -12.31213 -11.86541 -11.53549 -11.43269 -11.33580 -11.07537 -11.01076 -10.89898 -10.82668 -10.56284 -10.51761 -10.29384 -10.25234 -10.09452 -9.91177 -9.72254 -9.63477 -9.09124 -8.89093 -8.61073 -8.26595 -7.56871 -5.94189 -3.98263 3.30337 3.38087 3.41005 4.20441 4.33039 4.46194 4.74904 4.78290 4.97073 5.16253 5.35963 5.40876 5.47835 5.49306 5.56812 5.68548 5.76622 5.77934 5.87191 5.91465 5.95697 6.04572 6.13764 6.16622 6.20449 6.34079 6.36885 6.41619 6.44998 6.51059 6.58689 6.59287 6.66415 6.80158 6.81924 6.91888 7.14736 7.22976 7.43626 7.55581 7.59575 7.68639 7.78840 7.91545 8.00276 8.19264 8.52468 9.04340 9.64759 11.11568 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.005421 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.232469 B = 5164.194286 C = 5954.389581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.112 4.112 5 C 0.067 3.933 6 N -0.548 5.548 7 C 0.096 3.904 8 C -0.128 4.128 9 C -0.104 4.104 10 C 0.043 3.957 11 C -0.498 4.498 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.881 3.119 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.107 4.107 20 C -0.096 4.096 21 C 0.069 3.931 22 C -0.148 4.148 23 C 0.113 3.887 24 H 0.045 0.955 25 O -0.564 6.564 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.026 0.974 36 H 0.012 0.988 37 H 0.089 0.911 38 H 0.023 0.977 39 H 0.258 0.742 40 H 0.032 0.968 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.086 0.914 47 H 0.057 0.943 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.150 -8.362 12.064 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.062 4.062 6 N -0.271 5.271 7 C -0.011 4.011 8 C -0.166 4.166 9 C -0.142 4.142 10 C 0.025 3.975 11 C -0.536 4.536 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.531 5.531 15 Si 0.709 3.291 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.145 4.145 20 C -0.134 4.134 21 C -0.059 4.059 22 C -0.186 4.186 23 C 0.054 3.946 24 H 0.063 0.937 25 O -0.369 6.369 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.045 0.955 36 H 0.030 0.970 37 H 0.107 0.893 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.076 0.924 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.444 -8.448 11.464 16.068 hybrid contribution -0.493 1.131 -0.002 1.234 sum -7.937 -7.317 11.462 15.745 Atomic orbital electron populations 1.21754 0.94933 1.02265 1.00685 1.21047 0.96307 0.99035 0.93849 0.90876 1.21555 0.96531 1.00936 0.95962 1.21054 0.89870 0.96945 0.98362 1.59137 1.03221 1.63355 1.01415 1.21747 0.89202 0.94268 0.95892 1.21983 1.01674 0.94426 0.98563 1.21453 0.92798 1.03887 0.96101 1.18690 0.96985 0.88814 0.93034 1.21141 1.14810 0.91988 1.25648 0.92762 1.24926 0.96248 0.96563 0.96194 1.69869 1.39520 0.99251 1.44472 0.86770 0.82988 0.77833 0.81506 1.20852 1.21381 1.19957 1.21552 0.95050 0.99712 0.98153 1.21453 0.99303 0.97149 0.95488 1.21624 0.99311 0.96285 0.88672 1.22165 0.94644 1.01477 1.00358 1.22278 0.89216 0.86460 0.96615 0.93747 1.86549 1.60597 1.42780 1.46999 0.93563 0.93093 0.91713 0.91675 0.90682 0.95635 0.90201 0.91742 0.90620 0.95520 0.96968 0.89310 0.95907 0.93246 0.94909 0.93509 0.93891 0.91183 0.91168 0.94340 0.89512 0.92392 0.78291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.53 37.16 0.32 -1.31 16 2 C -0.08 -1.06 2.08 -91.19 -0.19 -1.25 16 3 H 0.07 0.98 6.58 -51.93 -0.34 0.64 16 4 C -0.11 -1.55 5.15 -27.17 -0.14 -1.69 16 5 C 0.07 1.08 3.99 -6.75 -0.03 1.06 16 6 N -0.55 -8.61 3.86 -231.98 -0.90 -9.50 16 7 C 0.10 1.72 2.14 -67.71 -0.14 1.57 16 8 C -0.13 -2.62 4.23 -26.73 -0.11 -2.73 16 9 C -0.10 -2.40 5.24 -26.73 -0.14 -2.54 16 10 C 0.04 1.05 2.59 -91.77 -0.24 0.81 16 11 C -0.50 -13.05 6.61 -34.44 -0.23 -13.28 16 12 H 0.05 1.42 6.71 -52.49 -0.35 1.07 16 13 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 14 N -0.89 -25.11 11.32 55.43 0.63 -24.48 16 15 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.11 -2.19 5.41 -26.73 -0.14 -2.34 16 20 C -0.10 -1.82 4.93 -26.73 -0.13 -1.95 16 21 C 0.07 0.93 4.82 -4.52 -0.02 0.90 16 22 C -0.15 -1.68 5.01 -27.40 -0.14 -1.82 16 23 C 0.11 1.26 3.13 -25.69 -0.08 1.18 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 O -0.56 -6.04 11.84 -35.23 -0.42 -6.45 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.58 8.00 -51.93 -0.42 0.16 16 28 H 0.06 0.79 7.29 -51.93 -0.38 0.41 16 29 H 0.06 0.87 7.62 -51.93 -0.40 0.48 16 30 H 0.07 1.09 7.10 -51.92 -0.37 0.72 16 31 H 0.03 0.45 6.00 -51.93 -0.31 0.14 16 32 H 0.08 1.42 6.01 -51.93 -0.31 1.11 16 33 H 0.06 1.14 7.60 -51.93 -0.39 0.74 16 34 H 0.08 1.73 5.61 -51.92 -0.29 1.44 16 35 H 0.03 0.52 7.78 -51.93 -0.40 0.11 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.44 4.89 -51.92 -0.25 1.18 16 44 H 0.07 0.93 7.49 -51.93 -0.39 0.54 16 45 H 0.04 0.54 6.66 -51.93 -0.35 0.19 16 46 H 0.09 1.11 7.25 -51.93 -0.38 0.74 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.37 2.47 9.08 45.56 0.41 2.88 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -27.63 338.24 -9.87 -37.51 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.75 Total: 3.60 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -1.51 Total: -21.83 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: -0.27 Total: -33.98 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.42 Total: -6.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.63 -9.87 -37.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.508 kcal (2) G-P(sol) polarization free energy of solvation -27.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds