Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.50701 * 2 1 4 4 C 1.53119 * 109.50315 * 120.07730 * 2 1 3 5 5 C 1.53122 * 109.15852 * 62.36087 * 4 2 1 6 6 C 1.53041 * 109.30737 * 57.60083 * 5 4 2 7 7 N 1.46850 * 109.52051 * 300.83745 * 6 5 4 8 8 C 1.46905 * 110.99983 * 185.84277 * 7 6 5 9 9 C 1.52995 * 109.46996 * 63.85014 * 8 7 6 10 10 C 1.53004 * 109.47133 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46700 * 60.00147 * 10 9 8 12 12 C 1.50702 * 109.46644 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99650 * 120.00439 * 12 11 10 14 14 C 1.37869 * 120.00345 * 299.99718 * 12 11 10 15 15 N 1.31522 * 119.99875 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00332 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47021 * 59.99780 * 16 14 12 18 18 H 1.48496 * 109.47387 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46942 * 300.00328 * 16 14 12 20 20 C 1.53002 * 109.47065 * 300.00049 * 11 10 9 21 21 C 1.52996 * 109.46932 * 303.85141 * 8 7 6 22 22 C 1.46846 * 111.19590 * 61.74398 * 7 6 5 23 23 H 1.09004 * 109.46206 * 58.27775 * 22 7 6 24 24 C 1.53001 * 109.45999 * 178.23730 * 22 7 6 25 25 O 1.42904 * 109.47107 * 174.53302 * 24 22 7 26 26 H 1.08997 * 109.47812 * 173.38829 * 1 2 3 27 27 H 1.09000 * 109.47169 * 293.39208 * 1 2 3 28 28 H 1.09006 * 109.47071 * 53.38494 * 1 2 3 29 29 H 1.09006 * 109.52726 * 182.22865 * 4 2 1 30 30 H 1.09003 * 109.52202 * 302.42037 * 4 2 1 31 31 H 1.08998 * 109.47455 * 297.65981 * 5 4 2 32 32 H 1.09001 * 109.53632 * 177.57092 * 5 4 2 33 33 H 1.09003 * 109.46283 * 180.82944 * 6 5 4 34 34 H 1.08998 * 109.46005 * 60.84866 * 6 5 4 35 35 H 1.09000 * 109.47073 * 183.84997 * 8 7 6 36 36 H 1.08996 * 109.47494 * 300.00319 * 9 8 7 37 37 H 1.09002 * 109.47128 * 60.00613 * 9 8 7 38 38 H 1.08996 * 109.47308 * 300.00576 * 10 9 8 39 39 H 1.08997 * 109.47366 * 180.02562 * 10 9 8 40 40 H 1.08996 * 109.46889 * 60.00173 * 11 10 9 41 41 H 0.96995 * 119.99603 * 179.97438 * 15 14 12 42 42 H 1.09000 * 109.47070 * 300.00242 * 20 11 10 43 43 H 1.09003 * 109.46573 * 180.02562 * 20 11 10 44 44 H 1.08997 * 109.47406 * 300.00189 * 21 8 7 45 45 H 1.09000 * 109.47359 * 60.00031 * 21 8 7 46 46 H 1.09000 * 109.47684 * 294.53511 * 24 22 7 47 47 H 1.09002 * 109.47150 * 54.53742 * 24 22 7 48 48 H 0.96703 * 114.00288 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0411 -0.7234 1.2490 5 6 1.5764 -2.1818 1.2106 6 6 2.0860 -2.8417 -0.0728 7 7 1.5682 -2.1133 -1.2381 8 6 1.9229 -2.7992 -2.4878 9 6 1.2461 -4.1707 -2.5267 10 6 1.6150 -4.8848 -3.8286 11 6 3.1329 -5.0629 -3.9000 12 6 3.4963 -5.7657 -5.1827 13 1 4.1452 -5.2824 -5.8980 14 6 3.0005 -7.0256 -5.4429 15 7 2.2100 -7.6140 -4.5718 16 14 3.4515 -7.8970 -7.0324 17 1 4.9248 -8.0699 -7.1012 18 1 2.7940 -9.2279 -7.0711 19 1 2.9939 -7.0855 -8.1888 20 6 3.8098 -3.6913 -3.8611 21 6 3.4408 -2.9773 -2.5587 22 6 2.0409 -0.7231 -1.2482 23 1 3.1308 -0.7100 -1.2550 24 6 1.5152 -0.0151 -2.4986 25 8 1.8673 1.3689 -2.4458 26 1 -0.3634 -1.0208 -0.1183 27 1 -0.3633 0.4080 0.9432 28 1 -0.3633 0.6130 -0.8249 29 1 3.1304 -0.6891 1.2696 30 1 1.6435 -0.2371 2.1399 31 1 0.4871 -2.2168 1.2299 32 1 1.9731 -2.7137 2.0754 33 1 1.7442 -3.8760 -0.1098 34 1 3.1757 -2.8186 -0.0849 35 1 1.5869 -2.2040 -3.3369 36 1 1.5820 -4.7659 -1.6776 37 1 0.1646 -4.0438 -2.4763 38 1 1.2787 -4.2895 -4.6774 39 1 1.1324 -5.8617 -3.8565 40 1 3.4692 -5.6583 -3.0512 41 1 1.8609 -8.5002 -4.7551 42 1 3.4734 -3.0960 -4.7100 43 1 4.8912 -3.8183 -3.9125 44 1 3.9231 -2.0002 -2.5309 45 1 3.7768 -3.5725 -1.7096 46 1 1.9568 -0.4688 -3.3858 47 1 0.4304 -0.1125 -2.5423 48 1 1.5650 1.8810 -3.2084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -72.869142 kcal Electronic energy + Delta-G solvation = -24229.129336 eV Core-core repulsion = 21089.561289 eV Total energy + Delta-G solvation = -3139.568047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21222 -37.34449 -36.35376 -33.96787 -31.97451 -31.90322 -29.84073 -28.52035 -27.21163 -25.74550 -24.66775 -23.16274 -21.82661 -21.29556 -20.11540 -18.69734 -18.00605 -17.39258 -16.33002 -15.98598 -15.51528 -14.68244 -14.51236 -14.46032 -13.82298 -13.78183 -13.44287 -13.19187 -13.07012 -12.83778 -12.58637 -12.14902 -12.10993 -11.80471 -11.51681 -11.28660 -11.24211 -11.01461 -10.96900 -10.75063 -10.62030 -10.56407 -10.48366 -10.19960 -10.07087 -9.96838 -9.67924 -9.64230 -9.31887 -8.88113 -8.70236 -8.26739 -7.86246 -5.95371 -4.01495 3.32709 3.37567 3.40149 3.83664 4.45327 4.51621 4.82503 4.86596 4.97123 5.14695 5.32391 5.34454 5.37749 5.45464 5.49144 5.58167 5.61167 5.68574 5.75413 5.85511 5.87971 5.94620 5.96462 6.00914 6.12344 6.17299 6.21687 6.27940 6.34191 6.39069 6.43503 6.53040 6.57273 6.62551 6.74992 6.80858 6.92016 7.12823 7.28617 7.40824 7.44181 7.57329 7.60181 7.78280 8.05166 8.19813 8.50559 9.02380 9.62984 11.10079 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028901 B = 0.004295 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.577013 B = 6518.155664 C = 6951.090188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.118 4.118 6 C 0.053 3.947 7 N -0.523 5.523 8 C 0.083 3.917 9 C -0.105 4.105 10 C -0.108 4.108 11 C 0.050 3.950 12 C -0.514 4.514 13 H 0.052 0.948 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.103 4.103 21 C -0.146 4.146 22 C 0.092 3.908 23 H 0.044 0.956 24 C 0.078 3.922 25 O -0.574 6.574 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.032 0.968 39 H 0.093 0.907 40 H 0.023 0.977 41 H 0.259 0.741 42 H 0.045 0.955 43 H 0.044 0.956 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 14.260 9.033 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.095 4.095 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.156 4.156 6 C -0.075 4.075 7 N -0.248 5.248 8 C -0.024 4.024 9 C -0.143 4.143 10 C -0.146 4.146 11 C 0.032 3.968 12 C -0.552 4.552 13 H 0.070 0.930 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.142 4.142 21 C -0.185 4.185 22 C -0.017 4.017 23 H 0.062 0.938 24 C 0.000 4.000 25 O -0.378 6.378 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.601 13.920 9.672 17.329 hybrid contribution 0.953 -0.405 -1.545 1.860 sum -2.648 13.515 8.127 15.991 Atomic orbital electron populations 1.21774 0.94847 1.02737 1.00212 1.21050 0.96557 0.98672 0.93249 0.90755 1.21648 1.00168 0.96020 0.97626 1.21635 1.01793 0.95317 0.96823 1.22126 0.97432 0.98353 0.89591 1.62173 1.59234 1.00487 1.02929 1.21894 0.93869 0.96136 0.90545 1.21667 0.98561 0.93572 1.00503 1.21607 0.99925 1.00663 0.92452 1.18638 0.91406 0.89997 0.96799 1.21200 1.29083 1.00759 1.04135 0.92984 1.24951 0.95132 0.97318 0.96507 1.69867 1.33188 1.14855 1.35031 0.86724 0.78610 0.78815 0.84219 1.20401 1.21339 1.20374 1.21569 0.99479 0.98776 0.94336 1.22200 0.96804 0.99226 1.00275 1.21392 0.97314 0.88836 0.94112 0.93777 1.22271 0.99232 0.81079 0.97399 1.86398 1.82031 1.20886 1.48507 0.91002 0.93878 0.93310 0.92599 0.92166 0.91022 0.92036 0.89911 0.94667 0.90477 0.92868 0.93227 0.94950 0.88918 0.95905 0.93060 0.93621 0.93740 0.93937 0.92356 0.93334 0.92561 0.77623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.08 37.15 0.30 -1.27 16 2 C -0.08 -0.92 2.52 -90.55 -0.23 -1.15 16 3 H 0.07 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.12 -1.30 5.51 -26.61 -0.15 -1.45 16 5 C -0.12 -1.36 5.74 -26.65 -0.15 -1.51 16 6 C 0.05 0.73 4.59 -3.83 -0.02 0.71 16 7 N -0.52 -7.52 3.63 -218.76 -0.79 -8.31 16 8 C 0.08 1.38 1.88 -67.71 -0.13 1.25 16 9 C -0.11 -1.98 5.09 -26.73 -0.14 -2.12 16 10 C -0.11 -2.48 4.98 -26.73 -0.13 -2.61 16 11 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 12 C -0.51 -14.05 8.56 -34.44 -0.29 -14.34 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 15 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 16 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.10 -2.15 5.14 -26.71 -0.14 -2.28 16 21 C -0.15 -2.57 4.49 -26.71 -0.12 -2.69 16 22 C 0.09 1.24 1.55 -67.72 -0.10 1.14 16 23 H 0.04 0.67 6.81 -51.93 -0.35 0.31 16 24 C 0.08 0.98 5.40 37.16 0.20 1.18 16 25 O -0.57 -6.61 12.78 -35.23 -0.45 -7.06 16 26 H 0.07 0.89 6.18 -51.93 -0.32 0.57 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.55 6.93 -51.93 -0.36 0.19 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.83 6.74 -51.93 -0.35 0.48 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.22 6.14 -51.93 -0.32 0.90 16 34 H 0.04 0.51 6.59 -51.93 -0.34 0.17 16 35 H 0.08 1.30 5.88 -51.93 -0.31 0.99 16 36 H 0.05 1.03 6.37 -51.93 -0.33 0.70 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 40 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.70 6.75 -51.93 -0.35 0.35 16 45 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 46 H 0.05 0.65 6.49 -51.93 -0.34 0.31 16 47 H 0.06 0.69 6.89 -51.93 -0.36 0.34 16 48 H 0.38 2.69 9.12 45.56 0.42 3.11 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -28.26 339.83 -9.60 -37.87 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.70 Total: 3.29 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -1.39 Total: -22.51 kcal Atomic # 7 Polarization: -32.77 SS G_CDS: -0.17 Total: -32.94 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.45 Total: -7.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.26 -9.60 -37.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.004 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds