Wall clock time and date at job start Tue Mar 31 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.57121 * 2 1 4 4 C 1.54512 * 109.57004 * 239.75575 * 2 1 3 5 5 C 1.45872 * 111.58596 * 163.00530 * 4 2 1 6 6 N 1.47801 * 112.92103 * 61.32536 * 5 4 2 7 7 C 1.46899 * 110.99754 * 153.85664 * 6 5 4 8 8 C 1.53000 * 109.46737 * 189.25669 * 7 6 5 9 9 C 1.53006 * 109.47125 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.46968 * 59.99748 * 9 8 7 11 11 C 1.50704 * 109.46839 * 180.02562 * 10 9 8 12 12 H 1.08005 * 120.00031 * 120.00028 * 11 10 9 13 13 C 1.37875 * 120.00077 * 299.99811 * 11 10 9 14 14 N 1.31508 * 120.00240 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99742 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.46946 * 90.00079 * 15 13 11 17 17 H 1.48500 * 109.46862 * 209.99647 * 15 13 11 18 18 H 1.48496 * 109.47210 * 329.99988 * 15 13 11 19 19 C 1.53000 * 109.47403 * 300.00082 * 10 9 8 20 20 C 1.52999 * 109.46964 * 69.25658 * 7 6 5 21 21 C 1.44271 * 109.45464 * 276.72542 * 6 5 4 22 22 C 1.54070 * 111.97631 * 96.44614 * 21 6 5 23 23 C 1.50460 * 109.57872 * 120.37967 * 2 1 3 24 24 H 1.09003 * 108.77054 * 91.04271 * 23 2 1 25 25 O 1.42892 * 108.76940 * 332.88062 * 23 2 1 26 26 H 1.09004 * 109.47068 * 180.25190 * 1 2 3 27 27 H 1.08994 * 109.47711 * 60.24645 * 1 2 3 28 28 H 1.09004 * 109.47144 * 300.24127 * 1 2 3 29 29 H 1.08997 * 109.06141 * 283.55117 * 4 2 1 30 30 H 1.09008 * 109.05732 * 42.46921 * 4 2 1 31 31 H 1.08995 * 108.78976 * 182.20878 * 5 4 2 32 32 H 1.09000 * 108.79520 * 300.54682 * 5 4 2 33 33 H 1.08991 * 109.47171 * 309.25558 * 7 6 5 34 34 H 1.09003 * 109.47132 * 299.99523 * 8 7 6 35 35 H 1.08993 * 109.47365 * 60.00375 * 8 7 6 36 36 H 1.08999 * 109.46690 * 300.00136 * 9 8 7 37 37 H 1.08995 * 109.47308 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.47736 * 60.00338 * 10 9 8 39 39 H 0.97004 * 120.00480 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.47132 * 300.00734 * 19 10 9 41 41 H 1.08993 * 109.47777 * 180.02562 * 19 10 9 42 42 H 1.08995 * 109.47286 * 299.99757 * 20 7 6 43 43 H 1.08999 * 109.47098 * 60.00159 * 20 7 6 44 44 H 1.09002 * 108.98036 * 217.08672 * 21 6 5 45 45 H 1.08999 * 108.97987 * 335.88509 * 21 6 5 46 46 H 1.08999 * 108.91643 * 79.63644 * 22 21 6 47 47 H 1.08998 * 108.91734 * 198.19114 * 22 21 6 48 48 H 0.96704 * 114.00438 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0475 -0.7333 -1.2577 5 6 3.4495 -0.4266 -1.5189 6 7 4.3448 -0.8458 -0.4201 7 6 5.7022 -1.1063 -0.9174 8 6 6.5355 -1.7540 0.1903 9 6 7.9496 -2.0249 -0.3274 10 6 8.5995 -0.7057 -0.7496 11 6 9.9921 -0.9726 -1.2601 12 1 10.2561 -0.7067 -2.2731 13 6 10.9291 -1.5562 -0.4341 14 7 12.1445 -1.7887 -0.8794 15 14 10.4722 -2.0168 1.3177 16 1 9.9482 -3.4060 1.3436 17 1 11.6754 -1.9253 2.1833 18 1 9.4300 -1.0852 1.8186 19 6 7.7662 -0.0580 -1.8573 20 6 6.3524 0.2126 -1.3399 21 6 4.3556 0.1697 0.6048 22 6 3.3714 -0.1521 1.7456 23 6 2.0341 -0.7169 1.2230 24 1 2.1694 -1.7711 0.9808 25 8 1.0536 -0.6080 2.2567 26 1 -0.3633 -1.0277 0.0045 27 1 -0.3634 0.5100 -0.8921 28 1 -0.3633 0.5176 0.8878 29 1 1.9393 -1.8082 -1.1128 30 1 1.4506 -0.4295 -2.1177 31 1 3.7553 -0.9340 -2.4338 32 1 3.5528 0.6488 -1.6630 33 1 5.6524 -1.7778 -1.7744 34 1 6.5853 -1.0824 1.0474 35 1 6.0723 -2.6936 0.4913 36 1 7.9002 -2.6962 -1.1847 37 1 8.5434 -2.4859 0.4618 38 1 8.6490 -0.0343 0.1076 39 1 12.8037 -2.1996 -0.2984 40 1 7.7168 -0.7295 -2.7145 41 1 8.2294 0.8815 -2.1583 42 1 5.7588 0.6740 -2.1290 43 1 6.4022 0.8841 -0.4828 44 1 5.3620 0.2474 1.0161 45 1 4.0801 1.1256 0.1595 46 1 3.8287 -0.8847 2.4107 47 1 3.1737 0.7596 2.3094 48 1 1.3022 -1.0458 3.0823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:24 Heat of formation + Delta-G solvation = -65.025937 kcal Electronic energy + Delta-G solvation = -23951.041290 eV Core-core repulsion = 20811.813350 eV Total energy + Delta-G solvation = -3139.227940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23749 -38.19527 -36.15003 -34.24147 -32.39862 -31.72417 -30.22607 -29.97926 -27.84218 -25.43099 -23.94975 -23.46803 -22.39384 -21.07629 -20.12435 -19.73086 -18.56157 -17.19272 -16.62650 -16.04409 -15.92429 -15.00737 -14.80763 -14.56382 -13.99678 -13.76747 -13.59351 -13.30527 -13.04119 -12.83715 -12.71068 -12.56154 -12.43513 -11.87457 -11.78478 -11.70194 -11.56036 -11.35307 -11.05372 -10.95537 -10.76730 -10.55419 -10.51882 -10.40338 -10.23776 -10.05671 -9.89512 -9.81487 -9.56130 -9.00378 -8.91812 -8.51638 -8.10908 -6.05963 -4.04593 3.27572 3.37950 3.40320 3.90814 4.14277 4.42057 4.56103 4.74857 4.84948 5.05518 5.11150 5.17750 5.22958 5.25522 5.29193 5.34694 5.46850 5.54105 5.64537 5.65551 5.73124 5.78206 5.85711 5.89932 5.93010 5.97242 6.04338 6.06997 6.11234 6.16156 6.19967 6.22920 6.29114 6.32126 6.39909 6.55997 6.58683 6.73144 6.91557 6.99208 7.24512 7.28001 7.32838 7.57127 7.58170 7.80475 8.54666 8.98489 9.57219 11.07556 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032075 B = 0.004221 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.753344 B = 6631.837713 C = 7188.336013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.081 4.081 3 H 0.069 0.931 4 C -0.109 4.109 5 C 0.051 3.949 6 N -0.527 5.527 7 C 0.090 3.910 8 C -0.110 4.110 9 C -0.118 4.118 10 C 0.015 3.985 11 C -0.513 4.513 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.904 5.904 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.299 1.299 18 H -0.266 1.266 19 C -0.094 4.094 20 C -0.149 4.149 21 C 0.052 3.948 22 C -0.141 4.141 23 C 0.120 3.880 24 H 0.058 0.942 25 O -0.573 6.573 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.782 2.580 3.037 22.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.100 4.100 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.076 4.076 6 N -0.249 5.249 7 C -0.017 4.017 8 C -0.147 4.147 9 C -0.156 4.156 10 C -0.004 4.004 11 C -0.550 4.550 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.227 1.227 18 H -0.191 1.191 19 C -0.132 4.132 20 C -0.188 4.188 21 C -0.077 4.077 22 C -0.180 4.180 23 C 0.061 3.939 24 H 0.076 0.924 25 O -0.378 6.378 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -22.111 2.396 2.809 22.417 hybrid contribution 0.694 0.084 1.077 1.284 sum -21.416 2.480 3.886 21.907 Atomic orbital electron populations 1.21560 0.94475 1.01748 1.01088 1.20916 0.96339 0.99423 0.93315 0.91244 1.20655 0.95547 1.01314 0.97154 1.21018 0.93402 0.98847 0.94325 1.61838 1.09724 1.42969 1.10390 1.21835 0.85752 0.96337 0.97788 1.21653 0.96147 0.99795 0.97151 1.21957 0.92977 1.00740 0.99951 1.19142 0.94698 0.92092 0.94486 1.21096 0.93305 1.40067 1.00575 0.91001 1.25035 0.94836 0.95265 0.98189 1.69903 1.03868 1.43864 1.36580 0.86828 0.76962 0.79059 0.85240 1.20618 1.22704 1.19129 1.21365 0.92503 1.00233 0.99136 1.22292 0.98482 0.97695 1.00324 1.21886 0.99526 0.92967 0.93284 1.22680 0.95793 1.01270 0.98258 1.21550 0.86094 0.99137 0.87093 0.92401 1.86565 1.45835 1.80173 1.25242 0.92964 0.93533 0.91886 0.91207 0.91315 0.91301 0.94541 0.90077 0.92758 0.92483 0.92164 0.93525 0.95864 0.92748 0.92780 0.92892 0.93261 0.92383 0.90652 0.94250 0.91851 0.91627 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.40 37.15 0.31 -0.95 16 2 C -0.08 -0.83 2.34 -91.10 -0.21 -1.04 16 3 H 0.07 0.75 7.16 -51.93 -0.37 0.38 16 4 C -0.11 -1.06 4.92 -29.31 -0.14 -1.21 16 5 C 0.05 0.57 4.15 -6.70 -0.03 0.54 16 6 N -0.53 -6.70 4.19 -231.55 -0.97 -7.67 16 7 C 0.09 1.35 2.12 -67.71 -0.14 1.21 16 8 C -0.11 -1.86 5.18 -26.73 -0.14 -2.00 16 9 C -0.12 -2.47 4.68 -26.73 -0.13 -2.60 16 10 C 0.01 0.33 1.69 -91.77 -0.16 0.18 16 11 C -0.51 -14.28 9.14 -34.44 -0.31 -14.59 16 12 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 13 C 0.07 1.95 5.45 -17.82 -0.10 1.86 16 14 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 15 Si 0.89 22.03 24.37 -169.99 -4.14 17.89 16 16 H -0.28 -6.74 6.87 56.52 0.39 -6.36 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 19 C -0.09 -1.81 5.14 -26.75 -0.14 -1.95 16 20 C -0.15 -2.33 4.64 -26.75 -0.12 -2.45 16 21 C 0.05 0.64 3.72 -4.67 -0.02 0.63 16 22 C -0.14 -1.53 5.71 -25.50 -0.15 -1.67 16 23 C 0.12 1.26 2.88 -27.32 -0.08 1.18 16 24 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 25 O -0.57 -5.76 11.40 -35.23 -0.40 -6.16 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.66 7.28 -51.93 -0.38 0.28 16 29 H 0.07 0.72 7.59 -51.93 -0.39 0.32 16 30 H 0.07 0.59 8.02 -51.92 -0.42 0.17 16 31 H 0.07 0.76 7.59 -51.93 -0.39 0.36 16 32 H 0.04 0.41 6.93 -51.93 -0.36 0.05 16 33 H 0.08 1.23 7.80 -51.93 -0.41 0.82 16 34 H 0.05 0.93 6.44 -51.93 -0.33 0.60 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 38 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.70 7.28 -51.93 -0.38 0.32 16 43 H 0.06 0.92 6.48 -51.93 -0.34 0.58 16 44 H 0.08 1.03 4.89 -51.93 -0.25 0.78 16 45 H 0.04 0.47 6.50 -51.93 -0.34 0.14 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.37 2.48 9.04 45.56 0.41 2.89 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -29.86 336.87 -9.07 -38.93 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.86 Total: 1.79 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -1.55 Total: -22.87 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.20 Total: -34.65 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.40 Total: -6.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.86 -9.07 -38.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.093 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds